mRNA_P-littoralis_Contig12.179.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig12.179.1
Unique NamemRNA_P-littoralis_Contig12.179.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig12contigP-littoralis_Contig12:754111..757080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1288
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_001660.1
Cds size435
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig12.179.1prot_P-littoralis_Contig12.179.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig12 755212..756452 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789511.4935336-UTR-P-littoralis_Contig12:754110..7542651680789511.4935336-UTR-P-littoralis_Contig12:754110..754265Pylaiella littoralis U1_48UTRP-littoralis_Contig12 754111..754265 +
1680789511.5073519-UTR-P-littoralis_Contig12:755141..7552111680789511.5073519-UTR-P-littoralis_Contig12:755141..755211Pylaiella littoralis U1_48UTRP-littoralis_Contig12 755142..755211 +
1680789511.5487885-UTR-P-littoralis_Contig12:756452..7570801680789511.5487885-UTR-P-littoralis_Contig12:756452..757080Pylaiella littoralis U1_48UTRP-littoralis_Contig12 756453..757080 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789511.5197468-CDS-P-littoralis_Contig12:755211..7553101680789511.5197468-CDS-P-littoralis_Contig12:755211..755310Pylaiella littoralis U1_48CDSP-littoralis_Contig12 755212..755310 +
1680789511.528748-CDS-P-littoralis_Contig12:755745..7558651680789511.528748-CDS-P-littoralis_Contig12:755745..755865Pylaiella littoralis U1_48CDSP-littoralis_Contig12 755746..755865 +
1680789511.5388954-CDS-P-littoralis_Contig12:756236..7564521680789511.5388954-CDS-P-littoralis_Contig12:756236..756452Pylaiella littoralis U1_48CDSP-littoralis_Contig12 756237..756452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig12.179.1

>prot_P-littoralis_Contig12.179.1 ID=prot_P-littoralis_Contig12.179.1|Name=mRNA_P-littoralis_Contig12.179.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=145bp
MEVTRHRADGSVSVTRPPTTERPRGVGKRCIVQAGISGNSLTRMASGTYD
MDVLRDILTTEEEALEELVQMYQAESKVNPPPSFDLLQLVRLEEGERRPF
LESSLQACVSDAVPAFIDKYLERTKGLEARVTDAIRTIRPITDK*
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mRNA from alignment at P-littoralis_Contig12:754111..757080+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig12.179.1 ID=mRNA_P-littoralis_Contig12.179.1|Name=mRNA_P-littoralis_Contig12.179.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2970bp|location=Sequence derived from alignment at P-littoralis_Contig12:754111..757080+ (Pylaiella littoralis U1_48)
CCGCCGACGATTTGCGGCTTGCGGCTTGCGGCAGCTGTGCGGCTCTGCAA
TTTCTCACATCTCCTCCACCCCTTCATTGCCTACTCACACCACAAATCTG
TCTGTTCTTCGCGCAAACTTGTACCTGGTAGTTCATTCTTGACGGTGCTT
CCACGGTGAGTGTATTCTGATGTACATCATAGATCTTTCATACTTCGAAG
TAGATCATATCATATGGGGAAAAGTTTCGTCGCTGATCGCATGACGCTTT
ACGCGTTGCGCGCACAGCGCAGCAATCCTATTTGTATGATACCACTGCTG
TACTGCTGTACCGTACACCCTCATACTTTCGAAGTATTTACTAACGTCGC
TTATTTACCTGCTGATTACTCCTCAGAGAGGTTTATCTCGCCTTGCAGTA
CTTTTCTACCACCTGATCTCTCGTGTGTGTGCACCGTCCACTCCGGCCGG
ATGTAGCACCTAGCACCCTCGCACTTTCACCGAGAAATGCCGTGAAGCAC
CCTGTGTGTGCGGGTAGATCGTAGATCGACACACAAAGACTAGTACGCAC
GTTTCGGTCTCCTTCGGTACCCTTTATCATAGATGTCATCGAGATTTCGT
ACGTCATACATACCACACGGCTGTAGTGCTGTGAGATCCCTTTGAAAATA
TACACTTCGTAATAAATAGACGCTTGGATCTCGTGTACTTTGAAACATCC
CGGTTCGGATGCGTGCTTGACTTGTGAAAATCTAGCGTGTGTGTCTGTTT
AGTATCCATTCATGCATGGCTGGTACCAAAAGCCGTTGCACCAACCCACG
GCAGGAGGACGGGGTGGGGGGAGCTGGCTTATGTGGTAGGGGCAGGAGGG
ATACTCTCTGGAGATTGGTGACTAACTTTCGGTTTGAGCAAACTCCATTA
GTCTACTTTTACCGGGGGTGTCGTGCCGGCTTCCTCCGTGCCACCCACAC
TGTCATAGAACCGCCCGATCTCCGCACTACTGCTGTACGCTGATCTGAGC
AACACAGCCCTGTTTGTGTTCTTCTTGGCAGGTTCTATTCTGTAAGGCCT
GCACACGTTCGGAATTTTCACTTTTCAGCCTCGAGCTGCACACAACAGAA
AATGGAGGTAACGCGACACAGAGCGGACGGGTCGGTGTCGGTGACAAGGC
CTCCCACCACTGAACGACCACGCGGCGTAGGCAAACGCTGTATCGTGCAG
GTGTGGAACTGCAAGGTCTGGAATTCACGTGATGGAATGAAAGCCACCAA
GGCACCAGCTTCACGGGTACCATAGCGCACTAGTCCCCACAACTCTATTT
ATACAGCATAATCATACTCGTACTTCATGCGTATACAAACATTATCACTA
GTGTAGAGCAGTTTCCTCATGGATGGCTACGACGATTGAGTGTAACTGGA
GCTGACGTGCGTACTGCACGCAGCTGAGGTGAGTTGATTTTGCTTACACT
ATTTCCAAGAGCACCCGCCATGCTTACACGTGCCACTACAAAACGAAAAA
AAGGTGGAACTTCCACCTGGACATTTGTTTTGTACCTTTTCGGTTTTGTT
TTTTTGCTGTTACCTGTTGACTGGCCCCTGATAAACTCTGAGTCCGGAAT
CCCCCCCCCCCCCCACTGCTCTTGTAACTTGAAAGGCGGGCATATCAGGT
AACAGCCTTACCAGAATGGCTTCCGGCACATACGATATGGATGTTCTGAG
AGATATCTTGACCACCGAGGAGGAGGCCCTGGAGGAACTCGTCCAGATGT
ACCAGGTTAACATTTGGCTCTCTTTGGTCTGTCATTGGCTCCACTTGAGT
GCTGCTTAGTTGCTCCATCACTGAGTATGTGCGCTTGCCGCGCTGTGGGA
GGGGGCGAGGCAGAGTGGGAACGACATTTCATAGAAAAGGACCACGCCGA
AGCGAGATGAAAACACGTGGCACGTGCGCCTGTATGGGGGGGGGGGGGGT
GCGCACGGAAGAACCTTTCAAAGACGGAAAATGTTTTTGTGCGATCTTTA
ACAGTAAATCATCCGCGGCACATTCTGCAGAACCTGTTTTGAAGCAGGCC
TGCAGCGAACTGAACGATCACCATTTGTGGGCATTGCCGTGGCACCTGTG
TGTGTATGTGTGTGTGTTACCAACAGGCGGAGAGCAAGGTAAATCCCCCA
CCATCATTCGACCTGCTTCAGCTTGTGCGCTTGGAGGAAGGCGAACGCCG
ACCTTTCCTTGAGAGTAGTCTGCAAGCCTGCGTGAGCGATGCGGTGCCGG
CATTTATCGACAAGTACCTGGAGCGCACCAAAGGGCTCGAAGCGCGTGTA
ACGGACGCCATCCGCACAATACGACCGATCACCGACAAGTAGCGATGGAA
GGACGTCAAAGTGCTGCGGCATAATTCCACCCGTGTTTGTTGTGTACGTG
TTGTATCAATTTGTGTTTCGTGAAAAAATCGTTATTTGCAAGACAAGTTC
GACGCGAGATGCGTGCAGGTTGCCTCTTCACCGGTGGTTTATTTTTACCT
TGAGGGTTTCGTACAGAGTTTGTGGTCCTTCAGATAGACGAATTGGCGCC
ACGCACCTACAGCTGCGCGCGCTGCATTAGGCAGAATGATGGCGAAACAA
AAGACAGAATAACGCATATGTGTGTAAATATAAAACGACAGGTGACTCTA
CGAAATACAGGGGGGTTCGCAGTATTTAATGTTGCGGAGATACGACGCCA
CCTACGGGCTACACGCAGGGCAGAGCTCCTGCATGCATGTGTATTGCTGT
TGGTGTTGCTAAGTTTGTGTTTGATTGGGGCATATACGATGTAACGTGTT
GTGTACGGCATTGTGCAACAACAGTAAAGAGGTCACCTTGTGTCATCGCA
CGTAATCGTGTTGTGAGTAAAGTTGTGATGCCTTCTCCGATGTAATTGTA
CGGCAATAGATTGCCGAAGGCATCGAATGAAAGCTCCCGAGACCAGTGGT
TATTTGCTGAGGTGGCCGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig12:754111..757080+

>mRNA_P-littoralis_Contig12.179.1 ID=mRNA_P-littoralis_Contig12.179.1|Name=mRNA_P-littoralis_Contig12.179.1|organism=Pylaiella littoralis U1_48|type=CDS|length=435bp|location=Sequence derived from alignment at P-littoralis_Contig12:754111..757080+ (Pylaiella littoralis U1_48)
ATGGAGGTAACGCGACACAGAGCGGACGGGTCGGTGTCGGTGACAAGGCC
TCCCACCACTGAACGACCACGCGGCGTAGGCAAACGCTGTATCGTGCAGG
CGGGCATATCAGGTAACAGCCTTACCAGAATGGCTTCCGGCACATACGAT
ATGGATGTTCTGAGAGATATCTTGACCACCGAGGAGGAGGCCCTGGAGGA
ACTCGTCCAGATGTACCAGGCGGAGAGCAAGGTAAATCCCCCACCATCAT
TCGACCTGCTTCAGCTTGTGCGCTTGGAGGAAGGCGAACGCCGACCTTTC
CTTGAGAGTAGTCTGCAAGCCTGCGTGAGCGATGCGGTGCCGGCATTTAT
CGACAAGTACCTGGAGCGCACCAAAGGGCTCGAAGCGCGTGTAACGGACG
CCATCCGCACAATACGACCGATCACCGACAAGTAG
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