mRNA_P-littoralis_Contig832.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig832.10.1
Unique NamemRNA_P-littoralis_Contig832.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig832.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig832contigP-littoralis_Contig832:23434..23707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size233
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791696.565336-CDS-P-littoralis_Contig832:23433..236321680791696.565336-CDS-P-littoralis_Contig832:23433..23632Pylaiella littoralis U1_48CDSP-littoralis_Contig832 23434..23632 -
1680791696.575587-CDS-P-littoralis_Contig832:23673..236811680791696.575587-CDS-P-littoralis_Contig832:23673..23681Pylaiella littoralis U1_48CDSP-littoralis_Contig832 23674..23681 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791696.5852547-UTR-P-littoralis_Contig832:23681..237071680791696.5852547-UTR-P-littoralis_Contig832:23681..23707Pylaiella littoralis U1_48UTRP-littoralis_Contig832 23682..23707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig832.10.1prot_P-littoralis_Contig832.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig832 23434..23681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig832.10.1

>prot_P-littoralis_Contig832.10.1 ID=prot_P-littoralis_Contig832.10.1|Name=mRNA_P-littoralis_Contig832.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
MFAATKAEPACTIAITNTAQRARQDLSHKIWFHRLGTTHARATKAEPACT
IAITNTAQRAHQPRLTTS*
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mRNA from alignment at P-littoralis_Contig832:23434..23707-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig832.10.1 ID=mRNA_P-littoralis_Contig832.10.1|Name=mRNA_P-littoralis_Contig832.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=274bp|location=Sequence derived from alignment at P-littoralis_Contig832:23434..23707- (Pylaiella littoralis U1_48)
ATGGTTTCACCGTCTAGAGACAACACATGTTCGCGCAACTAAAGCCAGAC
CTACTTGTACCATTGCGAGAGACAGCGCAACTAAAGCCGAACCTGCTTGT
ACCATTGCGATCACGAACACTGCCCAACGGGCTCGCCAGGATTTATCTCA
CAAAATATGGTTTCACCGTCTAGGGACAACACATGCCCGCGCAACTAAAG
CCGAACCTGCTTGTACCATTGCGATCACGAACACTGCCCAACGGGCTCAC
CAACCAAGATTGACAACATCTTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig832:23434..23707-

>mRNA_P-littoralis_Contig832.10.1 ID=mRNA_P-littoralis_Contig832.10.1|Name=mRNA_P-littoralis_Contig832.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig832:23434..23707- (Pylaiella littoralis U1_48)
ATGTTCGCCGCAACTAAAGCCGAACCTGCTTGTACCATTGCGATCACGAA
CACTGCCCAACGGGCTCGCCAGGATTTATCTCACAAAATATGGTTTCACC
GTCTAGGGACAACACATGCCCGCGCAACTAAAGCCGAACCTGCTTGTACC
ATTGCGATCACGAACACTGCCCAACGGGCTCACCAACCAAGATTGACAAC
ATCTTAA
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