mRNA_P-littoralis_Contig831.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig831.24.1
Unique NamemRNA_P-littoralis_Contig831.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig831.24.1 vs. uniprot
Match: A0A6H5KG81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG81_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 4.760e-83
Identity = 132/172 (76.74%), Postives = 138/172 (80.23%), Query Frame = 3 
Query:    3 FSKAIRARPGDASLYWGRSHAWERAGKSRHAVADAGVGVCLRPRVAAGFVRLSAAYEAQGRHAHVVRACFLGMRCGDSSKNGELGRRMSAAREAGQLPPLEWTPADRRERWTWMFLSFRAFLLRTAAGTAGRFRLAGGGRLARRLVEACSAAGEQGFVRHPWPRGAMPPALL 518
            FSKAIR RP DASLYWGRS +WERAG  R AV DAGVGVCLRPRVAAGF RLSA +EAQGRHA VVRACFLGMRCGDSSKNGELGRRMS+AREAGQLPPL+WTP DRRERWTW FLSFR FLLR AAG AGR R+ G G      + AC   G QG    PWPRGAMPP LL
Sbjct:   40 FSKAIRLRPADASLYWGRSQSWERAGNPRKAVVDAGVGVCLRPRVAAGFARLSATFEAQGRHADVVRACFLGMRCGDSSKNGELGRRMSSAREAGQLPPLDWTPPDRRERWTWAFLSFRGFLLRLAAGIAGRLRVGGAGL----ALGACE--GGQGLSSPPWPRGAMPPVLL 205
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BLAST of mRNA_P-littoralis_Contig831.24.1 vs. uniprot
Match: D7G7K5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K5_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 5.140e-69
Identity = 114/148 (77.03%), Postives = 120/148 (81.08%), Query Frame = 3 
Query:   75 AGKSRHAVADAGVGVCLRPRVAAGFVRLSAAYEAQGRHAHVVRACFLGMRCGDSSKNGELGRRMSAAREAGQLPPLEWTPADRRERWTWMFLSFRAFLLRTAAGTAGRFRLAGGGRLARRLVEACSAAGEQGFVRHPWPRGAMPPALL 518
            AG  R AV DAGVGVCLRPRVAAGF RLSA++EAQGRHA VVRACFLGMRCGDSSKNGELGRRMS+AREAGQLPPL+WTP DRRERWTW FLSFR FLLR AAG AGR R+ G G      + AC  AG QGF   PWPRGAMPP LL
Sbjct:    2 AGNPRKAVVDAGVGVCLRPRVAAGFARLSASFEAQGRHADVVRACFLGMRCGDSSKNGELGRRMSSAREAGQLPPLDWTPPDRRERWTWAFLSFRGFLLRLAAGIAGRLRVGGAGL----ALAAC--AGGQGFSSPPWPRGAMPPVLL 143
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig831.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KG81_9PHAE4.760e-8376.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7K5_ECTSI5.140e-6977.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig831contigP-littoralis_Contig831:107750..113614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1144
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_002070.1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791696.4842775-UTR-P-littoralis_Contig831:107749..1083601680791696.4842775-UTR-P-littoralis_Contig831:107749..108360Pylaiella littoralis U1_48UTRP-littoralis_Contig831 107750..108360 -
1680791696.52374-UTR-P-littoralis_Contig831:111445..1114481680791696.52374-UTR-P-littoralis_Contig831:111445..111448Pylaiella littoralis U1_48UTRP-littoralis_Contig831 111446..111448 -
1680791696.535784-UTR-P-littoralis_Contig831:113399..1136141680791696.535784-UTR-P-littoralis_Contig831:113399..113614Pylaiella littoralis U1_48UTRP-littoralis_Contig831 113400..113614 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791696.4949498-CDS-P-littoralis_Contig831:108360..1085621680791696.4949498-CDS-P-littoralis_Contig831:108360..108562Pylaiella littoralis U1_48CDSP-littoralis_Contig831 108361..108562 -
1680791696.50933-CDS-P-littoralis_Contig831:111332..1114451680791696.50933-CDS-P-littoralis_Contig831:111332..111445Pylaiella littoralis U1_48CDSP-littoralis_Contig831 111333..111445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig831.24.1prot_P-littoralis_Contig831.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig831 108361..111445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig831.24.1

>prot_P-littoralis_Contig831.24.1 ID=prot_P-littoralis_Contig831.24.1|Name=mRNA_P-littoralis_Contig831.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MRCGDSSKNGELGRRMSAAREAGQLPPLEWTPADRRERWTWMFLSFRAFL
LRTAAGTAGRFRLAGGGRLARRLVEACSAAGEQGFVRHPWPRGAMPPALL
PPCA*
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mRNA from alignment at P-littoralis_Contig831:107750..113614-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig831.24.1 ID=mRNA_P-littoralis_Contig831.24.1|Name=mRNA_P-littoralis_Contig831.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5865bp|location=Sequence derived from alignment at P-littoralis_Contig831:107750..113614- (Pylaiella littoralis U1_48)
GGTTTAGCAAAGCCATCCGAGCACGACCAGGAGATGCCTCGTTGTACTGG
GGGCGGTCTCACGCGTGGGAGAGGGCGGGAAAATCTCGACATGCGGTAGC
GGATGCGGGGGTCGGGGTCTGTCTGCGGCCGAGGGTGGCGGCGGGTTTCG
TCCGGCTTTCGGCGGCATACGAGGCGCAGGGTCGGCACGCGCACGTCGTG
AGAGCGTGCTTCTTGGTGAGAGAGCGAATACTCAGCAAACTGGTACTGCT
GTATTTGGCAAGGCTGTACAAGAACTCGGAAGTATTGCTTGCTCTGAAAG
AAGGAAAAAAAATCCAGTTGAGCTATTCCCTCCTGTCTGTCGTGACCCTG
GCTGATGCCCCCAAACATACCTCAAGGTGTAGACTGGCGTCCAGAATAGA
TGGAATGTCAACACACACACACCAGACACAAACAGACTGTAAAGGAAAGT
TAAGAGATACCGTTTGGCCTTCCCTAGTCCTGTGTGAAGAACCAATCCCG
GCGGGTTTGCTCGCGTATTATCATAAACCGCAAAGCTTAGACTAGCTGTC
AATAGTGGAGTGGATGACAACAGACACACGCCGTGTAAGCGGAGCTTGCT
TTTTGGTGTGCCAGTTCGTGATCCAAACCTTAACCTTTGTGCCAGGTATG
GTGTGTGTGCCCTTCGGAAAACATACGTTGCTGGAAGACGGGAAGCATCT
CTGTGTACACACCACACAACGCCGGAGGTAGTAGAGACAGGTTCAGCTTG
GTGCACACCACGTGGTATCAGATGAGAATTGCGTACCTCTCTTTTCTGGC
CTTTTTCGAGTGTACCACCCTTCCTCTTTTTGTTTTCCTGTGTGTTTGTT
ATTTCGGGTCTTGTTTTTGTGTACTTCGAGTGTATCACATGGTTCTGCAC
CTTTTTGTGAGCACGGGCCATGTACTTGTACCCAGATCTTTGCGAGGAGC
CAATGTGAGAATCAACAACGAACAACGTCAGGCGGGACGACCAAACACAG
CTTAAAGCTTACTTGTCGGTGAGCTGGTTCAGGGCCAATCGTACTGCCGC
AGGTTGCGTCGGATGAATCTGAGATTCCGCACCCACCCCTTGCACCGATT
TTTAACGCTCGATTTACGGTGCTCCACAGCAGTAGTTCGTTTTTACCACA
CAACCATATCACGCAAGTAAAACCCTACTTCCTTCTCGAGGGCTGATGAC
GCTCTTCATGTCAAGCCAGCTCGAATGCACCTGAAAATATGATACCACCC
ACGAACAACGAGTTTTGTACCTGCACACCGTCTGTTGGGTGGGTTGGTGG
GTGGGTTGGAGTCTGATGATGTTGAGATTTTTTGGAGCTCCTGCCTGCCT
GCCTTTTCTGTGTCGAGCACCTCTTATTTGTGCAGGACAATGGACCAGTC
TCCGTAAGTAGCGGTTCTACACGAAGTTACTCACACATGGGTCTAGAGAA
GGGTTCCCAGGAACCTGGAACGATCCATAAGAAGTTCCAGAACCATAAAG
AACGATCTCCATGGTTCTTATCTGGTTCAGTAGGCTCTAGAGTATATAGA
GCCAGTAGTACCGTTCAGAGATAACCACAGTAGCAGTACAAGAGAAGCGT
CTTTACCGGTCTCACTCCCAGCCACCACCTGTCTCAAGCAGACGGGAGTT
AATTCATACCTACAAACATCTCTCACGGACTGCTTTATTATCCATACAAC
GCACGTTTAACAACGAAGGAAACTTCATAGTTCACGTGCATATCTCTGCA
TAACAGTCACTCCATATGAAACGCGCTAACAAGTTAGGCTTGTTTTCACT
GGGGCCAATAACAACAGCGTGCTCGCTAAAGTTAACTCGCCACGCCTACT
TTCTAGACCACCAGAAGTTTGACACATCGTCAAAGTCTAGACTTTCTTAT
ATTTCATATAAACCATTTGATTAGTCGCTTCTGATATCTCGCAACGAGCA
AGTCCTCGCAGCAGGAACATCGCACAAGCCAACAACACACCACCGACAAC
CACACGGTCGGTAAGCCACCCTCCAGAAACGGCGTATACCTTTTGTTCTC
AAATTTATTATTATTCTCTTCATCACCGTATTCCTATTCTCATTTCTTCG
CTACACTTGTTACTATTAATATTCTTAAACATCCGTGCATCCATCCGCCG
CCGCGTGACCAACCAGGGCATGAGATGCGGCGACAGCAGCAAGAACGGGG
AGCTCGGGCGAAGAATGTCCGCGGCCAGGGAGGCCGGCCAGCTCCCGCCC
CTCGAGTGGACACCGGCGGACAGACGCGAGAGGTAGGTGGAAGCCCGTGT
GATGATGAGCATGTTCAGCACGCCTCCATGATGTCGGCTTCCTTCCTTTC
TAACCCCTTCGTGCTGGCAGGCAGCAGCCGCGCACCTACCCGAGGAGCCA
CGAACCAAAGAACACACGGCCCCTCAGTGACGTTATCATAACAAGTTAAT
TAAATGCTTCGTGCCCGGTTTGCTCGATGCTCGGGGATAGGGTAGAGCGG
CCGTGATAAGACCGTCTTGATGTCTTATTCTACAATCGAGCGAGACAGAC
GGCACATGCCACAGCCCCTCTCGGGTCACGCGTTACGTAATCTGCACGCC
ATATTATGACGCCTCCTGCTCATGAAGCCATCCGAATCTCCGGAGACTAC
TTCTATGTGACTTGCCGCACGAGTAATTCGGTCATATTTTACTGTTTGAG
TCGCCACGCGGCCCAAAGCGTCAAACGACAAAATCGAGACAAAATTTGCC
CCAAGGTTGTGACCGCGCCGACTGGCAAGCGGGCGACGTACGCACATACA
TTCATGCATGCATGTTCACGAACGTACCTGGTACGTACGTTTCATAGACA
TCATTCGTAATGTTTTTTTGTTGTAGATACTACGGGACGGTTGATCCCTT
CTCACGGTAATAAGCTGGAAGATAAAAATACAACACAACAAGCACCGCAG
AAGCCGGGTGGAGGAAAACAAAAAAAAAACTCCTGTGTGGTCTTCCTTCT
TCATTACCCCCAGCTGGTGCACCCACTTCAACCGAAAGGTGTAGACTGTC
GCCCAGAATAAATGCAGGGCCGTACGTGGTATTGTGATGGGATGGTATAC
CATCATTAAATCGTATGGTATGGTATGGTATGGTAATGGTTGCGGAATTC
TGGTCCCATCACCAGATACCATAAAGTGACGACCACGCCATTCGAAGGCA
CCATCGTTAAATGGTGCTGGTTTTTGAACGCTTTCCATCCCATCTAATTT
ACCATCACAGCTGCTGAAGTTACCACCATCCCATCGATGACAGTCTTCTC
CTACCCATCCCTCTTCCCCCAGATTTCCCACGAACACCGAACACAACCGC
GCCTCTCGCGCCCTCCTCCCACCCAATATTATCGTACTTCCTGAGGGAGG
GGTGTGTACGGGCGGAAAATGTGTGGGCATGGGGGGTAGGGGGTAGACCC
GCCTAAAACCACCGTACAAAACACAAAAACACCAGCAGAAAAGCACATGA
CTACCCCTACCGCCGGCGATGGTCACCCTGAACAACTAGGGTTGGTTGCG
GTGTCCTGTCACGTTTCGATTGCTAGCTTTTGTGTTTTGTTTTTGTTTGT
TTTTTGTTTTTCGCCTTTGTTTTTGCCGTTTTTGTTTTTCGCCTTTGTTT
TTGCCGTTTTTTGTTTTTCGCCTTTGTTTTTGCCGTTTTTTGTTTTTCGC
CTTTGTTTTTGCCGTTTTTTGTTTTTCGCCTTTGTTTTTGCCGTTTTTAT
TTCAGCGTATGTCTGGTACGTAGGTTGGGGTTAGTTGGTGCCTGCAGCTG
CTGAGATCTAAATAAAAACATACGACCATATTCTCAATAATATTAAACAT
TTGCTGCTGTTGTCAGTACAGCTAGCTGCTTTTTTTTTTTTTTTTAGACC
TAGCTGGACCGACGGAAGATGACATGTCTCGTGTATGCTTCGTATGTGTT
GTATGTGCAAGCGGGAGGGTACTGGAAACACCAGGGCAACAACTCTGTGT
ACCAGAGTTCATGTGTCCCCGTCTTCTGGCCACCACGCCACGGCATTTGC
TCCCCCATCCCGTCACACTTACCGTCCCACCCGTTACCATCCCATCCCAT
CACGCGAAGCCAACATTTACCATCCCATCCCATCCCATCACGTCATGTAC
GATTCCGTCCCATCCCATCGTATTACCATCAAAGTGGGCGCAAATACCAT
CCCATCTGACCTGATGGGAACCCCAAACATTTTTCCGCCTGCGGCGGGCT
GACCACCCCGATGGGGTGCAGGCGCCACGTACCACCCTGAAAAAATGGGA
CGAAAATAAAAAAAAGACACATACGCTATACCACTCGTTCGTAGTATTTA
TCATGCATTTATTACCAAACCCAGGCTCTGACGAGCATGATCGAGGATGG
AATTTGCGGTTTGTGGATGTACTTTTTCGAGGCTAGCTAACGCGATAGGT
TGTGCGAAATGGTTGACAGGAAAATTCTGGAAATGTTCCACGGCAGTTGG
GGTGAGGTGGGTGGGTATAGAGGCAAGGAGGGGGTAGGGTCGGCTTTGTA
CGCAAACCGATGAACTCAATGAAGCTTGCCTTCGAGCGTAAATACATGGT
TCTAATCGGCACATAGTTCGCGCTCATTTTTTGCTATTCTAGCTTGCTTT
TTTTTTACGCGTCTTTTTTTCCCAACGGCGTTTTTTATTAACGACCCGCC
GACCCGTCTCAGCCAAACCCCAACCCTATCCCTGACCTGAACGGAAGAGG
ACAGCTAGGTTGGTAACCCGCGCTGCGCGCGCGCTATGACGGAGGCAGTC
GTTCGCTGCGCGTGCCGTAGGGGTACGACTGCATAGGGACTGCGTGAGAG
CCCACAAAAATTTCCACTTTTTTTTACGACAAATTTCGTAGGCGCTTGCT
CGTACTGGAGGCTATTTATTCCCCATCTGTCAAAGCCCTGAACAACTGAT
GATGTCCTTTCCTCATGTACGAAATTCGAAATGCCAACTTTCATGTATCG
TTAATAACTGCTTGTTGTCCTGTCGATGAAACAACGGAAACCGAGATCGC
AGATGGACCTGGATGTTTCTGTCCTTCCGCGCCTTTCTCCTGCGAACGGC
GGCGGGGACAGCCGGACGGTTTCGCCTCGCGGGGGGGGGGAGGCTCGCGC
GAAGACTAGTAGAAGCTTGCTCCGCAGCGGGAGAGCAAGGGTTTGTGCGC
CACCCCTGGCCACGAGGGGCAATGCCTCCGGCGCTTCTCCCTCCTTGCGC
CTGAAGGGTTTCCTACTGACAAGTAGCAGTGGTGAAGGAGGCGCGGTGAT
GTGCTCGTCGGGGGTCTGTTGTATGTAAGCTATATTTGAAGCCCAAATTT
GTGGTTTGTGGTATCGTTTTGCTCATCGTTATTATCTTGTCAATTTTTGA
TAACACAAGATGTGGGGGATGCCAGCCTTGAGCGGTCATGTTTCGTTCTT
ATTGTCAGTATTTAATAAAACAAATTACCCCAAAACACAACGCGAAGGTC
GTGTTAGCCTTCGGCGGGAGGATTGCAGATTTTGTGGTACTTCAAAGCAC
ACATACATACGTTCATACCGTGTGCAGGGCGAAATGTTCATACGGAGTCC
CGCCCCGACGAACAGGGGCCCTGTAAACCCCTCTAGTTTTTGTCAGTCTG
TATGAAGGTATTGTTTCGTATGGAGGTACGCACGCTTGCCGTAACTTCTG
CGTCTGGGCGTTTTATACTACTTGTAGCGTGTGTGTACTTTCGGGCGTAC
ACCGATGAACGACTATGTGTGTGTGTTGTCATCCTTTTCATTGGACGCCA
CTCTACACCTTGCGGGTAGGTAGACGCTCCAACCGGGGTCACACAGGGGA
AAGTCAACACAGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig831:107750..113614-

>mRNA_P-littoralis_Contig831.24.1 ID=mRNA_P-littoralis_Contig831.24.1|Name=mRNA_P-littoralis_Contig831.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig831:107750..113614- (Pylaiella littoralis U1_48)
ATGAGATGCGGCGACAGCAGCAAGAACGGGGAGCTCGGGCGAAGAATGTC
CGCGGCCAGGGAGGCCGGCCAGCTCCCGCCCCTCGAGTGGACACCGGCGG
ACAGACGCGAGAGATGGACCTGGATGTTTCTGTCCTTCCGCGCCTTTCTC
CTGCGAACGGCGGCGGGGACAGCCGGACGGTTTCGCCTCGCGGGGGGGGG
GAGGCTCGCGCGAAGACTAGTAGAAGCTTGCTCCGCAGCGGGAGAGCAAG
GGTTTGTGCGCCACCCCTGGCCACGAGGGGCAATGCCTCCGGCGCTTCTC
CCTCCTTGCGCCTGA
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