mRNA_P-littoralis_Contig831.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig831.13.1
Unique NamemRNA_P-littoralis_Contig831.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig831.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig831contigP-littoralis_Contig831:45071..46096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size298
Hectar predicted targeting categorysignal peptide
Exons2
Cds size270
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791695.8305905-UTR-P-littoralis_Contig831:45070..450981680791695.8305905-UTR-P-littoralis_Contig831:45070..45098Pylaiella littoralis U1_48UTRP-littoralis_Contig831 45071..45098 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791695.8413577-CDS-P-littoralis_Contig831:45098..453071680791695.8413577-CDS-P-littoralis_Contig831:45098..45307Pylaiella littoralis U1_48CDSP-littoralis_Contig831 45099..45307 -
1680791695.8514807-CDS-P-littoralis_Contig831:46035..460961680791695.8514807-CDS-P-littoralis_Contig831:46035..46096Pylaiella littoralis U1_48CDSP-littoralis_Contig831 46036..46096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig831.13.1prot_P-littoralis_Contig831.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig831 45099..46096 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig831.13.1

>prot_P-littoralis_Contig831.13.1 ID=prot_P-littoralis_Contig831.13.1|Name=mRNA_P-littoralis_Contig831.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
MRLPGVIGAIWASSIIAAPEAGGAGPVLDTGTPLDIVSSLCAQPTQDGRR
TFVSVEQDLGLDDNAVSSSLRNACIGVKENNSGRTCGTD*
back to top

mRNA from alignment at P-littoralis_Contig831:45071..46096-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig831.13.1 ID=mRNA_P-littoralis_Contig831.13.1|Name=mRNA_P-littoralis_Contig831.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1026bp|location=Sequence derived from alignment at P-littoralis_Contig831:45071..46096- (Pylaiella littoralis U1_48)
ATGCGGCTGCCTGGGGTCATCGGAGCGATCTGGGCCAGCTCCATCATTGC
TGCCCCAGAAGGTACGACGTTCGACTATGATGTAGATTGTGTTGAAAGAT
GACGACGGTGAAAGTTTCGTGTCTCTTGTTTAGCTGTGTGTCGAAGTTTG
GCAGTGACGTGTTTTGGGCGCCGACCACCTACCTTCAACAGCAGCAGGAG
GCCCCTCATAGAGCCCACCCGGGCGTTCGCACTCCACAGATCGAAACTTC
TGTAGGTTATTCGAGTATGTCCATTGCCATGCGTTCCAGATGTGTTTAGA
ATTGTGCCCGACCTCAATCGGTCCACTACAAGTTGAGAAATGTTCTAAAA
TGTGTTAAAATAACAGCTCGTGGATCATCTGGTATTCTGGAGGTGACAAT
GACCCGAGTCACAGCAGCCAGTGCCCCATAAGGCAGTAAGTACTTCCGGA
GGACCGTGAAAGTTTCCCCCATCGTTAGTCATAGTACCTGGCCTGCGAAT
GGCGGTGGAATTGATGTTGTACATGGACTACAGCAGAAGAAAACCTTTTT
TTATGGTATGGGTCATGGTTCAGGATGAAGTCCCAACTTGTCGGGACCCC
ACGACAAGATCTCTATCGTGCATTGTGCTGTTCTCCGCGGCTGCGATATT
GAAAGATGGCTGAGACCAAGGAGAAGCACAAACAAAAAAACCCTATAGAG
GTCACGAATTGGGCACAATTCAAAACGTCGATACCGCAAGGCCTAAAATG
CCCCTAAAACGCTGTTATTGTACCGTTTTTACTATGCAGCCGGCGGAGCG
GGGCCCGTCTTGGACACCGGCACACCACTGGACATCGTCTCTTCGCTGTG
CGCCCAACCAACCCAGGATGGTCGGCGTACGTTCGTAAGCGTTGAGCAAG
ATCTAGGCCTTGATGACAACGCTGTATCCAGCTCACTACGCAATGCATGT
ATCGGAGTAAAGGAAAACAACTCAGGAAGGACCTGTGGGACAGACTAGGG
AAAAAGGGCGTGTATCGACGCCTTGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig831:45071..46096-

>mRNA_P-littoralis_Contig831.13.1 ID=mRNA_P-littoralis_Contig831.13.1|Name=mRNA_P-littoralis_Contig831.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig831:45071..46096- (Pylaiella littoralis U1_48)
ATGCGGCTGCCTGGGGTCATCGGAGCGATCTGGGCCAGCTCCATCATTGC
TGCCCCAGAAGCCGGCGGAGCGGGGCCCGTCTTGGACACCGGCACACCAC
TGGACATCGTCTCTTCGCTGTGCGCCCAACCAACCCAGGATGGTCGGCGT
ACGTTCGTAAGCGTTGAGCAAGATCTAGGCCTTGATGACAACGCTGTATC
CAGCTCACTACGCAATGCATGTATCGGAGTAAAGGAAAACAACTCAGGAA
GGACCTGTGGGACAGACTAG
back to top