mRNA_P-littoralis_Contig830.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig830.20.1
Unique NamemRNA_P-littoralis_Contig830.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig830.20.1 vs. uniprot
Match: D7G142_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G142_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.190e-36
Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 1
Query:    1 FLRRVEGCGGRALVHCIAGCSRSVSIVLLHLMESHRIRLKVAYDHVRSYRMVAQPNEGFRFQLATTEV 204
            FLR+VE CGGRALVHCIAGCSRSVS+VLLHLME HRIRLK+AY+HVRSYRMVAQPNEGFRFQLATTEV
Sbjct:  162 FLRQVEDCGGRALVHCIAGCSRSVSMVLLHLMEGHRIRLKLAYEHVRSYRMVAQPNEGFRFQLATTEV 229          
BLAST of mRNA_P-littoralis_Contig830.20.1 vs. uniprot
Match: F0YLX9_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLX9_AURAN)

HSP 1 Score: 87.8 bits (216), Expect = 8.290e-21
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    1 FLRRVEGCGGRALVHCIAGCSRSVSIVLLHLMESHRIRLKVAYDHVRSYRMVAQPNEGFRFQLATTEV 204
            FL+RVE  GGR LVHCIAG SRSV++ L+HLM SHR+ L V + HV   R  A PNEGF+ QLA  EV
Sbjct:   50 FLQRVERVGGRCLVHCIAGSSRSVTLTLMHLMISHRVPLHVGFHHVNRMRPQANPNEGFKLQLALLEV 117          
BLAST of mRNA_P-littoralis_Contig830.20.1 vs. uniprot
Match: A0A7S3YH23_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YH23_HETAK)

HSP 1 Score: 88.2 bits (217), Expect = 2.550e-19
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 FLRRVEGCGGRALVHCIAGCSRSVSIVLLHLMESHRIRLKVAYDHVRSYRMVAQPNEGFRFQLATTEV 204
            F++ VE  GGR LVHCIAG SRSVS+V++HLM SH++ L+VA+DH++S R    PN GF  QLA  EV
Sbjct:  205 FIQHVERLGGRVLVHCIAGVSRSVSLVIMHLMNSHQMYLRVAFDHIKSIRPYISPNNGFLLQLAKYEV 272          
BLAST of mRNA_P-littoralis_Contig830.20.1 vs. uniprot
Match: A0A8J2SU05_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SU05_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.300e-18
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    1 FLRRVEGCGGRALVHCIAGCSRSVSIVLLHLMESHRIRLKVAYDHVRSYRMVAQPNEGFRFQLATTEV 204
            FL+RVE  GGR LVHCIAG SRSV++ ++HLM SH + L VA+ H+   R  A PNEGF+ QLA  EV
Sbjct:  194 FLQRVERVGGRCLVHCIAGSSRSVALAIVHLMVSHHVPLHVAFHHINRMRPQANPNEGFKLQLALLEV 261          
BLAST of mRNA_P-littoralis_Contig830.20.1 vs. uniprot
Match: A0A7S2AYV9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AYV9_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.340e-16
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 FLRRVEGCGGRALVHCIAGCSRSVSIVLLHLMESHRIRLKVAYDHVRSYRMVAQPNEGFRFQLATTEV 204
            F++ +E  GGR LVHC+AGCSRSV +VL+HLM  H + L+  ++H++S R    PNEGF+  LA  EV
Sbjct:  170 FIQHIEEKGGRVLVHCVAGCSRSVCLVLMHLMVHHGVYLRDGWEHMKSVRPQMNPNEGFKLALAKLEV 237          
BLAST of mRNA_P-littoralis_Contig830.20.1 vs. uniprot
Match: A0A835ZC85_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC85_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.410e-16
Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    1 FLRRVEGCGGRALVHCIAGCSRSVSIVLLHLMES---------HRIRLKVAYDHVRSYRMVAQPNEGFRFQLATTE 201
            F+R VEG GGR LVHC+AGCSRSVS+V+ HLM +         H + L+ A  H+R +R +A PN+ F ++LA  E
Sbjct:  100 FMRNVEGIGGRVLVHCVAGCSRSVSVVITHLMAAVPAVRCALLHGLCLRTALAHIRRHRSLAYPNQAFLYELAVME 175          
BLAST of mRNA_P-littoralis_Contig830.20.1 vs. uniprot
Match: A0A7S3HR27_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HR27_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.000e-13
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 FLRRVEGCGGRALVHCIAGCSRSVSIVLLHLMESHRIRLKVAYDHVRSYRMVAQPNEGFRFQLATTEV 204
            FL  VE   GR L+HC+AG SRSVS++L+HLM  HR+ L+ ++ +VRS R    PN+ F+ QLA  EV
Sbjct:  230 FLSHVERVQGRVLLHCLAGVSRSVSVLLMHLMVRHRLCLQHSFRYVRSCRPQINPNDAFKLQLARLEV 297          
BLAST of mRNA_P-littoralis_Contig830.20.1 vs. uniprot
Match: A0A2G5C2E9_AQUCA (Uncharacterized protein n=2 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5C2E9_AQUCA)

HSP 1 Score: 70.1 bits (170), Expect = 3.240e-13
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 FLRRVEGCGGRALVHCIAGCSRSVSIVLLHLMESHRIRLKVAYDHVRSYRMVAQPNEGFRFQLATTEV 204
            F+   +  GG  LVHC AG SRSVSI++ +LM+ HR+ L  A +HV+S R  A PN GF  QL   E+
Sbjct:  100 FIEEAKKMGGAVLVHCFAGKSRSVSIIVAYLMKKHRMTLSQALEHVKSKRPQAAPNAGFLLQLQNFEI 167          
BLAST of mRNA_P-littoralis_Contig830.20.1 vs. uniprot
Match: UPI0014582FDA (dual specificity protein phosphatase 14-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014582FDA)

HSP 1 Score: 69.3 bits (168), Expect = 5.160e-13
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    4 LRRVEGCGGRALVHCIAGCSRSVSIVLLHLMESHRIRLKVAYDHVRSYRMVAQPNEGFRFQLATTE 201
            + +V   GGR LVHC+AG SRS S+ + +LM+ HR++L  AY+HV++ R V +PN GF  QL   E
Sbjct:   78 IHQVHNRGGRTLVHCVAGVSRSASLCIAYLMKYHRLKLVDAYNHVKARRPVIRPNAGFWTQLIDFE 143          
BLAST of mRNA_P-littoralis_Contig830.20.1 vs. uniprot
Match: A0A384BD76_BALAS (Protein-tyrosine-phosphatase n=1 Tax=Balaenoptera acutorostrata scammoni TaxID=310752 RepID=A0A384BD76_BALAS)

HSP 1 Score: 68.6 bits (166), Expect = 6.950e-13
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 1
Query:    1 FLRRVEGCGGRALVHCIAGCSRSVSIVLLHLMESHRIRLKVAYDHVRSYRMVAQPNEGFRFQLATTE 201
            F+  V+  GGR LVHC AG SRS +I L +L++SHR+RL  A+D V+  R V  PN GF  QL   E
Sbjct:   89 FIDSVKNSGGRVLVHCQAGISRSATICLAYLIQSHRVRLDEAFDFVKQRRGVISPNFGFMGQLLQFE 155          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig830.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G142_ECTSI1.190e-3691.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0YLX9_AURAN8.290e-2161.76Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S3YH23_HETAK2.550e-1958.82Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J2SU05_9STRA1.300e-1858.82Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2AYV9_9STRA1.340e-1651.47Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835ZC85_9STRA1.410e-1648.68Protein-tyrosine phosphatase-like protein n=1 Tax=... [more]
A0A7S3HR27_9STRA1.000e-1351.47Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A2G5C2E9_AQUCA3.240e-1348.53Uncharacterized protein n=2 Tax=Aquilegia coerulea... [more]
UPI0014582FDA5.160e-1348.48dual specificity protein phosphatase 14-like n=1 T... [more]
A0A384BD76_BALAS6.950e-1350.75Protein-tyrosine-phosphatase n=1 Tax=Balaenoptera ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig830contigP-littoralis_Contig830:101228..101834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G142
PFAMsDSPc
Model size207
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.95e-37
EggNOG OGsCOG2453@1|root,KOG1716@2759|Eukaryota
Descriptionprotein tyrosine/serine/threonine phosphatase activity
Cds size207
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791695.592232-CDS-P-littoralis_Contig830:101227..1012831680791695.592232-CDS-P-littoralis_Contig830:101227..101283Pylaiella littoralis U1_48CDSP-littoralis_Contig830 101228..101283 +
1680791695.6075327-CDS-P-littoralis_Contig830:101683..1018341680791695.6075327-CDS-P-littoralis_Contig830:101683..101834Pylaiella littoralis U1_48CDSP-littoralis_Contig830 101684..101834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig830.20.1prot_P-littoralis_Contig830.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig830 101228..101834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig830.20.1

>prot_P-littoralis_Contig830.20.1 ID=prot_P-littoralis_Contig830.20.1|Name=mRNA_P-littoralis_Contig830.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
FLRRVEGCGGRALVHCIAGCSRSVSIVLLHLMESHRIRLKVAYDHVRSYR
MVAQPNEGFRFQLATTEV*
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mRNA from alignment at P-littoralis_Contig830:101228..101834+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig830.20.1 ID=mRNA_P-littoralis_Contig830.20.1|Name=mRNA_P-littoralis_Contig830.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=607bp|location=Sequence derived from alignment at P-littoralis_Contig830:101228..101834+ (Pylaiella littoralis U1_48)
TTCCTTCGTCGGGTCGAGGGCTGCGGCGGGCGTGCTCTCGTCCACTGCAT CGCGGGGTGAGAGGGGAACGGCAAAACGCTGCACTAGAATTAGAAGTTGT CCGCAAGCTGAAACGATGAGACGTGTAAGTGAAAGGTGGGGAAGACCAGA CCAACAATACCATATACGGAGTATTATGTGGTAGTGACCAGCGCGTGCTC AATGAAAAGCTGAAACCACAAAAGGAGGCGTGGAAGAGGGGGAGAAATGC GTGCCGCTGATTGTTTACCGACGAATCGGTCTTCGCCAGTCGCGCGCTCT CACTCGCCGCATCGGGGAGGGACAATGGAAAAACAAGAAAAAAGCAACAA CAACAGCTCATGCCCCACGCATATTCTGTACAACCAACAGAGCAGCACAT CCTGGACGGTCAATAAAAAACCAATTTACACTCTACCAAACAAACGTTAC GATCAGGTGCTCTCGGTCGGTGTCGATAGTGCTGCTGCACCTGATGGAGA GCCACCGAATACGGCTGAAGGTGGCGTACGACCACGTGAGATCCTACCGT ATGGTGGCGCAACCCAACGAGGGGTTTCGGTTCCAGCTGGCAACCACCGA GGTATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig830:101228..101834+

>mRNA_P-littoralis_Contig830.20.1 ID=mRNA_P-littoralis_Contig830.20.1|Name=mRNA_P-littoralis_Contig830.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig830:101228..101834+ (Pylaiella littoralis U1_48)
TTCCTTCGTCGGGTCGAGGGCTGCGGCGGGCGTGCTCTCGTCCACTGCAT
CGCGGGGTGCTCTCGGTCGGTGTCGATAGTGCTGCTGCACCTGATGGAGA
GCCACCGAATACGGCTGAAGGTGGCGTACGACCACGTGAGATCCTACCGT
ATGGTGGCGCAACCCAACGAGGGGTTTCGGTTCCAGCTGGCAACCACCGA
GGTATGA
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