mRNA_P-littoralis_Contig12.160.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig12.160.1
Unique Name	mRNA_P-littoralis_Contig12.160.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig12.160.1 vs. uniprot
Match: A0A6H5KQX7_9PHAE (HTH psq-type domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX7_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 3.140e-56
Identity = 92/100 (92.00%), Postives = 95/100 (95.00%), Query Frame = 1

Query:    1 DEE*VRKACAAIDDGMSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDVLLFSARNYLAVDRVHLRDAVRRPCNDGRRIPWDPEKG 300
            DEE VRKACAAIDDGMSVRKAA VFGVGRTSIEDRRRGKVAMNAKVG ETILSKEEEDSLED+LLF+ARN+LAV RVHLRDAVRR CNDGRRIPWDPEKG
Sbjct:    7 DEEQVRKACAAIDDGMSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKG 106

[Close]

BLAST of mRNA_P-littoralis_Contig12.160.1 vs. uniprot
Match: A0A6H5JRY4_9PHAE (HTH psq-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY4_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 2.130e-55
Identity = 92/100 (92.00%), Postives = 95/100 (95.00%), Query Frame = 1

Query:    1 DEE*VRKACAAIDDGMSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDVLLFSARNYLAVDRVHLRDAVRRPCNDGRRIPWDPEKG 300
            DEE VRKACAAIDDGMSVRKAA VFGVGRTSIEDRRRGKVAMNAKVG ETILSKEEEDSLED+LLF+ARN+LAV RVHLRDAVRR CNDGRRIPWDPEKG
Sbjct:    7 DEEQVRKACAAIDDGMSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKG 106

[Close]

BLAST of mRNA_P-littoralis_Contig12.160.1 vs. uniprot
Match: A0A6H5K547_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K547_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 3.090e-52
Identity = 90/100 (90.00%), Postives = 95/100 (95.00%), Query Frame = 1

Query:    1 DEE*VRKACAAIDDGMSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDVLLFSARNYLAVDRVHLRDAVRRPCNDGRRIPWDPEKG 300
            DEE VRKA AAID+GMSVRKAA VFGVGRTSIEDRRRGKVAMNAKVGPETILS+EEEDSLED+LL +ARN+LAVDRVHLRDAVRR CNDGRRIPWDPEKG
Sbjct:    7 DEEKVRKAFAAIDNGMSVRKAAEVFGVGRTSIEDRRRGKVAMNAKVGPETILSREEEDSLEDILLVAARNFLAVDRVHLRDAVRRLCNDGRRIPWDPEKG 106

[Close]

BLAST of mRNA_P-littoralis_Contig12.160.1 vs. uniprot
Match: A0A6H5JFM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM5_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 5.110e-52
Identity = 92/100 (92.00%), Postives = 95/100 (95.00%), Query Frame = 1

Query:    1 DEE*VRKACAAIDDGMSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDVLLFSARNYLAVDRVHLRDAVRRPCNDGRRIPWDPEKG 300
            DEE VRKACAAIDDGMSVRKAA VFGVGRTSIEDRRRGKVAMNAKVG ETILSKEEEDSLED+LLF+ARN+LAV RVHLRDAVRR CNDGRRIPWDPEKG
Sbjct:    7 DEEQVRKACAAIDDGMSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKG 106

[Close]

BLAST of mRNA_P-littoralis_Contig12.160.1 vs. uniprot
Match: A0A6H5KJ62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ62_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 1.340e-51
Identity = 90/100 (90.00%), Postives = 95/100 (95.00%), Query Frame = 1

Query:    1 DEE*VRKACAAIDDGMSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDVLLFSARNYLAVDRVHLRDAVRRPCNDGRRIPWDPEKG 300
            DEE VRKA AAID+GMSVRKAA VFGVGRTSIEDRRRGKVAMNAKVGPETILS+EEEDSLED+LL +ARN+LAVDRVHLRDAVRR CNDGRRIPWDPEKG
Sbjct:    7 DEEKVRKAFAAIDNGMSVRKAAEVFGVGRTSIEDRRRGKVAMNAKVGPETILSREEEDSLEDILLVAARNFLAVDRVHLRDAVRRLCNDGRRIPWDPEKG 106

[Close]

BLAST of mRNA_P-littoralis_Contig12.160.1 vs. uniprot
Match: A0A6H5JRA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA3_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 1.230e-50
Identity = 90/100 (90.00%), Postives = 94/100 (94.00%), Query Frame = 1

Query:    1 DEE*VRKACAAIDDGMSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDVLLFSARNYLAVDRVHLRDAVRRPCNDGRRIPWDPEKG 300
            DEE VRKACAAIDDGMSVRKAA VFGVGRTSI DRRRGK AMNAKVGPETILSKEEEDSLE +LLF+ARN+LAVDRV+LRDAVRR CNDGRRIPWDPEKG
Sbjct:    7 DEEQVRKACAAIDDGMSVRKAAEVFGVGRTSIVDRRRGKAAMNAKVGPETILSKEEEDSLEYILLFAARNFLAVDRVYLRDAVRRLCNDGRRIPWDPEKG 106

[Close]

BLAST of mRNA_P-littoralis_Contig12.160.1 vs. uniprot
Match: D7G6G3_ECTSI (Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G3_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 4.420e-46
Identity = 88/111 (79.28%), Postives = 91/111 (81.98%), Query Frame = 1

Query:    1 DEE*VRKACAAIDDGMSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDVLLFSARNYLAVDRVHLRDAVRR-PCNDGRRIPWDPEKGGERLACGLPS 330
            DEE VRKACAAIDDGMSVRKAA VFGVGRTSI DRRRGKVAMN KVGPETILSKEEEDSLE +LLF+ARN LAVDRVHLRDAVRR      RR+       GERLACGL S
Sbjct:    7 DEEQVRKACAAIDDGMSVRKAAEVFGVGRTSIADRRRGKVAMNTKVGPETILSKEEEDSLEHILLFAARNLLAVDRVHLRDAVRRLSIGIQRRV-------GERLACGLSS 110

[Close]

BLAST of mRNA_P-littoralis_Contig12.160.1 vs. uniprot
Match: A0A6H5JRN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRN0_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.530e-45
Identity = 83/99 (83.84%), Postives = 87/99 (87.88%), Query Frame = 1

Query:    1 DEE*VRKACAAIDDGMSVRKAA-----AVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDVLLFSARNYLAVDRVHLRDAVRRPCNDGRRIP 282
            DEE VRKA AAI DGMSVRKAA     + FGVG  SIEDRRRGKVAMNAKVGPETILSKEEEDSLED+LLF+ARN+LAVDRVHLRDAVRR CNDGRRIP
Sbjct:    7 DEEQVRKAYAAIGDGMSVRKAAXGLLRSFFGVGHMSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDILLFAARNFLAVDRVHLRDAVRRLCNDGRRIP 105

[Close]

BLAST of mRNA_P-littoralis_Contig12.160.1 vs. uniprot
Match: A0A6H5JSC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC6_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 3.640e-45
Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 1

Query:    1 DEE*VRKACAAIDDGMSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDVLLFSARNYLAVDRVHLRDAVRRPCNDGRRIP 282
            DEE VRKACAAIDD MS R AA VFG+GRTSIEDRRRGKVAMNAKVGPETILS EEED LED+LLF+ARN+LAVDRVHLR AVRR CNDGRRIP
Sbjct:    7 DEEQVRKACAAIDDDMSDR-AAEVFGLGRTSIEDRRRGKVAMNAKVGPETILSNEEEDPLEDILLFAARNFLAVDRVHLRGAVRRLCNDGRRIP 99

[Close]

BLAST of mRNA_P-littoralis_Contig12.160.1 vs. uniprot
Match: A0A6H5K4M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M5_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 2.130e-43
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 1

Query:   46 MSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDVLLFSARNYLAVDRVHLRDAVRRPCNDGRRIPWDPEKG 300
            MSVRKAA VFGVGRTSIEDRRRGKVAMNAKVG ETILSKEEEDSLED+LLF+ARN+LAV RVHLRDAVRR CNDGRRIPWDPEKG
Sbjct:    1 MSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKG 85

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig12.160.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig12.160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KQX7_9PHAE	3.140e-56	92.00	HTH psq-type domain-containing protein (Fragment) ...	[more]
A0A6H5JRY4_9PHAE	2.130e-55	92.00	HTH psq-type domain-containing protein n=4 Tax=Ect...	[more]
A0A6H5K547_9PHAE	3.090e-52	90.00	HTH psq-type domain-containing protein n=1 Tax=Ect...	[more]
A0A6H5JFM5_9PHAE	5.110e-52	92.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KJ62_9PHAE	1.340e-51	90.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRA3_9PHAE	1.230e-50	90.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G6G3_ECTSI	4.420e-46	79.28	Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
A0A6H5JRN0_9PHAE	1.530e-45	83.84	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JSC6_9PHAE	3.640e-45	86.17	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K4M5_9PHAE	2.130e-43	91.76	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig12	contig	P-littoralis_Contig12:687616..688119 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	504
Hectar predicted targeting category	other localisation
Exons	1
Cds size	459

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789511.0448196-UTR-P-littoralis_Contig12:687615..687660	1680789511.0448196-UTR-P-littoralis_Contig12:687615..687660	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig12 687616..687660 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789511.0572634-CDS-P-littoralis_Contig12:687660..688119	1680789511.0572634-CDS-P-littoralis_Contig12:687660..688119	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig12 687661..688119 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig12.160.1	prot_P-littoralis_Contig12.160.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig12 687661..688119 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig12:687616..688119+
coding sequence from alignment at P-littoralis_Contig12:687616..688119+

protein sequence of mRNA_P-littoralis_Contig12.160.1

>prot_P-littoralis_Contig12.160.1 ID=prot_P-littoralis_Contig12.160.1|Name=mRNA_P-littoralis_Contig12.160.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=153bp
MSVRKAAAVFGVGRTSIEDRRRGKVAMNAKVGPETILSKEEEDSLEDVLL
FSARNYLAVDRVHLRDAVRRPCNDGRRIPWDPEKGGERLACGLPSWAPTA
GGALDPHLRGKQDHRRRGASHGVVLREMGSSPRRGQTGGQPRAQHGRFAR
RL*

mRNA from alignment at P-littoralis_Contig12:687616..688119+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig12.160.1 ID=mRNA_P-littoralis_Contig12.160.1|Name=mRNA_P-littoralis_Contig12.160.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=504bp|location=Sequence derived from alignment at P-littoralis_Contig12:687616..688119+ (Pylaiella littoralis U1_48)
GACGAAGAGTAGGTTCGGAAGGCCTGTGCAGCGATAGATGATGGCATGTC
GGTTAGGAAGGCTGCTGCGGTCTTCGGGGTAGGTCGTACATCCATCGAAG
ACCGCCGCCGTGGCAAGGTGGCCATGAACGCGAAGGTTGGTCCCGAGACC
ATCCTGAGCAAAGAAGAGGAGGATTCGCTAGAAGATGTTCTGCTGTTTTC
TGCTCGCAACTACTTGGCTGTGGATCGGGTTCACCTCAGAGATGCGGTGC
GACGACCCTGCAACGACGGTCGGCGGATCCCTTGGGATCCAGAGAAGGGC
GGGGAAAGATTGGCTTGCGGGCTTCCTTCGTGGGCACCCACGGCTGGCGG
AGCGCTCGACCCGCATCTACGAGGCAAACAGGATCACCGAAGAAGAGGAG
CCTCGCATGGTGTAGTTCTACGAGAGATGGGCAGCTCTCCTCGACGAGGT
CAAACCGGAGGCCAACCACGTGCACAACACGGACGATTCGCTCGTAGACT
CTAG

Coding sequence (CDS) from alignment at P-littoralis_Contig12:687616..688119+

>mRNA_P-littoralis_Contig12.160.1 ID=mRNA_P-littoralis_Contig12.160.1|Name=mRNA_P-littoralis_Contig12.160.1|organism=Pylaiella littoralis U1_48|type=CDS|length=459bp|location=Sequence derived from alignment at P-littoralis_Contig12:687616..688119+ (Pylaiella littoralis U1_48)
ATGTCGGTTAGGAAGGCTGCTGCGGTCTTCGGGGTAGGTCGTACATCCAT
CGAAGACCGCCGCCGTGGCAAGGTGGCCATGAACGCGAAGGTTGGTCCCG
AGACCATCCTGAGCAAAGAAGAGGAGGATTCGCTAGAAGATGTTCTGCTG
TTTTCTGCTCGCAACTACTTGGCTGTGGATCGGGTTCACCTCAGAGATGC
GGTGCGACGACCCTGCAACGACGGTCGGCGGATCCCTTGGGATCCAGAGA
AGGGCGGGGAAAGATTGGCTTGCGGGCTTCCTTCGTGGGCACCCACGGCT
GGCGGAGCGCTCGACCCGCATCTACGAGGCAAACAGGATCACCGAAGAAG
AGGAGCCTCGCATGGTGTAGTTCTACGAGAGATGGGCAGCTCTCCTCGAC
GAGGTCAAACCGGAGGCCAACCACGTGCACAACACGGACGATTCGCTCGT
AGACTCTAG