mRNA_P-littoralis_Contig829.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig829.5.1
Unique NamemRNA_P-littoralis_Contig829.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig829.5.1 vs. uniprot
Match: A0A6H5L0I5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I5_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.440e-39
Identity = 83/165 (50.30%), Postives = 102/165 (61.82%), Query Frame = -1 
Query:    4 LLVTLIIAGAPARALWNSHKDQLMTDYLFHMSEASACENTLRQLDLMLAKHGKTTESVGLPRVTHPDTEYHRLLAAFDRIEMRTDADSIIPQLNKEQKAVFDAVTNSVATNSGGAFMIDAPAGSGKTFTMNAISADLRAKGKLVLCTASTGIAALLLPGGLTAHS 498
            L VTLI+ GAPA+ LW         D   +MS+  A    LRQ+DL+L  HG+T E VGLP V H DTEY R    FD  +M    D  +  L  EQ+ V+D V +SV + +   FMIDAPAG+GKT+T + + A LR+  KLVLC ASTGIA L LPGG TAHS
Sbjct:  363 LFVTLILDGAPAKILWEQFNQDFTEDLRINMSDRDANNTALRQIDLVLQHHGRTNEVVGLPAVIHLDTEYIRFKHMFDPAQMSAFVDEHLANLTHEQRHVYDTVVSSVTSGASNLFMIDAPAGTGKTYTESILCARLRSMSKLVLCVASTGIAGLQLPGGWTAHS 527
[Close]
BLAST of mRNA_P-littoralis_Contig829.5.1 vs. uniprot
Match: A0A6H5JZJ6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ6_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 3.210e-38
Identity = 82/165 (49.70%), Postives = 100/165 (60.61%), Query Frame = -1 
Query:    4 LLVTLIIAGAPARALWNSHKDQLMTDYLFHMSEASACENTLRQLDLMLAKHGKTTESVGLPRVTHPDTEYHRLLAAFDRIEMRTDADSIIPQLNKEQKAVFDAVTNSVATNSGGAFMIDAPAGSGKTFTMNAISADLRAKGKLVLCTASTGIAALLLPGGLTAHS 498
            L VTLI+ GAPA+ LW         D   +MS+  A    LRQ+DL L  HG+T E VGL  V H DTEY R    FD  +M    D  +  L  EQ+ V+D V +SV + +   FMIDAPAG+GKT+T + + A LR+  KLVLC ASTGIA L LPGG TAHS
Sbjct:  200 LFVTLILDGAPAKILWEQFNQDFTEDLRINMSDRDANNTALRQIDLGLQHHGRTNEVVGLTAVVHLDTEYMRFKHMFDPAQMSAFVDEHLANLTHEQRHVYDTVVSSVTSGASNLFMIDAPAGTGKTYTESILCARLRSMSKLVLCVASTGIAGLQLPGGWTAHS 364
[Close]
BLAST of mRNA_P-littoralis_Contig829.5.1 vs. uniprot
Match: UPI001ED8AEFB (ATP-dependent DNA helicase PIF1-like n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8AEFB)

HSP 1 Score: 108 bits (269), Expect = 1.730e-25
Identity = 67/167 (40.12%), Postives = 92/167 (55.09%), Query Frame = -1 
Query:    4 LLVTLIIAGAPARALWNSHKDQLMTDYLFHMSEASACENTLRQLDLMLAKHGKTTESVGLPRVTHPDTEYHRLLAAFDRIEMRTDADSIIPQLNKEQKAVFDAVTNSVATNS--GGAFMIDAPAGSGKTFTMNAISADLRAKGKLVLCTASTGIAALLLPGGLTAHS 498
            L   +I+ GAPA  LW   K  L  DY   + E +A  + L  +D ML  HG+    +GLP V    TE  R    ++  +     +   P+L +EQ +V DAV  +V         F ID P+G+GKT  +N ++A +RA+G +VLCTASTGIAAL   GG+TAHS
Sbjct:   31 LFFAVIMFGAPAAVLWERFKGPLSEDYAGRLDERAAYHHALCDIDHMLRPHGRCLRDMGLPEVEDVTTEVGREEVRWNPEDAARAVEEWRPKLTEEQLSVVDAVITAVRNVQMRDRVFFIDGPSGTGKTVVLNHLTARMRAEGAIVLCTASTGIAALNHQGGITAHS 197
[Close]
BLAST of mRNA_P-littoralis_Contig829.5.1 vs. uniprot
Match: UPI001ED8867E (uncharacterized protein LOC124173554 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8867E)

HSP 1 Score: 111 bits (277), Expect = 2.920e-25
Identity = 71/167 (42.51%), Postives = 95/167 (56.89%), Query Frame = -1 
Query:    4 LLVTLIIAGAPARALWNSHKDQLMTDYLFHMSEAS-ACENTLRQLDLMLAKHGKTTESVGLPRVTHPDTEYHRLLAAFDRIEMRTDADSIIPQLNKEQKAVFDAVTNSVA-TNSGGAFMIDAPAGSGKTFTMNAISADLRAKGKLVLCTASTGIAALLLPGGLTAHS 498
            L   +I+ GAPA  LW   KD L  DY+ +   A  A    L  +D ML  HG+    +GLP V    TE  R +  +D  +    A    P+L +EQ +V DA+ N+V   +    F ID P+G+GKT  +N I+A LR++G +VLCTASTGIAAL   GG+TAHS
Sbjct:  990 LFFAVIMFGAPAAILWEKFKDCLSEDYMGNEDNARIAHRRALCDIDHMLRPHGRCLRDMGLPEVEDVSTELGREVTRWDAEDAARSALEWRPKLTEEQLSVSDAIINAVTGEDENKVFFIDGPSGTGKTVVLNYITARLRSEGAVVLCTASTGIAALNHLGGITAHS 1156
[Close]
BLAST of mRNA_P-littoralis_Contig829.5.1 vs. uniprot
Match: UPI001ED8B841 (uncharacterized protein LOC124164452 n=3 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8B841)

HSP 1 Score: 109 bits (272), Expect = 1.310e-24
Identity = 67/167 (40.12%), Postives = 92/167 (55.09%), Query Frame = -1 
Query:    4 LLVTLIIAGAPARALWNSHKDQLMTDYLFHMSEASACENTLRQLDLMLAKHGKTTESVGLPRVTHPDTEYHRLLAAFDRIEMRTDADSIIPQLNKEQKAVFDAVTNSVATNS--GGAFMIDAPAGSGKTFTMNAISADLRAKGKLVLCTASTGIAALLLPGGLTAHS 498
            L   +I+ GAPA  LW   K  L  DY   + E +A  + L  +D ML  HG+    +GLP V    TE  R    ++  +     +   P+L +EQ +V DAV  +V         F ID P+G+GKT  +N ++A +RA+G +VLCTASTGIAAL   GG+TAHS
Sbjct:  669 LFFAVIMFGAPAAVLWERFKGPLSEDYTGRLDERAAYHHALCDIDHMLRPHGRCLRDMGLPEVEDVTTEVGREEVRWNPEDAARAVEEWRPKLTEEQLSVVDAVITAVRNGQMRDRVFFIDGPSGTGKTVVLNHLTARMRAEGAIVLCTASTGIAALNHQGGITAHS 835
[Close]
BLAST of mRNA_P-littoralis_Contig829.5.1 vs. uniprot
Match: UPI001ED876D1 (ATP-dependent DNA helicase PIF2-like n=2 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED876D1)

HSP 1 Score: 108 bits (269), Expect = 1.780e-24
Identity = 67/167 (40.12%), Postives = 92/167 (55.09%), Query Frame = -1 
Query:    4 LLVTLIIAGAPARALWNSHKDQLMTDYLFHMSEASACENTLRQLDLMLAKHGKTTESVGLPRVTHPDTEYHRLLAAFDRIEMRTDADSIIPQLNKEQKAVFDAVTNSVAT--NSGGAFMIDAPAGSGKTFTMNAISADLRAKGKLVLCTASTGIAALLLPGGLTAHS 498
            L   +I+ GAPA  LW   K  L  DY   + E +A  + L  +D ML  HG+    +GLP V    TE  R    ++  +     +   P+L +EQ +V DAV  +V         F ID P+G+GKT  +N ++A +RA+G +VLCTASTGIAAL   GG+TAHS
Sbjct:   31 LFFAVIMFGAPAAVLWERFKGPLSEDYAGRLDERAAYHHALCDIDHMLRPHGRCLRDMGLPEVEDVTTEVGREEVRWNPEDAARAVEEWRPKLTEEQLSVVDAVITAVRNVHMRDRVFFIDGPSGTGKTVVLNHLTARMRAEGAIVLCTASTGIAALNHQGGITAHS 197
[Close]
BLAST of mRNA_P-littoralis_Contig829.5.1 vs. uniprot
Match: UPI001ED88C40 (uncharacterized protein LOC124170300 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED88C40)

HSP 1 Score: 108 bits (271), Expect = 1.790e-24
Identity = 69/167 (41.32%), Postives = 97/167 (58.08%), Query Frame = -1 
Query:    4 LLVTLIIAGAPARALWNSHKDQLMTDYLFHMSEAS-ACENTLRQLDLMLAKHGKTTESVGLPRVTHPDTEYHRLLAAFDRIEMRTDADSIIPQLNKEQKAVFDAVTNSVA-TNSGGAFMIDAPAGSGKTFTMNAISADLRAKGKLVLCTASTGIAALLLPGGLTAHS 498
            L   +I+ GAPA  LW+  KD L  DY+ +   A  A    L  +D ML  HG+    +GLP V    TE  R +  ++  +    A+    +L +EQ +V DA+ N+V   ++   F ID P+G+GKT  +N I+A LR++G +VLCTASTGIAAL   GG+TAHS
Sbjct:  669 LFFAVIMFGAPAAILWDKFKDCLSEDYMGNEDNARIAHHRALCDIDHMLRPHGRCLRDLGLPEVEDVSTELGREVTRWNSEDAARSAEEWRHKLTEEQLSVSDAIINAVTGEDANKVFFIDGPSGTGKTVVLNYITARLRSEGAVVLCTASTGIAALNHLGGITAHS 835
[Close]
BLAST of mRNA_P-littoralis_Contig829.5.1 vs. uniprot
Match: UPI001ED8A18C (ATP-dependent DNA helicase PIF1-like n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8A18C)

HSP 1 Score: 108 bits (269), Expect = 2.610e-24
Identity = 67/167 (40.12%), Postives = 92/167 (55.09%), Query Frame = -1 
Query:    4 LLVTLIIAGAPARALWNSHKDQLMTDYLFHMSEASACENTLRQLDLMLAKHGKTTESVGLPRVTHPDTEYHRLLAAFDRIEMRTDADSIIPQLNKEQKAVFDAVTNSVATNS--GGAFMIDAPAGSGKTFTMNAISADLRAKGKLVLCTASTGIAALLLPGGLTAHS 498
            L   +I+ GAPA  LW   K  L  DY   + E +A  + L  +D ML  HG+    +GLP V    TE  R    ++  +     +   P+L +EQ +V DAV  +V         F ID P+G+GKT  +N ++A +RA+G +VLCTASTGIAAL   GG+TAHS
Sbjct:   31 LFFAVIMFGAPAAVLWERFKGPLSEDYAGRLDERAAYHHALCDIDHMLRPHGRCLRDMGLPEVEDVTTELGREEVRWNPEDAARAVEEWRPKLTEEQLSVVDAVITAVRNVQMRDRVFFIDGPSGTGKTVVLNHLTARMRAEGAIVLCTASTGIAALNHQGGITAHS 197
[Close]
BLAST of mRNA_P-littoralis_Contig829.5.1 vs. uniprot
Match: UPI001ED8AA0A (ATP-dependent DNA helicase PIF2-like n=2 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8AA0A)

HSP 1 Score: 107 bits (268), Expect = 2.820e-24
Identity = 67/167 (40.12%), Postives = 92/167 (55.09%), Query Frame = -1 
Query:    4 LLVTLIIAGAPARALWNSHKDQLMTDYLFHMSEASACENTLRQLDLMLAKHGKTTESVGLPRVTHPDTEYHRLLAAFDRIEMRTDADSIIPQLNKEQKAVFDAVTNSVATNS--GGAFMIDAPAGSGKTFTMNAISADLRAKGKLVLCTASTGIAALLLPGGLTAHS 498
            L   +I+ GAPA  LW   K  L  DY   + E +A  + L  +D ML  HG+    +GLP V    TE  R    ++  +     +   P+L +EQ +V DAV  +V         F ID P+G+GKT  +N ++A +RA+G +VLCTASTGIAAL   GG+TAHS
Sbjct:   31 LFFAVIMFGAPAAVLWERFKGPLSEDYSGRLDERAAYHHALCDIDHMLRPHGRCLRDMGLPEVEDVTTELGREEVRWNPEDAARAVEEWRPKLTEEQLSVVDAVITAVRNVQIRDRVFFIDGPSGTGKTVVLNHLTARMRAEGAIVLCTASTGIAALNHQGGITAHS 197
[Close]
BLAST of mRNA_P-littoralis_Contig829.5.1 vs. uniprot
Match: UPI001ED8A19D (uncharacterized protein LOC124163002 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8A19D)

HSP 1 Score: 108 bits (269), Expect = 3.010e-24
Identity = 67/167 (40.12%), Postives = 92/167 (55.09%), Query Frame = -1 
Query:    4 LLVTLIIAGAPARALWNSHKDQLMTDYLFHMSEASACENTLRQLDLMLAKHGKTTESVGLPRVTHPDTEYHRLLAAFDRIEMRTDADSIIPQLNKEQKAVFDAVTNSVATNS--GGAFMIDAPAGSGKTFTMNAISADLRAKGKLVLCTASTGIAALLLPGGLTAHS 498
            L   +I+ GAPA  LW   K  L  DY   + E +A  + L  +D ML  HG+    +GLP V    TE  R    ++  +     +   P+L +EQ +V DAV  +V         F ID P+G+GKT  +N ++A +RA+G +VLCTASTGIAAL   GG+TAHS
Sbjct:  209 LFFAVIMFGAPAAVLWERFKGPLSEDYAGRLDERAAYHHALCDIDHMLRPHGRCLRDMGLPEVEDVTTEVGREEVRWNPEDAARAVEEWRPKLTEEQLSVVDAVITAVRNVQMRDRVFFIDGPSGTGKTVVLNHLTARMRAEGAIVLCTASTGIAALNHQGGITAHS 375
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig829.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0I5_9PHAE1.440e-3950.30ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JZJ6_9PHAE3.210e-3849.70ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
UPI001ED8AEFB1.730e-2540.12ATP-dependent DNA helicase PIF1-like n=1 Tax=Ischn... [more]
UPI001ED8867E2.920e-2542.51uncharacterized protein LOC124173554 n=1 Tax=Ischn... [more]
UPI001ED8B8411.310e-2440.12uncharacterized protein LOC124164452 n=3 Tax=Ischn... [more]
UPI001ED876D11.780e-2440.12ATP-dependent DNA helicase PIF2-like n=2 Tax=Ischn... [more]
UPI001ED88C401.790e-2441.32uncharacterized protein LOC124170300 n=1 Tax=Ischn... [more]
UPI001ED8A18C2.610e-2440.12ATP-dependent DNA helicase PIF1-like n=1 Tax=Ischn... [more]
UPI001ED8AA0A2.820e-2440.12ATP-dependent DNA helicase PIF2-like n=2 Tax=Ischn... [more]
UPI001ED8A19D3.010e-2440.12uncharacterized protein LOC124163002 n=1 Tax=Ischn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig829contigP-littoralis_Contig829:6511..7008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size498
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791686.0800269-UTR-P-littoralis_Contig829:6510..65961680791686.0800269-UTR-P-littoralis_Contig829:6510..6596Pylaiella littoralis U1_48UTRP-littoralis_Contig829 6511..6596 -
1680791686.1078734-UTR-P-littoralis_Contig829:6908..70081680791686.1078734-UTR-P-littoralis_Contig829:6908..7008Pylaiella littoralis U1_48UTRP-littoralis_Contig829 6909..7008 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791686.0957308-CDS-P-littoralis_Contig829:6596..69081680791686.0957308-CDS-P-littoralis_Contig829:6596..6908Pylaiella littoralis U1_48CDSP-littoralis_Contig829 6597..6908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig829.5.1prot_P-littoralis_Contig829.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig829 6597..6908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig829.5.1

>prot_P-littoralis_Contig829.5.1 ID=prot_P-littoralis_Contig829.5.1|Name=mRNA_P-littoralis_Contig829.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MAFIVNVFPEPAGASIMKAPPELVATEFVTASKTAFCSLLSWGMMLSASV
RISILSKAASSRWYSVSGCVTRGKPTDSVVLPCLASIKSSCLRVFSQAEA
SDM*
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mRNA from alignment at P-littoralis_Contig829:6511..7008-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig829.5.1 ID=mRNA_P-littoralis_Contig829.5.1|Name=mRNA_P-littoralis_Contig829.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=498bp|location=Sequence derived from alignment at P-littoralis_Contig829:6511..7008- (Pylaiella littoralis U1_48)
CGTGGAGTGTGCGGTCAGGCCACCGGGGAGGAGAAGCGCAGCTATACCGG
TGGAAGCGGTGCACAGAACGAGCTTGCCTTTGGCTCGCAGGTCTGCGGAA
ATGGCGTTCATCGTGAATGTTTTTCCTGAGCCAGCTGGTGCGTCGATCAT
GAAAGCACCCCCCGAGTTGGTCGCGACGGAATTTGTGACAGCGTCGAAGA
CAGCCTTTTGTTCTTTGTTAAGCTGGGGTATGATGCTGTCAGCGTCGGTT
CGCATTTCTATCCTGTCGAAGGCGGCGAGCAGCCGGTGGTACTCTGTATC
TGGGTGTGTTACACGAGGCAAGCCGACGGACTCTGTCGTCTTACCGTGTT
TAGCGAGCATCAAGTCTAGTTGCCTTAGGGTATTTTCGCAAGCAGAGGCT
TCAGACATGTGAAAAAGGTAGTCGGTCATCAGTTGGTCCTTGTGGGAGTT
CCAGAGGGCGCGTGCGGGAGCGCCTGCAATAATTAGCGTCACGAGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig829:6511..7008-

>mRNA_P-littoralis_Contig829.5.1 ID=mRNA_P-littoralis_Contig829.5.1|Name=mRNA_P-littoralis_Contig829.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig829:6511..7008- (Pylaiella littoralis U1_48)
ATGGCGTTCATCGTGAATGTTTTTCCTGAGCCAGCTGGTGCGTCGATCAT
GAAAGCACCCCCCGAGTTGGTCGCGACGGAATTTGTGACAGCGTCGAAGA
CAGCCTTTTGTTCTTTGTTAAGCTGGGGTATGATGCTGTCAGCGTCGGTT
CGCATTTCTATCCTGTCGAAGGCGGCGAGCAGCCGGTGGTACTCTGTATC
TGGGTGTGTTACACGAGGCAAGCCGACGGACTCTGTCGTCTTACCGTGTT
TAGCGAGCATCAAGTCTAGTTGCCTTAGGGTATTTTCGCAAGCAGAGGCT
TCAGACATGTGA
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