mRNA_P-littoralis_Contig828.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig828.23.1
Unique NamemRNA_P-littoralis_Contig828.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig828.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig828contigP-littoralis_Contig828:59754..61217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size247
Hectar predicted targeting categoryother localisation
Exons3
Cds size228
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791685.6762593-UTR-P-littoralis_Contig828:59753..597711680791685.6762593-UTR-P-littoralis_Contig828:59753..59771Pylaiella littoralis U1_48UTRP-littoralis_Contig828 59754..59771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791685.7015934-CDS-P-littoralis_Contig828:59771..598401680791685.7015934-CDS-P-littoralis_Contig828:59771..59840Pylaiella littoralis U1_48CDSP-littoralis_Contig828 59772..59840 +
1680791685.7140048-CDS-P-littoralis_Contig828:60164..602411680791685.7140048-CDS-P-littoralis_Contig828:60164..60241Pylaiella littoralis U1_48CDSP-littoralis_Contig828 60165..60241 +
1680791685.7271144-CDS-P-littoralis_Contig828:61135..612171680791685.7271144-CDS-P-littoralis_Contig828:61135..61217Pylaiella littoralis U1_48CDSP-littoralis_Contig828 61136..61217 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig828.23.1prot_P-littoralis_Contig828.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig828 59772..61217 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig828.23.1

>prot_P-littoralis_Contig828.23.1 ID=prot_P-littoralis_Contig828.23.1|Name=mRNA_P-littoralis_Contig828.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=76bp
MISICPYRWTSTRRSTTLPWAQQNPGACWTKFGTPETEYTKGTQAQFDVG
PQSEDDFESGKTSEDYMMKLLQYMWT
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mRNA from alignment at P-littoralis_Contig828:59754..61217+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig828.23.1 ID=mRNA_P-littoralis_Contig828.23.1|Name=mRNA_P-littoralis_Contig828.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1464bp|location=Sequence derived from alignment at P-littoralis_Contig828:59754..61217+ (Pylaiella littoralis U1_48)
TGGTGAAGGAGGCGGCGCATGATCTCGATTTGCCCCTACCGTTGGACCTC
GACGAGAAGATCAACTACACTACCTTGGGCACAGCAGGTACATAGGATGA
AAGGGTTGGGGTTGTGGCGACAGGGCGTGTGACAGTTTTACCGCGGGAGA
GTGTTGTCCGGGCGCCCGAGCACCTTCCGCTGATGTTGCTCAGTTCACAT
AATAGCGCGGTGATGCCACATATCCTATCTATGTGCTACTGCTGTAGAAT
GAAACATGCGTAAGTTAAACGTGTCGGACTTGTCCTGAAATTGTGAATCG
ATCCCACCATGTTGTTTAAAAAAGTCCTTCGGCGCGTCGATAACCCGTTC
CCCTCTACTATTCCTTTCGTCTATCTGTACACGGGCAAAACCCATACTCA
CTTTCACCCAGAATCCAGGTGCATGCTGGACGAAATTTGGGACTCCCGAG
ACCGAGTACACCAAAGGGACTCAGGCGCAGTTCGATGTGTGAGAACAAGG
CCTTGCGGGTTGTGTGTAATCGTTCTAGACTTTTGAAGTATCCTGAGATT
GCTGTGAAAGTGTGACGTGAGATCAATACAAGAGCTGTTGTGAGATGAGT
ATTACTGCTGTTCCTTTCACGTTCACTCCGGCAGACGTATAGTGGTATCA
AACCTTAGGTGATTTTTACCACGTACACATATGTGCTTTGAACCTTGTAC
ACAACTCTCACAGCCAGCAGCAGTAGTATGCCTCCACCGCAGCACGTTAT
ACACAGGTTCAACAAAGGCAGTAAACGTACTCACAACATCCTAACCTTAT
CCTTGCCCCGTTACAGCGGTAATAGCACGCGACAGCAAGCAGCAGCAGCA
TAGCGGGAGCAGTAGTACAGTACAGCGGTCGAAACAACAAAGGAAAAAGG
ACGACAGAACATCGGTGCACAACGTTTGCACCAAGGCGCTACCGCCGCTG
TAGCTGCGTTTGTAAAGGCGAACTGGCCGTCAGGGTTCTCACGTACCGCA
AGTTGCAACGGCGATAGCTTTGTCTGTGAGCGAGTCGCGGGCTACGGAAA
ATGCCGCATAGCTTAGCAGCAGACTCAGCAGAAGTAACACCGCTCGTACA
CGTTCCCGCAGCCGACAGTTGCACAAGAAATTGCTGCCACAAGCATCACT
ACTGAAGCGCCTGATGTGCTGCTGTATAGTCCTTGAAGAGGAGGTCTTCC
GTGATGGAATATTTGATGCACAGTTCTTGTGCTCAAGGGATCGAAAACCT
GTTCACCCAAAAACATGGGCAGCTCCAACCTCACCCTCTGCACATGTACT
GTAAAAAGTATTTGGCGTTGTTCACTGAAGTTCTCACCATTCATACCCTG
CGTTGTGCACACCCGTGGTTTTGTCGGCGCAGGGGGCCGCAATCTGAGGA
TGACTTCGAATCGGGAAAAACGAGTGAAGATTACATGATGAAGCTTCTCC
AGTACATGTGGACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig828:59754..61217+

>mRNA_P-littoralis_Contig828.23.1 ID=mRNA_P-littoralis_Contig828.23.1|Name=mRNA_P-littoralis_Contig828.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=228bp|location=Sequence derived from alignment at P-littoralis_Contig828:59754..61217+ (Pylaiella littoralis U1_48)
ATGATCTCGATTTGCCCCTACCGTTGGACCTCGACGAGAAGATCAACTAC
ACTACCTTGGGCACAGCAGAATCCAGGTGCATGCTGGACGAAATTTGGGA
CTCCCGAGACCGAGTACACCAAAGGGACTCAGGCGCAGTTCGATGTGGGG
CCGCAATCTGAGGATGACTTCGAATCGGGAAAAACGAGTGAAGATTACAT
GATGAAGCTTCTCCAGTACATGTGGACC
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