mRNA_P-littoralis_Contig826.51.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig826.51.2
Unique NamemRNA_P-littoralis_Contig826.51.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig826.51.2 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 9.240e-79
Identity = 148/346 (42.77%), Postives = 188/346 (54.34%), Query Frame = 1
Query:    7 TFRKNFKRWYYKFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFFQQLRSILLRHAKE------------------------------------ANMDQTPIQAEMPQETTIAKTGAKDARIATGGKEKLRYTVVLSVRGDGEKVKPRIIYEGTPFVSKKTK-KGASTKP------------------------GLGVQKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEASQQKLASKAKTEAVMIPGRLTPVVQPLDRSINKEFKRGMTAKFTHWVKDEFDRNEPGKAVAPSRGVVAMWVKDVWANISVKTILSCFKVCGLTLNLDGSEDH 858
             F+  F  WY +F KR+ FSIRR+TSVGQK P+G EG AWA   +LR  L++ A E                                     NMDQTP+Q E+P ETT+ KTGAKDARI+TGGKEK R+T+VL+V  DG+KV PRII++GTPF       KG ST P                          GVQ+ SW D  + + W++  +  RP   S   Q   IL LDDFKCHKDE     L   A T  + IPGRLTP++QPLDR +NK+ KR +  K+T +          GK   P RGVV+ W K+ W + + +T+ +CF +CGLTL LDGSEDH
Sbjct:   26 AFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGDEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESSTPETVKTCFMICGLTLALDGSEDH 371          
BLAST of mRNA_P-littoralis_Contig826.51.2 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 2.440e-76
Identity = 150/367 (40.87%), Postives = 189/367 (51.50%), Query Frame = 1
Query:   31 WYYKFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFFQQLRSILLRHAKE------------------------------------ANMDQTPIQAEMPQETTIAKTGAKDARIATGGKEKLRYTVVLSVRGDGEKVKPRIIYEGTPFVSKKTK-KGASTKP------------------------GLGVQKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEASQQKLASKAKTEAVMIPGRLTPVVQPLDRSINKEFKRGMTAKFTHWVKDEFDRNEPGKAVAPSRGVVAMWVKDVWANISVKTILS-----------------------------CFKVCGLTLNLDGSEDH 858
            WY +F KR+ FSIRR+TSVGQK P+G+EG AWA   +LR  L+R A E                                     NMDQTP+Q EMP ETT+ KTGAKDARI+TGGKEK R+T+VL+V  DG+KV PRII++GTPF+      KG ST P                          GVQ+ SW D  + + W++  +  RP   S   Q   IL LDDFKCHKDE     L   A T  ++IPG LTP++QPLDR +NK+ KR +  K+T +          GK   P RGVV+ W K+ W +I+ +T+ S                             CFK+CGLTL LDGSEDH
Sbjct:   34 WYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESITPETVSSVRKERFALGDVRAWSGENPACSVXETVKTCFKICGLTLALDGSEDH 400          
BLAST of mRNA_P-littoralis_Contig826.51.2 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 1.160e-73
Identity = 146/346 (42.20%), Postives = 187/346 (54.05%), Query Frame = 1
Query:   10 FRKNFKRWYYKFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFFQQLRSILLRHAKE------------------------------------ANMDQTPIQAEMPQETTIAKTGAKDARIATGG-KEKLRYTVVLSVRGDGEKVKPRIIYEGTPFVSKKTK-KGASTKP------------------------GLGVQKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEASQQKLASKAKTEAVMIPGRLTPVVQPLDRSINKEFKRGMTAKFTHWVKDEFDRNEPGKAVAPSRGVVAMWVKDVWANISVKTILSCFKVCGLTLNLDGSEDH 858
            F+  F  WY +F KR+ FSIRR+TSVGQK P+G+EG AWA   +L   L++ A E                                     NMDQ P+Q EMP ETT+ KTGAKDARI+TGG  EK R+T+VL+V  DG+KV PRII+EGTPF+      KG ST+P                          GVQ+ SW D  + + W++  +  RP   S   Q   IL LDDFKCH DE     L   A T  + IPG LTP++QPLDR +NK+ KR +  K+T +          GK   P RGVV+ W K+ W +I+ +T+ +C K+CGLTL LDGSEDH
Sbjct:  221 FKFKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSPSAVADARSGKLKPPERGVVSTWCKEAWESITPETVKTCSKICGLTLALDGSEDH 566          
BLAST of mRNA_P-littoralis_Contig826.51.2 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 1.330e-73
Identity = 153/373 (41.02%), Postives = 192/373 (51.47%), Query Frame = 1
Query:    7 TFRKNFKRWYYKFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFFQQLRSILLRHAKE------------------------------------ANMDQTPIQAEMPQETTIAKTGAKDARIATG--------------------------GKEKLRYTVVLSVRGDGEKVKPRIIYEGTPFVSKKTK-KGASTKP------------------------GLGVQKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEASQQKLASKAKTEAVMIPGRLTPVVQPLDRSINKEFKRGMTAKFT-HWVKDEFDRNEPGKAVAPSRGVVAMWVKDVWANISVKTILSCFKVCGLTLNLDGSEDH 858
             F+  FK WY +F KR++FSIRR+TSVG + P+G EG AWA   +LR  LL  A E                                     NMDQTP+Q EMP ETT+ KTGAKDARIATG                          GKEK R+T+ L+V  DG KV  RII++GTPFV   T  KG +T+P                          GVQ+ SWCD  +   W+ + +  RP   S   Q   IL LDDFKCHKD+     L  +A T  + IPG LTP++QPLDR +NK+ KR +   +T H  K   D  + GK   P RG VA W K+ WA+I+ +T+ +CFK+CGLTL LDGSEDH
Sbjct:  113 AFKSKFKSWYQRFRKRNKFSIRRRTSVGIRLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDP-KTGKLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDH 484          
BLAST of mRNA_P-littoralis_Contig826.51.2 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 2.590e-71
Identity = 141/354 (39.83%), Postives = 183/354 (51.69%), Query Frame = 1
Query:    7 TFRKNFKRWYYKFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFFQQLRSILLRHAKE------------------------------------ANMDQTPIQAEMPQETTIAKTGAKDARIATGGKEKLRYTVVLSVRGDGEKVKPRIIYEGTPFVSKKTK-KGASTKP------------------------GLGVQKASWCDTTQTDAWLTEEFMRRPGASGFSQPAS---------ILTLDDFKCHKDEASQQKLASKAKTEAVMIPGRLTPVVQPLDRSINKEFKRGMTAKFTHWVKDEFDRNEPGKAVAPSRGVVAMWVKDVWANISVKTILSCFKVCGLTLNLDGSEDH 858
             F+  F  WY +F KR+ FSIRR+ SVGQK P+G+EG AWA   +LR  L++ A E                                     NMDQTP+Q EMP ETT+  TG KDARI+TGGKEK R+T+VL+V  DG+ V P II++GTPF+      KG ST P                          GVQ+ SW    + + W+   +   P      +P +         IL LDDFKCHKDE     L   A T  + IPG LTP++QPLDR +NK+ KR +  K+T +          GK   P RGVV+ W K+ W  ++ +T+ +CFK+CGLTL LDGSEDH
Sbjct:  180 AFKVKFNSWYQRFRKRNGFSIRRRASVGQKLPKGYEGMAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKEKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSAPAVADARSGKLKPPERGVVSTWCKEAWEFVTSETVNTCFKICGLTLALDGSEDH 533          
BLAST of mRNA_P-littoralis_Contig826.51.2 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 1.370e-69
Identity = 145/334 (43.41%), Postives = 182/334 (54.49%), Query Frame = 1
Query:   22 FKRWYYKFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFFQQLRSILLRHAKE------------------------------------ANMDQTPIQAEMPQETTIAKTGAKDARIATGGKEKLRYTVVLSVRGDGEKVKPRIIYEGTPFVSKKTK-KGASTKP------------------------GLGVQKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEASQQKLASKAKTEAVMIPGRLTPVVQPLDRSINKEFKRGMTAKFT-HWVKDEFDRNEPGKAVAPSRGVVAMWVKDVWANISVKTILSCFKVCGLTL 834
            FK WY +F KR++FSIRR+TSVGQK P+G EG AWA   +LR  LL  A E                                     NMDQTP+Q EMP ETT+  TGAKDARIATGGKEK R+T+ L+V  DG+KV  RII++GTPFV   T  KG +T+P                          GVQ+ SWCD  +   W+ + +  RP   S   Q   IL LDDFKCHKD+     L  +A T  + IPG L P+ QPLDR +NK+ KR +   +T H  K   D  + GK V P RG VA W K+ WA+I+ + + +CFK+CGLTL
Sbjct:  185 FKSWYQRFCKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAHTAKAARDP-KTGKLVPPGRGAVATWCKNAWASITPEIVKTCFKICGLTL 517          
BLAST of mRNA_P-littoralis_Contig826.51.2 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 1.440e-69
Identity = 146/359 (40.67%), Postives = 185/359 (51.53%), Query Frame = 1
Query:    7 TFRKNFKRWYYKFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFFQQLRSILLRHAKE------------------------------------ANMDQTPIQAEMPQETTIAKTGAKDARIATGGKEKLRYTVVLSVRGDGEKVKPRIIYEGTPF----VSKKTKKGASTK----------------------------------PGLGVQKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEASQQKLASKAKTEAVMIPGRLTPVVQPLDRSINKEFKRGMTAKFTHWVKDEFDRNEPGKAVAPSRGVVAMWVKDVWANISVKTILSCFKVCGLTLNLDGSEDH 858
             F+  F  WY +F KR+ FSIRR+TSVGQK P+G+EG AWA   +LR  L++ A E                                     NMDQTP+Q EMP ETT+ KTGAKDARI+TGG+EK R+T+VL+V  DG+KV PRII++GTPF    VS K K     K                                  P +   + SW D  + + W+   +  RP   S   Q   IL LDDFKCHKDE     L   AKT  + IPG LT ++QPLDR +NK+ KR +  K+T            GK   P  GVV+ W K+ W +I+ KT+ +CFK+CGLTL LDGSE H
Sbjct:  208 AFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGEEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKVKSTLPRKNSVAWEIHSANXARSGCHGGRQNDVSPRIIFKGTPFIPPTEKSWSDQRECNGWIPGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRGAKT-VIFIPGGLTSLLQPLDRMLNKQMKRLLRGKYTACSASAVADARSGKLNPPEHGVVSTWCKEAWESITSKTVETCFKICGLTLALDGSEHH 565          
BLAST of mRNA_P-littoralis_Contig826.51.2 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 8.230e-69
Identity = 141/345 (40.87%), Postives = 185/345 (53.62%), Query Frame = 1
Query:    7 TFRKNFKRWYYKFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFFQQLRSILLRHAKE------------------------------------ANMDQTPIQAEMPQETTIAKTGAKDARIATGGKEKLRYTVVLSVRGDGEKVKPRIIYEGTPFVSKKT-KKGASTKP------------------------GLGVQKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEASQQKLASKAKTEAVMIPGRLTPVVQPLDRSINKEFKRGMTAKFTHWVKDEFDRNEPGKAVAPSRGVVAMWVKDVWANISVKTILSCFKVCGLTLNLDGSED 855
             FR  FK WY++F +RH  SIRR+TSVGQK P G+EG A+A   +LR+ LL  A E                                     NMDQTP+Q EMP ETT+ K GAKDARI+TGGKEK R+T+ L+V  DG KV  RII++G PF+   T ++G +T+P                          GVQ+ SW D  +   WL+E +  RP   S   Q  SIL LDDF+ +              T  ++IPG LTP++QPLDR ++KE KR M  ++T ++       + GK   P RG+V+ W K+ WA I+ +T+  CFKVCGLTL LDGSED
Sbjct:  199 AFRTKFKNWYHRFRERHGLSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGKEKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIKQRHSILVLDDFRTN--------------TTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQYMASAIADPKTGKLQPPGRGLVSTWCKESWAAITAETVKMCFKVCGLTLALDGSED 529          
BLAST of mRNA_P-littoralis_Contig826.51.2 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 1.420e-62
Identity = 118/253 (46.64%), Postives = 150/253 (59.29%), Query Frame = 1
Query:  178 NMDQTPIQAEMPQETTIAKTGAKDARIATGGKEKLRYTVVLSVRGDGEKVKPRIIYEGTPFVSKKTK-KGASTKP------------------------GLGVQKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEASQQKLASKAKTEAVMIPGRLTPVVQPLDRSINKEFKRGMTAKFTHWVKDEFDRNEPGKAVAPSRGVVAMWVKDVWANISVKTILSCFKVCGLTLNLDGSEDH 858
            NMDQTP+Q EMP ETT+ KTGAKDAR++TGG+EK R+T+VL+V  DG+KV  RII+ GTPF+      KG ST P                          GVQ+ SW D  + + W +  +  RP   S   Q   IL LDDFKCHKDE     L   A T  + IPG LTP++QPLDR +NK+ KR + +K+T +     D    GK   P RGVV+ W K  W +I+ +T+ +CFK+CGLTL LDGSEDH
Sbjct:   53 NMDQTPVQHEMPVETTLEKTGAKDARVSTGGEEKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAYSASATDARS-GKLKPPERGVVSTWCKGAWESITPETVKTCFKICGLTLALDGSEDH 304          
BLAST of mRNA_P-littoralis_Contig826.51.2 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 1.050e-61
Identity = 145/393 (36.90%), Postives = 185/393 (47.07%), Query Frame = 1
Query:    7 TFRKNFKRWYYKFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFFQQLRSILLRHAKE------------------------------------ANMDQTPIQAEMPQETTIAKTGAKDARIATGGKEKLRYTVVLSVRGDGEKVKPRIIYEGTPFVSKKT---KKGASTKPG----------------------LGVQKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEASQQKLASKAKTEAVMIPGRLTPVVQPLDRSINKEFKRGMTAKF------------------------------------------------THWVKDEFDRNEPGKAVAPSRGVVAMWVKDVWANISVKTILSCFKVCGLTLNLDGSED 855
             FR  FK WY+ F +RH FSIRR+TSVGQK P G+EG A+A   +LR+ LL  A E                                     NMDQTP+Q EMP ETT+ K G KDARI+TGGKEK R+T  L+V  DG KV  RII++G PF+   T   +K   T+ G                        VQ+ SWCD  +   WL+E +  RP   S   Q  SIL LDDF+CH+ E+  + L  +  T  ++IPG LTP++QPLDR +NKE KR M                                                    T ++       + GK   P RG+V+   K+ WA I+ +T+  CFKVCGLTL LDGSED
Sbjct:   95 AFRTKFKNWYHCFRERHGFSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGKEKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIKQRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQYMASAIADPKTGKLQPPGRGLVSTRYKESWAAITPETVKMCFKVCGLTLALDGSED 487          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig826.51.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6L9_9PHAE9.240e-7942.77DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE2.440e-7640.87DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE1.160e-7342.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE45_9PHAE1.330e-7341.02DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JTG5_9PHAE2.590e-7139.83DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE1.370e-6943.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRZ8_9PHAE1.440e-6940.67DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5JQM5_9PHAE8.230e-6940.87DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE1.420e-6246.64DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K583_9PHAE1.050e-6136.90Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig826contigP-littoralis_Contig826:78416..80374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7668.SPU_015022-tr
Preferred namePOGK
PFAMsBrkDBD,DDE_1,HTH_Tnp_Tc5,KRAB
Model size966
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons5
Evalue9.51e-43
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota,38I47@33154|Opisthokonta,3BMCH@33208|Metazoa,3CYY1@33213|Bilateria
Descriptionpogo transposable element with KRAB domain
Cds size966
COG categoryBD
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791683.663034-CDS-P-littoralis_Contig826:78415..785921680791683.663034-CDS-P-littoralis_Contig826:78415..78592Pylaiella littoralis U1_48CDSP-littoralis_Contig826 78416..78592 +
1680791683.6780682-CDS-P-littoralis_Contig826:78733..788241680791683.6780682-CDS-P-littoralis_Contig826:78733..78824Pylaiella littoralis U1_48CDSP-littoralis_Contig826 78734..78824 +
1680791683.6931689-CDS-P-littoralis_Contig826:79409..795411680791683.6931689-CDS-P-littoralis_Contig826:79409..79541Pylaiella littoralis U1_48CDSP-littoralis_Contig826 79410..79541 +
1680791683.7165315-CDS-P-littoralis_Contig826:79613..800731680791683.7165315-CDS-P-littoralis_Contig826:79613..80073Pylaiella littoralis U1_48CDSP-littoralis_Contig826 79614..80073 +
1680791683.7302005-CDS-P-littoralis_Contig826:80268..803741680791683.7302005-CDS-P-littoralis_Contig826:80268..80374Pylaiella littoralis U1_48CDSP-littoralis_Contig826 80269..80374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig826.51.2prot_P-littoralis_Contig826.51.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig826 78416..80374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig826.51.2

>prot_P-littoralis_Contig826.51.2 ID=prot_P-littoralis_Contig826.51.2|Name=mRNA_P-littoralis_Contig826.51.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=322bp
METFRKNFKRWYYKFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFFQQLRS
ILLRHAKEANMDQTPIQAEMPQETTIAKTGAKDARIATGGKEKLRYTVVL
SVRGDGEKVKPRIIYEGTPFVSKKTKKGASTKPGLGVQKASWCDTTQTDA
WLTEEFMRRPGASGFSQPASILTLDDFKCHKDEASQQKLASKAKTEAVMI
PGRLTPVVQPLDRSINKEFKRGMTAKFTHWVKDEFDRNEPGKAVAPSRGV
VAMWVKDVWANISVKTILSCFKVCGLTLNLDGSEDHDEFDDSDDDCCAVD
LVDLVDSDSEEEEEEEEEAES*
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mRNA from alignment at P-littoralis_Contig826:78416..80374+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig826.51.2 ID=mRNA_P-littoralis_Contig826.51.2|Name=mRNA_P-littoralis_Contig826.51.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1959bp|location=Sequence derived from alignment at P-littoralis_Contig826:78416..80374+ (Pylaiella littoralis U1_48)
ATGGAAACCTTCCGGAAGAACTTCAAGAGGTGGTACTACAAGTTCCTCAA GAGGCACAGGTTCTCGATCCGTCGCAAGACAAGTGTCGGGCAGAAGAAGC CGGAGGGTTGGGAGGGGAAGGCATGGGCCTTCTTCCAGCAGCTGCGCTCG ATACTGCTTCGCCATGCCAAGGAAGCCGTTGCCGCGAACAGGACAGCGGC AAAGGCGGCAGCGGCAACGGCGGGAGAGACGGTCGAGATCGAGATCGAAG AGACCCCAGTGGCGGTGACTGCGCAGGAACTTTTGAGCGTGCAGGAGGAC GTCTTCAAGCTGCCCTAGAACATGGACCAGACACCCATCCAAGCAGAGAT GCCGCAAGAGACCACGATCGCCAAGACTGGTGCGAAGGACGCTCGCATCG CGACAGGAGGTAAGATCTTGCTTGTGCGTCAATTCAGATATCAACGATGA CTCTAAAACCCTCTCGGGACGAAAGTTCTCACTTTGCCAAAAAATCGGAA AATTGAAGTGTGGCGACTTGCCAAAAATTCAGAATATAGAAATGCGGCGA CTTTTGTTTGAATTTTTTTTTTTTTTTTTGCCGTCACCTCTCTCTCTTTC TCTCTCTCTCTCTCTCTCTCCCCCTCTCTTCCTCGCTCTCTGGAGCAATG TCGTTCCTTCTTCGTTCCTTCATCGTGATATGATGTACCCACGTTGTTGA CAGTAACGGTCGCAATGCATAATAGGTAAAATATTCAATACATGACACCA CCGTCTTGCCTGCGTCTTGCCGTCTGTGCATGTTTATTATTTTTATTATG TGTTGTTCAATTATGCATATTGTTTTACAATTAATAATATGAATGTACGA GTACTCTGTTCACCTTTTTGGCGCTGACTGTGTTGGTTGTACCGTCTTTG TTTTAAATACACAACCTTTTGTCCAAAAACCGTATGTTGCTCACTTGCCT TCATCGTCCCCTCTCCTCAATCTGCTGTAATTTATTATGATCAGGGAAGG AGAAGCTGAGGTACACCGTGGTGTTATCTGTGCGTGGTGACGGGGAGAAG GTGAAGCCTCGCATCATCTACGAGGGCACCCCGTTCGTCTCCAAGAAGAC CAAGAAGGGTGCGTCGACCAAGCCAGGTAAGGACACTCTGACGTACCAGC ACATACCGGCCAACCGAACGCAGTTCGACTACCCGGCGGGCGGCGTAGGC CTCGGGGTGCAGAAGGCTTCATGGTGCGACACGACCCAGACCGACGCGTG GCTAACGGAGGAGTTCATGCGCCGCCCCGGCGCCAGCGGCTTCTCTCAGC CGGCCAGCATTCTCACGCTGGACGACTTCAAGTGCCACAAGGACGAAGCC TCCCAGCAGAAGCTGGCAAGCAAGGCCAAGACGGAGGCGGTGATGATTCC TGGCCGGCTGACGCCGGTGGTCCAGCCGCTCGACCGCAGCATCAACAAGG AGTTCAAGCGTGGGATGACGGCCAAGTTCACCCACTGGGTGAAGGACGAG TTCGACCGTAATGAGCCTGGCAAGGCAGTGGCGCCGAGCAGGGGGGTGGT GGCGATGTGGGTGAAGGATGTGTGGGCGAACATCTCGGTGAAGACGATCC TGTCGTGCTTCAAGGTGTGCGGCCTCACCCTCAACCTGGACGGCAGCGAG GACCACGAGTGGTGCATCCACACCTTCGGCGAGGGGTACCGCGAGGTCCT TGTCGAGCAGCGGGTGGTGTGGGAGCAAGCGCACGGCAAGGAACTGGAGC CTCTTCAGCTGCCGGTCGTTCCCGAGGGTGGTGGAGGAGGGGCAGCGGGC GTGGTCACGGTCACGGCAGCAGTAGAGGAGGTCCAAGCTTCCCTGGCACC CAGCGAGTTCGACGACTCAGACGACGACTGCTGCGCAGTCGACCTAGTCG ACCTCGTCGACTCGGACTCGGAGGAAGAAGAAGAGGAGGAGGAGGAGGCG GAGTCGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig826:78416..80374+

>mRNA_P-littoralis_Contig826.51.2 ID=mRNA_P-littoralis_Contig826.51.2|Name=mRNA_P-littoralis_Contig826.51.2|organism=Pylaiella littoralis U1_48|type=CDS|length=966bp|location=Sequence derived from alignment at P-littoralis_Contig826:78416..80374+ (Pylaiella littoralis U1_48)
ATGGAAACCTTCCGGAAGAACTTCAAGAGGTGGTACTACAAGTTCCTCAA
GAGGCACAGGTTCTCGATCCGTCGCAAGACAAGTGTCGGGCAGAAGAAGC
CGGAGGGTTGGGAGGGGAAGGCATGGGCCTTCTTCCAGCAGCTGCGCTCG
ATACTGCTTCGCCATGCCAAGGAAGCCAACATGGACCAGACACCCATCCA
AGCAGAGATGCCGCAAGAGACCACGATCGCCAAGACTGGTGCGAAGGACG
CTCGCATCGCGACAGGAGGGAAGGAGAAGCTGAGGTACACCGTGGTGTTA
TCTGTGCGTGGTGACGGGGAGAAGGTGAAGCCTCGCATCATCTACGAGGG
CACCCCGTTCGTCTCCAAGAAGACCAAGAAGGGTGCGTCGACCAAGCCAG
GCCTCGGGGTGCAGAAGGCTTCATGGTGCGACACGACCCAGACCGACGCG
TGGCTAACGGAGGAGTTCATGCGCCGCCCCGGCGCCAGCGGCTTCTCTCA
GCCGGCCAGCATTCTCACGCTGGACGACTTCAAGTGCCACAAGGACGAAG
CCTCCCAGCAGAAGCTGGCAAGCAAGGCCAAGACGGAGGCGGTGATGATT
CCTGGCCGGCTGACGCCGGTGGTCCAGCCGCTCGACCGCAGCATCAACAA
GGAGTTCAAGCGTGGGATGACGGCCAAGTTCACCCACTGGGTGAAGGACG
AGTTCGACCGTAATGAGCCTGGCAAGGCAGTGGCGCCGAGCAGGGGGGTG
GTGGCGATGTGGGTGAAGGATGTGTGGGCGAACATCTCGGTGAAGACGAT
CCTGTCGTGCTTCAAGGTGTGCGGCCTCACCCTCAACCTGGACGGCAGCG
AGGACCACGACGAGTTCGACGACTCAGACGACGACTGCTGCGCAGTCGAC
CTAGTCGACCTCGTCGACTCGGACTCGGAGGAAGAAGAAGAGGAGGAGGA
GGAGGCGGAGTCGTAG
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