mRNA_P-littoralis_Contig824.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig824.25.1
Unique NamemRNA_P-littoralis_Contig824.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig824.25.1 vs. uniprot
Match: A0A6H5JNV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV8_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.180e-33
Identity = 64/119 (53.78%), Postives = 86/119 (72.27%), Query Frame = 1
Query:    1 LITAGCNESVEATLRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMREDLEAFDIVVDKKEG-WEASAKRADEWYDRVDEGARRFTDEWLKKEGDLSETRRRKRE 354
            LI AGC E++EAT+RKRRLCFAGFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  +K+ G W+ SAK ++ WY++V++GA  F  +W ++E + S  R+R RE
Sbjct:   55 LIKAGCEETIEATVRKRRLCFAGFVLRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRARE 173          
BLAST of mRNA_P-littoralis_Contig824.25.1 vs. uniprot
Match: A0A6H5JX67_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX67_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 7.510e-32
Identity = 61/114 (53.51%), Postives = 80/114 (70.18%), Query Frame = 1
Query:    1 LITAGCNESVEATLRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMREDLEAFDIVVDKKEG-WEASAKRADEWYDRVDEGARRFTDEWLKKEGDLSETR 339
            LI AGC E++EAT+RKRRLCFAGFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ E L AF++  DK+ G W+ SAK  + WY++V++GA  F  +W ++E + S  R
Sbjct:   44 LIQAGCEETIEATVRKRRLCFAGFVTRMEDNRLPKRMLLGAMAGGVGYRGGQERDWVSRLGEGLVAFNMGDDKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKR 157          
BLAST of mRNA_P-littoralis_Contig824.25.1 vs. uniprot
Match: A0A6H5L2Q0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q0_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.240e-31
Identity = 60/115 (52.17%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    4 ITAGCNESVEATLRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMREDLEAFDIVVDKKEG-WEASAKRADEWYDRVDEGARRFTDEWLKKEGDLSETRRR 345
            + AGC E++EAT+RKRRLCFAGFV RM+D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  +K+ G W+ SAK  + WY++V++GA  F  +W ++E + S  R+R
Sbjct:   72 LMAGCEETIEATVRKRRLCFAGFVMRMKDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKRQR 186          
BLAST of mRNA_P-littoralis_Contig824.25.1 vs. uniprot
Match: A0A6H5KGF6_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF6_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 3.170e-31
Identity = 63/122 (51.64%), Postives = 85/122 (69.67%), Query Frame = 1
Query:    1 LITAGCNESVEATLRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMREDLEAFDIVVDKKEG-WEASAKRADEWYDRVDEGARRFTDEWLKKEGDLSETRRRKRERDA 363
            LI AGC E++EAT+RKRRLCFAGFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  +K+ G W+ SAK  + WY++V++ A  F  +W ++E + S   +R RE +A
Sbjct:   71 LIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKHMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDVATWFMRKWHRQEAETSAKHQRAREAEA 192          
BLAST of mRNA_P-littoralis_Contig824.25.1 vs. uniprot
Match: A0A6H5LD24_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD24_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 6.880e-31
Identity = 63/118 (53.39%), Postives = 83/118 (70.34%), Query Frame = 1
Query:    1 LITAGCNESVEATLRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMREDLEAFDIVVDKKEG-WEASAKRADEWYDRVDEGARRFTDEWLKKEGDLSETRRRKR 351
            LI AGC E++EAT+RKRRLCFAGFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF +  +K+ G W+ SAK  + WYD++++GA  F  +W ++E + S  R+R R
Sbjct:  365 LIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAEASAKRQRAR 482          
BLAST of mRNA_P-littoralis_Contig824.25.1 vs. uniprot
Match: A0A6H5JYX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX0_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 7.870e-31
Identity = 63/123 (51.22%), Postives = 86/123 (69.92%), Query Frame = 1
Query:    1 LITAGCNESVEATLRKRRLCFAGFVA-RMRDERLPKIALLGELQGGARYLGGQEFDWLRRMREDLEAFDIVVDKKEG-WEASAKRADEWYDRVDEGARRFTDEWLKKEGDLSETRRRKRERDA 363
            LI AGC E++EAT+RKRRLCFAGFV  RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  +K+ G W+ SAK  + WY+++++GA     +W ++E + S  R+R RE +A
Sbjct:   69 LIQAGCEETIEATVRKRRLCFAGFVVVRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKGPEVWYNKIEDGAAWLMRKWHRQEAEASAKRQRARETEA 191          
BLAST of mRNA_P-littoralis_Contig824.25.1 vs. uniprot
Match: A0A6H5K1C5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1C5_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.040e-30
Identity = 59/112 (52.68%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    1 LITAGCNESVEATLRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMREDLEAFDIVVDKKEG-WEASAKRADEWYDRVDEGARRFTDEWLKKEGDLSE 333
            LI AGC E++EAT+RKRRLCFAGFV RM D RLP   LLG + GG  Y GGQE DW+ R+ EDL AF++  +K+ G W+ SAK ++ WY++V++GA  F  +W ++E + +E
Sbjct:  156 LIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPTRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEATE 267          
BLAST of mRNA_P-littoralis_Contig824.25.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.300e-30
Identity = 64/122 (52.46%), Postives = 87/122 (71.31%), Query Frame = 1
Query:    1 LITAGCNESVEATLRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMREDLEAFDIVVDKKEG-WEASAKRADEWYDRVDEGARRFTDEWLKKEGDLSETRRRKRERDA 363
            LI AGC E++EAT+RKRRLCFAGFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  +K+ G W+ SAK  + WY++V++GA  F  +W ++E + S  R+R +E +A
Sbjct:  689 LIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMSDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAKEAEA 810          
BLAST of mRNA_P-littoralis_Contig824.25.1 vs. uniprot
Match: A0A6H5KSH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH7_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.490e-30
Identity = 59/109 (54.13%), Postives = 78/109 (71.56%), Query Frame = 1
Query:    1 LITAGCNESVEATLRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMREDLEAFDIVVDKKEG-WEASAKRADEWYDRVDEGARRFTDEWLKKEGD 324
            LI AGC E++EAT+RKRRLCFAGFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF +  +K+ G W+ SAK  + WYD++++GA  F  +W ++E +
Sbjct:  156 LIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAE 264          
BLAST of mRNA_P-littoralis_Contig824.25.1 vs. uniprot
Match: A0A6H5KU62_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU62_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.760e-30
Identity = 62/119 (52.10%), Postives = 85/119 (71.43%), Query Frame = 1
Query:    1 LITAGCNESVEATLRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLGGQEFDWLRRMREDLEAFDIVVDKKEG-WEASAKRADEWYDRVDEGARRFTDEWLKKEGDLSETRRRKRE 354
            LI AGC E++EAT+R+RRLCF GFV RM D RLPK  LLG + GG  Y GGQE DW+ R+ EDL AF++  +K+ G W+ SAK ++ WY++V++GA  F  +W ++E + S  R+R RE
Sbjct:  322 LIQAGCEETIEATVRQRRLCFGGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRARE 440          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig824.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNV8_9PHAE1.180e-3353.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX67_9PHAE7.510e-3253.51Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L2Q0_9PHAE2.240e-3152.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGF6_9PHAE3.170e-3151.64Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LD24_9PHAE6.880e-3153.39Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JYX0_9PHAE7.870e-3151.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1C5_9PHAE1.040e-3052.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGX2_9PHAE1.300e-3052.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSH7_9PHAE1.490e-3054.13Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU62_9PHAE1.760e-3052.10Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig824contigP-littoralis_Contig824:101871..102251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog28377.ENSACAP00000022069
Model size381
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.35e-07
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria,48EZY@7711|Chordata,49BMJ@7742|Vertebrata
DescriptionRibonuclease H protein
Cds size381
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791681.6719332-CDS-P-littoralis_Contig824:101870..1022511680791681.6719332-CDS-P-littoralis_Contig824:101870..102251Pylaiella littoralis U1_48CDSP-littoralis_Contig824 101871..102251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig824.25.1prot_P-littoralis_Contig824.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig824 101871..102251 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig824.25.1

>prot_P-littoralis_Contig824.25.1 ID=prot_P-littoralis_Contig824.25.1|Name=mRNA_P-littoralis_Contig824.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=127bp
LITAGCNESVEATLRKRRLCFAGFVARMRDERLPKIALLGELQGGARYLG
GQEFDWLRRMREDLEAFDIVVDKKEGWEASAKRADEWYDRVDEGARRFTD
EWLKKEGDLSETRRRKRERDAAERQAL
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mRNA from alignment at P-littoralis_Contig824:101871..102251-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig824.25.1 ID=mRNA_P-littoralis_Contig824.25.1|Name=mRNA_P-littoralis_Contig824.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig824:101871..102251- (Pylaiella littoralis U1_48)
CTGATCACCGCGGGTTGCAACGAGAGCGTTGAGGCCACACTGCGCAAGCG GCGACTGTGCTTCGCAGGATTCGTTGCGCGCATGAGAGACGAGAGACTCC CGAAAATTGCTCTCTTGGGAGAATTGCAGGGGGGAGCAAGGTATCTGGGG GGGCAAGAGTTTGACTGGCTGAGGCGAATGCGGGAGGACCTCGAAGCGTT CGACATCGTGGTCGACAAAAAGGAGGGGTGGGAGGCAAGTGCCAAGAGAG CTGACGAGTGGTACGACAGGGTCGACGAGGGTGCGCGGCGGTTCACGGAC GAGTGGCTCAAGAAAGAGGGAGACCTATCAGAGACACGTCGACGGAAAAG AGAGAGGGACGCGGCTGAGAGGCAGGCCTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig824:101871..102251-

>mRNA_P-littoralis_Contig824.25.1 ID=mRNA_P-littoralis_Contig824.25.1|Name=mRNA_P-littoralis_Contig824.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig824:101871..102251- (Pylaiella littoralis U1_48)
CTGATCACCGCGGGTTGCAACGAGAGCGTTGAGGCCACACTGCGCAAGCG
GCGACTGTGCTTCGCAGGATTCGTTGCGCGCATGAGAGACGAGAGACTCC
CGAAAATTGCTCTCTTGGGAGAATTGCAGGGGGGAGCAAGGTATCTGGGG
GGGCAAGAGTTTGACTGGCTGAGGCGAATGCGGGAGGACCTCGAAGCGTT
CGACATCGTGGTCGACAAAAAGGAGGGGTGGGAGGCAAGTGCCAAGAGAG
CTGACGAGTGGTACGACAGGGTCGACGAGGGTGCGCGGCGGTTCACGGAC
GAGTGGCTCAAGAAAGAGGGAGACCTATCAGAGACACGTCGACGGAAAAG
AGAGAGGGACGCGGCTGAGAGGCAGGCCTTG
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