mRNA_P-littoralis_Contig818.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig818.20.1
Unique NamemRNA_P-littoralis_Contig818.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Match: A0A6H5JYA8_9PHAE (Sm domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYA8_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.250e-47
Identity = 77/82 (93.90%), Postives = 78/82 (95.12%), Query Frame = 2 
Query:  257 PAQTGGGKRSPSDFLKTVLGRSVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRRR 502
            PAQTGGGKRSPSDFLKTVLGR VVVKLNSGIDYRGVL CLDGYMNIAMEQTEEYVNGQLKA +GDCFIRGNNVLYIS QRRR
Sbjct:   64 PAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTEEYVNGQLKATFGDCFIRGNNVLYISTQRRR 145
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BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Match: A0A7S2ATC3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ATC3_9STRA)

HSP 1 Score: 145 bits (367), Expect = 6.500e-42
Identity = 70/75 (93.33%), Postives = 70/75 (93.33%), Query Frame = 2 
Query:  278 KRSPSDFLKTVLGRSVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRRR 502
            K  PSDFLKTVLGR VVVKLNSG DYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISA RRR
Sbjct:   33 KCQPSDFLKTVLGRPVVVKLNSGTDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISASRRR 107
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BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Match: A0A836CMP0_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMP0_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.440e-41
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 2 
Query:  281 RSPSDFLKTVLGRSVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRRR 502
            +SPSDFLK VLGRSV+VKLNSG+DYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYIS  +RR
Sbjct:   44 KSPSDFLKGVLGRSVIVKLNSGVDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISTTKRR 117
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BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Match: A0A7S2UQ42_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQ42_9STRA)

HSP 1 Score: 142 bits (359), Expect = 8.830e-41
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 2 
Query:  278 KRSPSDFLKTVLGRSVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRRR 502
            KRSPSDFLK+VLGR V V+LNSG DYRGVLACLDGYMNIAMEQTEEYV+GQLKAKYGDCFIRGNNVLYIS Q+RR
Sbjct:   28 KRSPSDFLKSVLGRPVSVRLNSGTDYRGVLACLDGYMNIAMEQTEEYVDGQLKAKYGDCFIRGNNVLYISTQKRR 102
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BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Match: A0A7S2IZG2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IZG2_9EUKA)

HSP 1 Score: 142 bits (357), Expect = 1.940e-40
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 2 
Query:  278 KRSPSDFLKTVLGRSVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRRR 502
            K +PSDFLKTVLGR VVVKLNSG+DYRGVLACLDGYMNIAMEQTEEYV+GQLKAKYGD FIRGNNVLYIS Q+RR
Sbjct:   30 KSNPSDFLKTVLGRPVVVKLNSGVDYRGVLACLDGYMNIAMEQTEEYVDGQLKAKYGDTFIRGNNVLYISTQKRR 104
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BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Match: A0A7S0KWV0_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KWV0_9STRA)

HSP 1 Score: 141 bits (356), Expect = 5.400e-40
Identity = 66/75 (88.00%), Postives = 72/75 (96.00%), Query Frame = 2 
Query:  278 KRSPSDFLKTVLGRSVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRRR 502
            KRSPSDFLK+VLGR V V+LNSG +YRGVLACLDGYMNIAMEQTEEYV+GQLKAKYGDCFIRGNNVLYISAQ+R+
Sbjct:   53 KRSPSDFLKSVLGRPVKVRLNSGTEYRGVLACLDGYMNIAMEQTEEYVDGQLKAKYGDCFIRGNNVLYISAQKRK 127
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BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Match: A0A7R9YDM9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDM9_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.640e-39
Identity = 65/80 (81.25%), Postives = 74/80 (92.50%), Query Frame = 2 
Query:  260 AQTGGGKRSPSDFLKTVLGRSVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRR 499
            A+T   K +PSDFL++VLGR VVVKLNS ++YRG+LACLDG+MNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQ+R
Sbjct:   20 AKTDVQKSNPSDFLRSVLGRPVVVKLNSTVEYRGILACLDGFMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQKR 99
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BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Match: V4A3S6_LOTGI (Sm domain-containing protein n=19 Tax=Protostomia TaxID=33317 RepID=V4A3S6_LOTGI)

HSP 1 Score: 138 bits (347), Expect = 2.930e-39
Identity = 63/75 (84.00%), Postives = 70/75 (93.33%), Query Frame = 2 
Query:  278 KRSPSDFLKTVLGRSVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRRR 502
            K++PSDFLK ++GR VVVKLNSG+DYRGVLACLDGYMNIA+EQTEEYVNGQLK KYGD FIRGNNVLYIS Q+RR
Sbjct:    4 KQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR 78
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BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Match: LSM6_HUMAN (U6 snRNA-associated Sm-like protein LSm6 n=406 Tax=Sarcopterygii TaxID=8287 RepID=LSM6_HUMAN)

HSP 1 Score: 138 bits (347), Expect = 3.020e-39
Identity = 63/75 (84.00%), Postives = 70/75 (93.33%), Query Frame = 2 
Query:  278 KRSPSDFLKTVLGRSVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRRR 502
            K++PSDFLK ++GR VVVKLNSG+DYRGVLACLDGYMNIA+EQTEEYVNGQLK KYGD FIRGNNVLYIS Q+RR
Sbjct:    5 KQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR 79
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BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Match: K4FT18_CALMI (U6 snRNA-associated Sm-like protein LSm6 n=12 Tax=Vertebrata TaxID=7742 RepID=K4FT18_CALMI)

HSP 1 Score: 138 bits (347), Expect = 3.020e-39
Identity = 63/75 (84.00%), Postives = 70/75 (93.33%), Query Frame = 2 
Query:  278 KRSPSDFLKTVLGRSVVVKLNSGIDYRGVLACLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRRR 502
            K++PSDFLK ++GR VVVKLNSG+DYRGVLACLDGYMNIA+EQTEEYVNGQLK KYGD FIRGNNVLYIS Q+RR
Sbjct:    5 KQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR 79
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig818.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYA8_9PHAE1.250e-4793.90Sm domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S2ATC3_9STRA6.500e-4293.33Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A836CMP0_9STRA2.440e-4190.54Sm domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7S2UQ42_9STRA8.830e-4189.33Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2IZG2_9EUKA1.940e-4089.33Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S0KWV0_9STRA5.400e-4088.00Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A7R9YDM9_9STRA2.640e-3981.25Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
V4A3S6_LOTGI2.930e-3984.00Sm domain-containing protein n=19 Tax=Protostomia ... [more]
LSM6_HUMAN3.020e-3984.00U6 snRNA-associated Sm-like protein LSm6 n=406 Tax... [more]
K4FT18_CALMI3.020e-3984.00U6 snRNA-associated Sm-like protein LSm6 n=12 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig818contigP-littoralis_Contig818:71815..74129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog10029.XP_007630704.1
Preferred nameLSM6
PFAMsLSM
Model size583
Max annot lvl33208|Metazoa
KEGG koko:K12625
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005688,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0022613,GO:0030490,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0035770,GO:0036464,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0046700,GO:0046982,GO:0046983,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1990904
Exons3
Evalue1.76e-40
EggNOG OGsCOG1958@1|root,KOG1783@2759|Eukaryota,3A5NM@33154|Opisthokonta,3BSKH@33208|Metazoa,3D8AQ@33213|Bilateria,48F8H@7711|Chordata,49C6R@7742|Vertebrata,3JHAH@40674|Mammalia,35QT9@314146|Euarchontoglires,4Q5TD@9989|Rodentia
Ec32 ortholog descriptionSm-like protein LSm6
Ec32 orthologEc-19_000790.1
DescriptionLSM domain
Cds size435
COG categoryA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791670.7725043-UTR-P-littoralis_Contig818:71814..718921680791670.7725043-UTR-P-littoralis_Contig818:71814..71892Pylaiella littoralis U1_48UTRP-littoralis_Contig818 71815..71892 -
1680791670.8277626-UTR-P-littoralis_Contig818:74059..741291680791670.8277626-UTR-P-littoralis_Contig818:74059..74129Pylaiella littoralis U1_48UTRP-littoralis_Contig818 74060..74129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791670.7876062-CDS-P-littoralis_Contig818:71892..719241680791670.7876062-CDS-P-littoralis_Contig818:71892..71924Pylaiella littoralis U1_48CDSP-littoralis_Contig818 71893..71924 -
1680791670.7978346-CDS-P-littoralis_Contig818:72517..726311680791670.7978346-CDS-P-littoralis_Contig818:72517..72631Pylaiella littoralis U1_48CDSP-littoralis_Contig818 72518..72631 -
1680791670.809823-CDS-P-littoralis_Contig818:73770..740591680791670.809823-CDS-P-littoralis_Contig818:73770..74059Pylaiella littoralis U1_48CDSP-littoralis_Contig818 73771..74059 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig818.20.1prot_P-littoralis_Contig818.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig818 71893..74059 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig818.20.1

>prot_P-littoralis_Contig818.20.1 ID=prot_P-littoralis_Contig818.20.1|Name=mRNA_P-littoralis_Contig818.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=145bp
MEDSTTPPPPPPPKETEDAVDEKENGEAEEEEEEEDAPMPPAPAAPPAAA
PAATVAAVAVAAPAQTGGGKRSPSDFLKTVLGRSVVVKLNSGIDYRGVLA
CLDGYMNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQRRR*
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mRNA from alignment at P-littoralis_Contig818:71815..74129-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig818.20.1 ID=mRNA_P-littoralis_Contig818.20.1|Name=mRNA_P-littoralis_Contig818.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2315bp|location=Sequence derived from alignment at P-littoralis_Contig818:71815..74129- (Pylaiella littoralis U1_48)
GGGGAGAGGAGAGCTGGTAGAGAGCAAGAACAACACCTCTCTCATTGCCT
CCAAGCACACCACGCACACCATGGAAGACTCAACGACACCACCACCGCCA
CCGCCACCCAAGGAGACGGAAGATGCTGTCGATGAGAAAGAGAACGGCGA
GGCGGAGGAGGAAGAGGAGGAGGAGGATGCACCCATGCCACCTGCGCCGG
CGGCTCCGCCTGCTGCTGCACCTGCTGCCACCGTAGCAGCTGTAGCTGTT
GCTGCGCCCGCACAAACCGGGGGAGGGAAGAGATCGCCAAGTGACTTTCT
GAAGACTGTGCTTGGGAGATCCGTAGTGGTGAAGCTCAATTCCGGGATCG
ATTACAGGGGTGAGAGATGATAAAATACGCACAGCAGTACAGATACCACG
GAAATGAATCACATCTATCTCCTGTCCCACGTATCAAAAGTTGGTGCCTG
CACCATCCCCAGAAAGGAGTGTTCCCTGTTAGCTCTGCTATGCGCTGCGT
TGGTTGCAAGCTCGCTTTGGGCTGCTTCCTAGCTCGAGGTGAGGGAGACA
AGTCAGAGAGCGCGGGCCCGTCTTTTTCCAGCACGGAGCTTGTTACTTCA
TGGATTTTGAAAGCTCGCCCCCCGCTCTCTCTCTTTTTCAGTGTGTGTCA
GATTTCCCCGCCGTCTCAAGTTTTTGTGTTGCATCATCTCATTTTGGAAG
CATCCATGCAGCAACCAGACTGAGGGAACGAAAGCCATGTTGCCATGATC
GGCACTGCTGCTGTGCAGTTGATCTTCCTGTGTATGTTGAGCAAACAGCG
CCAACGATATGCATGACAACAATACCCCTCCCTACTGCTGTAGGCCTTCG
TATACACACCAGGGACCAGGCACCTCGTACTGTTGTGTGATACCATACCC
CCCAGACTGGTTTCCAAGTCAACCTCCAGGAATGAACAGAGGCGTTGGAA
ACCACCTACTTGTACAGCAGTATTGGATGCATCGAAACGTTTCGTCGAGT
GCGTACAAGTATAATAACGATATATCTCTGTATTCTGCTGGATGGCAGCA
GTGTAATACGTAACGCCAACGCCGTGGAAGGATTTGAAGCACAATACGAT
AGATGACCGGCTTCCCTCAAATATTCCCTCAAATAAATTCATACTCCGAG
TACGAAGTATATGCGAGTGACATCGGCCTGCTTCTGCGCCCAGCAGTTCA
TGAACTGAAGGAAAACTCGACACCCCGAAGATCGTGTACGATGAGTGCCG
AGTAGATCGAAACGCCTCATCAACAAGTGCGACCACGCAAAGTGCAATGT
GGTCACCCAACGGTGGGTTTTACCGAGAGGTGGATGGCCCGTTTGCACGG
TCTCACATCTTCATGGGCTTGTTGGTGCGGGCAGATCAATGCGTGAGAGC
TTTGCATGAGAGAGGCAGCGTACCATTATTAAATCAATCTCAACCAATTC
TGTATTTTCCCCCGCCGTTGAACCCGGCCACTTTCACTTTCTCCGAAGGT
GTGTTGGCATGTTTAGACGGGTACATGAACATCGCGATGGAGCAGACGGA
GGAGTACGTGAACGGCCAGCTCAAGGCGAAATATGGGGACTGCTTCATCC
GAGGGAATAACGGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACACA
AAGAGAGAGCAGGCCAGAAGCAAACGGTCGCAGATATGTGCCTCGTTATT
CAATACAATGTGTCATCTCTCTGGAATCCAGCATCAATGCGGTGAACAGA
CCTGTGAAACGCTCGGCAACAGCCGTCTTGCCCGGCAGAGGCTCAGGGGT
TTCCATTGCAATAAAAGGAGAACTGTTGTGTCCGTGTCGTGTGCAGCACA
GCAGCCCTTCGTTCTGACAGGCGCCCGTAGGTTCTTTAGCAATATCCCTC
GATGTTTCCACTTTTTTGGTACCGTACAATGATTGCAAGAAGAAACGGAC
CCAGATAATGCATTGTCAAGATTGAGTCAAGCTTCTCCGGCCTTGCCCCT
GCTCCCAAGCACTGCTCAGTCGCGGGAAATGGCGAAGTCCAAGGAAAAAA
AGTGTGCGTTTTCCGCATCCCCTTTCCTCGAAAGCCGCTGTAGATATAGT
TGGAAATTCCGAAATTCCAAGATAAAGCATTATCGCCTTGACTTTCCATT
CCCCCCCCCCTTCCTTCCTTCCTTCCTCCCTCCGTGTGCCTTTCACCATC
TGCAGTTCTGTACATCAGCGCACAGCGGCGAAGGTGACGAGACGCGACGA
TAGGAGACGGAAAATCAAACGATATATATGGAGGCGTTTGCATCTTTAAT
TTTCCTTCATGGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig818:71815..74129-

>mRNA_P-littoralis_Contig818.20.1 ID=mRNA_P-littoralis_Contig818.20.1|Name=mRNA_P-littoralis_Contig818.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=435bp|location=Sequence derived from alignment at P-littoralis_Contig818:71815..74129- (Pylaiella littoralis U1_48)
ATGGAAGACTCAACGACACCACCACCGCCACCGCCACCCAAGGAGACGGA
AGATGCTGTCGATGAGAAAGAGAACGGCGAGGCGGAGGAGGAAGAGGAGG
AGGAGGATGCACCCATGCCACCTGCGCCGGCGGCTCCGCCTGCTGCTGCA
CCTGCTGCCACCGTAGCAGCTGTAGCTGTTGCTGCGCCCGCACAAACCGG
GGGAGGGAAGAGATCGCCAAGTGACTTTCTGAAGACTGTGCTTGGGAGAT
CCGTAGTGGTGAAGCTCAATTCCGGGATCGATTACAGGGGTGTGTTGGCA
TGTTTAGACGGGTACATGAACATCGCGATGGAGCAGACGGAGGAGTACGT
GAACGGCCAGCTCAAGGCGAAATATGGGGACTGCTTCATCCGAGGGAATA
ACGTTCTGTACATCAGCGCACAGCGGCGAAGGTGA
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