mRNA_P-littoralis_Contig817.14.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig817.14.2
Unique NamemRNA_P-littoralis_Contig817.14.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig817.14.2 vs. uniprot
Match: A0A6H5KWW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWW8_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 1.080e-90
Identity = 201/382 (52.62%), Postives = 226/382 (59.16%), Query Frame = 1 
Query:    1 MIITTRWQMT-LRFIASVLLFESALSFRQPPLLQHLVPPDDLHRCSFSRLPPPSXXXXXSSLSSPCTRGPGVCQRTGGSSISLRPGGLRRMVAGCGRRQRQRERPSAEQPSVVXXXXXXXXGEGCREAGPGRAVGVPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHGHQFDSDFLFEQKLESIRAALLCGAVGAASRLLGVGAGALIPVGLLRDVLAAPEPAASSLLFCLAAGFVQGALFGLTYRYVVRSDRE-TPNAAGGDTATRTSTDPPALQMDVFTVGHLGDGCVAAFALTSALAQSEVPLTLAAGEFVGVLGREGGIVEAFAAVLLPAAPFLPRAAGDLFLYSATRTAIDRALDLGAIKPFP 1140
            M ++ RWQ   +RF+AS+L FESALSF  PP+ Q           S+S           S L  P T    + +R+  +  SL P   R  VAG   RQR R   S + P +         G    E G G A  + A+                                       X      DSDFLFEQKLES+RAA+LCG+VGA SRLL VGAG L+P GL R+ LAAPEPA SSLLF LAAGF QGALFGLTYRYVVRSDRE +P+A  G+        PP  QMD FTVGHLGDGCVAAFALTSAL QSE PLTLAAGEFVGVLGR GGI+EA AAVLLPAAPFLPRAA DLFLY+A R AIDRALD G IKPFP
Sbjct:    1 MFVSARWQRNAVRFVASILFFESALSFAPPPVQQQPA-------LSWS-----------SPLLLPATAT--LQRRSSSNGSSLWP--ARAAVAGYRHRQRHRGAASQQTPRLAMSSSAGRNGA-APERGDGAAANI-ASAAGGAFGVADEPGDAQSSKAQTQVPPKTGATQTGQASRRXXXXXXXDSDFLFEQKLESVRAAVLCGSVGATSRLLAVGAGGLLPGGLFREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGE--------PPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVGVLGRGGGILEALAAVLLPAAPFLPRAAADLFLYTAARLAIDRALDEGVIKPFP 350
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BLAST of mRNA_P-littoralis_Contig817.14.2 vs. uniprot
Match: D8LP08_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP08_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 4.310e-78
Identity = 144/185 (77.84%), Postives = 154/185 (83.24%), Query Frame = 1 
Query:  535 RHGHQFDSDFLFEQKLESIRAALLCGAVGAASRLLGVGAGALIPVGLLRDVLAAPEPAASSLLFCLAAGFVQGALFGLTYRYVVRSDRE-TPNAAGGDTATRTSTDPPALQMDVFTVGHLGDGCVAAFALTSALAQSEVPLTLAAGEFVGVLGREGGIVEAFAAVLLPAAPFLPRAAGDLFLYSA 1086
            R  H  DSDFLFEQKLES+RAA+LCG+VGAASRLL VGAGAL+P GLLR+ LAAPEPA SSLLF LAAGF QGALFGLTYRYVVRSDRE +P+A  G+        PP  QMD FTVGHLGDGCVAAFALTSAL QSE PLTLAAGEFV VL R GGI+EA AAVLLPAAPFLPRAA DLFLYS+
Sbjct:   64 RQQHHHDSDFLFEQKLESVRAAVLCGSVGAASRLLAVGAGALLPGGLLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGE--------PPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVRVLWRGGGILEALAAVLLPAAPFLPRAAADLFLYSS 240
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BLAST of mRNA_P-littoralis_Contig817.14.2 vs. uniprot
Match: K9W4I0_9CYAN (Uncharacterized protein n=1 Tax=Crinalium epipsammum PCC 9333 TaxID=1173022 RepID=K9W4I0_9CYAN)

HSP 1 Score: 60.8 bits (146), Expect = 2.890e-7
Identity = 58/196 (29.59%), Postives = 80/196 (40.82%), Query Frame = 1 
Query:  556 SDFLFEQKLESIRAALLCGAVGAASRLLGVGAGALIPVGLLRDVLAAPEPAASSLLFCLAAGFVQGALFGLTYRYVVRSDRETPNAAGGDTATRTSTDPPALQMDVFTVGHLGDGCVAAFALTSALAQSEVPLTL--AAGEFVGVLGREGGIVEAFAAVLLPAAPFLPRAAGDLFLYSATRTAIDRALDLGAIKPF 1137
            S F   ++LESI+A +L G V A    +   A +L+   +   ++     A  +LL   A   + G LFG+TYRY++RSD                           T  HL DG V AF L   LAQ +V L    A   F G+LG E                        + L++  R  +D A+ LG IKPF
Sbjct:    5 SQFNPTERLESIKAGILAGIVVALVYAIATLANSLLLAEVFEALVGLQSKADVNLLVSGAIASLSGCLFGITYRYIIRSD---------------------------TNSHLNDGAVLAFGLVRGLAQVDVGLKFPDAVWSF-GILGIE-----------------------SILLFAIARFTLDLAMQLGWIKPF 149
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BLAST of mRNA_P-littoralis_Contig817.14.2 vs. uniprot
Match: A0A7S2XV80_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV80_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.290e-6
Identity = 53/187 (28.34%), Postives = 82/187 (43.85%), Query Frame = 1 
Query:  574 QKLESIRAALLCGAVGAASRLLGVGAGALIPVGLLRDVLAAPEPAASSLLFCLAAGFVQGALFGLTYRYVVRSDRETPNAAGGDTATRTSTDPPALQMDVFTVGHLGDGCVAAFALTSALAQSEVPLTLAAGEFVGVLGREGGIVEAFAAVLLPAAPFLPRAAGDLFLYSATRTAIDRALDLGAIKP 1134
            Q++ES+++A++ GA    +RL         P  ++ DV        S ++  + +  ++GALFGL YRYV+RSD + P                     VF+   LG G  AAFALTS L  +E  L+    +F+ +  +  G        L+ +A      A     +   +  ID  LD G I P
Sbjct:   93 QRIESLKSAVVGGAAVGGTRLALTVLDGTKPWNMVNDV-----DTLSRVIVEVGSATLEGALFGLLYRYVIRSDMKKPK-----------------DELVFSADQLGGGAAAAFALTSFLPANEERLSRILSDFLSLALQLDGKQADLGTTLMESAYTSGSFALSFIGFLVAKITIDSCLDAGIISP 257
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig817.14.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KWW8_9PHAE1.080e-9052.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP08_ECTSI4.310e-7877.84Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
K9W4I0_9CYAN2.890e-729.59Uncharacterized protein n=1 Tax=Crinalium epipsamm... [more]
A0A7S2XV80_9STRA2.290e-628.34Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig817contigP-littoralis_Contig817:52587..56248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1173022.Cri9333_3535
Model size2072
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categorysignal peptide
Exons3
Evalue3.08e-08
EggNOG OGs2E5DC@1|root,3305C@2|Bacteria,1G9B4@1117|Cyanobacteria,1HCRT@1150|Oscillatoriales
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_007040.1
Cds size1143
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791670.144889-CDS-P-littoralis_Contig817:52586..530701680791670.144889-CDS-P-littoralis_Contig817:52586..53070Pylaiella littoralis U1_48CDSP-littoralis_Contig817 52587..53070 +
1680791670.1582382-CDS-P-littoralis_Contig817:54178..544701680791670.1582382-CDS-P-littoralis_Contig817:54178..54470Pylaiella littoralis U1_48CDSP-littoralis_Contig817 54179..54470 +
1680791670.1691167-CDS-P-littoralis_Contig817:54952..553191680791670.1691167-CDS-P-littoralis_Contig817:54952..55319Pylaiella littoralis U1_48CDSP-littoralis_Contig817 54953..55319 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791670.183014-UTR-P-littoralis_Contig817:55319..562481680791670.183014-UTR-P-littoralis_Contig817:55319..56248Pylaiella littoralis U1_48UTRP-littoralis_Contig817 55320..56248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig817.14.2prot_P-littoralis_Contig817.14.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig817 52587..55319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig817.14.2

>prot_P-littoralis_Contig817.14.2 ID=prot_P-littoralis_Contig817.14.2|Name=mRNA_P-littoralis_Contig817.14.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=381bp
MIITTRWQMTLRFIASVLLFESALSFRQPPLLQHLVPPDDLHRCSFSRLP
PPSSSASSSSLSSPCTRGPGVCQRTGGSSISLRPGGLRRMVAGCGRRQRQ
RERPSAEQPSVVVMLAAGGGGEGCREAGPGRAVGVPAAAAGGAPSSKSEH
QQVNSLRAACMPAAAAAAADPAQASRRRRHGHQFDSDFLFEQKLESIRAA
LLCGAVGAASRLLGVGAGALIPVGLLRDVLAAPEPAASSLLFCLAAGFVQ
GALFGLTYRYVVRSDRETPNAAGGDTATRTSTDPPALQMDVFTVGHLGDG
CVAAFALTSALAQSEVPLTLAAGEFVGVLGREGGIVEAFAAVLLPAAPFL
PRAAGDLFLYSATRTAIDRALDLGAIKPFP*
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mRNA from alignment at P-littoralis_Contig817:52587..56248+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig817.14.2 ID=mRNA_P-littoralis_Contig817.14.2|Name=mRNA_P-littoralis_Contig817.14.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3662bp|location=Sequence derived from alignment at P-littoralis_Contig817:52587..56248+ (Pylaiella littoralis U1_48)
ATGATCATCACAACAAGATGGCAGATGACATTGCGTTTCATCGCTTCGGT
TCTTTTGTTCGAGTCCGCTCTGTCGTTCCGACAGCCGCCGCTCTTGCAGC
ACCTTGTTCCTCCTGATGATCTCCACCGCTGCTCCTTTTCACGGTTGCCG
CCACCATCGTCCTCCGCATCATCATCATCATTGTCATCACCATGCACCCG
AGGTCCCGGTGTGTGTCAGAGGACAGGTGGGAGTAGCATTTCGTTACGGC
CTGGTGGGCTACGAAGAATGGTAGCAGGGTGCGGACGCCGTCAACGGCAA
CGAGAGAGACCGTCAGCAGAGCAGCCCTCGGTCGTTGTTATGCTCGCTGC
AGGAGGAGGAGGAGAAGGATGCCGAGAAGCCGGCCCTGGTCGTGCTGTTG
GTGTTCCTGCTGCTGCTGCTGGCGGCGCACCATCCTCCAAATCTGAACAT
CAGCAGGTGAACAGCTTGCGAGCGGCATGCATGCGTGCCACAGCAACTGC
TGTTGCAGTCGTAGTGTTCGGTTGCCTTTTCGCCGTGCTACGTCTCGCGG
ATAGGTTGTACGCAGAAGTAACAGGTTCGGTGCGGTGTAACTACGGTCAC
GAATCAGTCTCAACATCTCAACCGTCCCTTCCCTGGAAGCGTCAGATTCG
CATCTCCGATGTACTTCGTACTCCAGTACATGTGTGATGCACTCGTAGCA
GGCGTGCCGTGCAAAATAGAGACTGTACAATATTATTAGGATATAAGTTT
GTTTGTTCCAACAGCGCCACCGCCACGAAAGCCCGAAGAGATTCCGACAG
CCTTACCCCGACGCCGCCAAAAGCAAGGACACACTTACTTTGCGCATCTT
CATCATACCTGTACACAACGACACGAGCACACACAGCATCGACGACGACT
CCTCGACTCTTCGGCAACAATCTGATCATGCATAAACAAAAGCAAGCACG
GCGAAGCTCGATTGTCATCGACCGCCGCATGACATGATATGACAGGCATA
CCTCTACCTCCACTCGGCACAAAACAATACTGTGGTTTATTTCATTCCGC
ACCCAAACGGCTGCAGAGGCTGACGCCCACGGACGCTTGTCGATGTGGTA
GCTTGAAGCAGCGGAAATACAGCAGTACTTCGGCGTAAAAGGAGATGGTA
CGATGACTAAGCACGGCGCTTGCCAAAAAGTGGCCCACACAAACAGGATT
CTGGTACAAACAGATTGAGTGATGGTGGCCGAGTCAGCAAACGAGTAGTA
TCGAGGACGATCCGGCGAGATCACAGGGGGTGACGCCGATCACCGAACGT
CGACACGAAGTACGTATTACAGCAATCATGCCTCCGCATACGCTAAATGC
CAGCGACACACATGGTACCGACTACTACATCACCACTGAATGAACGTAAT
TCACGAGCAGTCCTACTGAACAGCAGTGACTACGAACGAAAAGGAGATGC
CGAAACATTTTTTAGCAACCACTGGACGGTACTTCGATCAAAGAATAAAA
TGATCCCTTAGCAGACTTTCATTTGCACCTGTCGCCCCGTAAACACATCT
CCGGCAAATAAACTCTCCAGATCGTGTCGTCTTCGGTAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGACCCGGCGCAAGCTTCGCGCCGTCGCCGCCACGG
ACACCAATTCGACAGCGACTTCCTTTTTGAGCAAAAGCTTGAGAGCATTC
GGGCCGCGCTCCTGTGCGGGGCCGTCGGCGCGGCCTCGCGCTTGCTGGGC
GTCGGTGCCGGGGCGCTTATTCCGGTGGGTCTCTTGAGGGATGTGCTGGC
GGCGCCTGAGCCGGCGGCGTCTTCCCTTCTCTTCTGCCTGGCGGCGGGAT
TTGTGCAAGGGGCACTGTTCGGATTGACCTACCGGTAGGAGAAAAGAGAG
ATGGGAAGAGAGAGAGGAAGAGAGGGAGAGACAAAGAGAAAGCGAGAGAG
AGAAAATTAAGCTGACTATTGATAGGTTTGAATGCTCTGCAAGTCCATCT
CTTGTCTGTGTAAATAAGGAAGCATCGTGTGTAGGGCTATGAATCGGCGT
AGTTTCCCGATATTTTAAACATCGGTTTTCGGCGCAGCCGATACTCCGAT
GTATCGGAGCAGCTGATGCATCGGGCGAGCGCAGCGATCCCCGTCCGGCT
CCCCAAAATTCTTTTTGACCGATTTTTGGCGCATTGTTGACCAATTATTG
ATTTTCAATAACATCAGAAAATATCGGTCTGATTTTCCGACTACGTGTCC
GATTTAAATAGAAACGATCAATTGGTTGAATCGGCAGCGTACATAGCCCT
AATCGTGTGCGTATCTGTGATGTGTCTGTCTGTCTGTCTGTCTGTCTGTC
TGTCCGCTTCTCACAGGTACGTCGTGCGCTCCGACCGCGAAACACCGAAC
GCTGCCGGCGGCGACACGGCGACGAGGACGTCAACGGACCCGCCCGCTTT
GCAAATGGACGTGTTCACCGTGGGTCACCTGGGGGACGGCTGCGTGGCCG
CGTTCGCCTTGACCTCTGCACTGGCGCAAAGCGAGGTGCCCTTGACCCTG
GCAGCAGGGGAGTTTGTGGGTGTGTTGGGGCGGGAAGGGGGGATAGTGGA
GGCGTTTGCGGCGGTGCTGCTACCGGCAGCACCGTTTTTGCCGCGCGCGG
CGGGAGACTTGTTCCTGTACTCGGCGACCCGGACGGCGATCGACCGAGCG
CTTGACCTGGGGGCGATCAAGCCTTTCCCCTGAGAAGACATTTCATAGGA
GCTGAAGTTGCTGCACACCTGTGCTTGTTGTTGACTGTGGTGGTGTTCGA
TCCACGCCGTGAGAGATTGATTGGCTAGCAAGTTGTGTTGATTTGGCTGG
TTTTGAGTAATCATTGTCGTTGGTTGGCAGGCGCAGATTTTTCCTGCAAC
AAGCAGGTTTAGAGTTAAGCTGTTTGTCTGGTGATTGCTCCGAAATTTTC
CACCCCAACATCCCGCGCGGCCTATTGCTATCGTGCCGTTGTTGCTGTTG
TCGGCTTGTTTTACTGGGAGGGGGGGGCGGGAGAGCGGGTTTAGTAGCGT
TGGTTTTGTTGGCGATCCCGTCTGTGTCCATATCTAATCCTGGTCCGTGG
TATTTTTGTCACTTCATGTCGCGGTCCAGACAAGATAAGTGCGTAGTGTT
GTGTGAATGATTTTACTCTCTCTATCCCGAGTGTAGACAAAATGCGCTGT
GGACAAAATGCACTGATTTTGTTTTCTTTAAGCGCTTTTCCTGGTTCTGA
CGGATGATGAGGCTTTATACTAGGGGTATCAAAGTGCTGCGACAAATAGT
TAACATGGATCGGTTGTGTTAAAAGCACGTTGTTTTATCCTACTTCGTGT
AGTGTTCGCCCTTGATAGCGATCTCTCGTGTAGTCATTGCTGTACTTTAT
GTTAAGTTGTCCGGGTGGCGGAAAGGGCACCATGTATTACGGTGTCCTGG
GATGGAAAGAAGGCGTGTAATGTTAAAAGTACGCGTGCAGGTGACGGTGC
CGTATGGTGTATGGTGAGGTGAAACAACAGTACCATCCTGCCAAGCGGCC
GCTCGTGAGGGTCGGTCTTCACACAAATTCTCCCAATCGAAAATCGAAAA
TCGAAAATGGCACTCATTGGGCGATGTACGATGTTAGCCCTGAAGTTTAA
AGAAAATAACTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig817:52587..56248+

>mRNA_P-littoralis_Contig817.14.2 ID=mRNA_P-littoralis_Contig817.14.2|Name=mRNA_P-littoralis_Contig817.14.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1143bp|location=Sequence derived from alignment at P-littoralis_Contig817:52587..56248+ (Pylaiella littoralis U1_48)
ATGATCATCACAACAAGATGGCAGATGACATTGCGTTTCATCGCTTCGGT
TCTTTTGTTCGAGTCCGCTCTGTCGTTCCGACAGCCGCCGCTCTTGCAGC
ACCTTGTTCCTCCTGATGATCTCCACCGCTGCTCCTTTTCACGGTTGCCG
CCACCATCGTCCTCCGCATCATCATCATCATTGTCATCACCATGCACCCG
AGGTCCCGGTGTGTGTCAGAGGACAGGTGGGAGTAGCATTTCGTTACGGC
CTGGTGGGCTACGAAGAATGGTAGCAGGGTGCGGACGCCGTCAACGGCAA
CGAGAGAGACCGTCAGCAGAGCAGCCCTCGGTCGTTGTTATGCTCGCTGC
AGGAGGAGGAGGAGAAGGATGCCGAGAAGCCGGCCCTGGTCGTGCTGTTG
GTGTTCCTGCTGCTGCTGCTGGCGGCGCACCATCCTCCAAATCTGAACAT
CAGCAGGTGAACAGCTTGCGAGCGGCATGCATGCCAGCAGCAGCAGCAGC
AGCAGCAGACCCGGCGCAAGCTTCGCGCCGTCGCCGCCACGGACACCAAT
TCGACAGCGACTTCCTTTTTGAGCAAAAGCTTGAGAGCATTCGGGCCGCG
CTCCTGTGCGGGGCCGTCGGCGCGGCCTCGCGCTTGCTGGGCGTCGGTGC
CGGGGCGCTTATTCCGGTGGGTCTCTTGAGGGATGTGCTGGCGGCGCCTG
AGCCGGCGGCGTCTTCCCTTCTCTTCTGCCTGGCGGCGGGATTTGTGCAA
GGGGCACTGTTCGGATTGACCTACCGGTACGTCGTGCGCTCCGACCGCGA
AACACCGAACGCTGCCGGCGGCGACACGGCGACGAGGACGTCAACGGACC
CGCCCGCTTTGCAAATGGACGTGTTCACCGTGGGTCACCTGGGGGACGGC
TGCGTGGCCGCGTTCGCCTTGACCTCTGCACTGGCGCAAAGCGAGGTGCC
CTTGACCCTGGCAGCAGGGGAGTTTGTGGGTGTGTTGGGGCGGGAAGGGG
GGATAGTGGAGGCGTTTGCGGCGGTGCTGCTACCGGCAGCACCGTTTTTG
CCGCGCGCGGCGGGAGACTTGTTCCTGTACTCGGCGACCCGGACGGCGAT
CGACCGAGCGCTTGACCTGGGGGCGATCAAGCCTTTCCCCTGA
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