mRNA_P-littoralis_Contig814.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig814.1.1
Unique NamemRNA_P-littoralis_Contig814.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig814.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig814contigP-littoralis_Contig814:45456..49211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size195
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size102
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791668.1850708-UTR-P-littoralis_Contig814:45455..455161680791668.1850708-UTR-P-littoralis_Contig814:45455..45516Pylaiella littoralis U1_48UTRP-littoralis_Contig814 45456..45516 -
1680791668.2208133-UTR-P-littoralis_Contig814:49179..492111680791668.2208133-UTR-P-littoralis_Contig814:49179..49211Pylaiella littoralis U1_48UTRP-littoralis_Contig814 49180..49211 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791668.1980066-CDS-P-littoralis_Contig814:45516..455581680791668.1980066-CDS-P-littoralis_Contig814:45516..45558Pylaiella littoralis U1_48CDSP-littoralis_Contig814 45517..45558 -
1680791668.210105-CDS-P-littoralis_Contig814:49119..491791680791668.210105-CDS-P-littoralis_Contig814:49119..49179Pylaiella littoralis U1_48CDSP-littoralis_Contig814 49120..49179 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig814.1.1prot_P-littoralis_Contig814.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig814 45517..49179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig814.1.1

>prot_P-littoralis_Contig814.1.1 ID=prot_P-littoralis_Contig814.1.1|Name=mRNA_P-littoralis_Contig814.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=34bp
MNDRGNRVVQRKANSRSTVYWFNIKRTADPQCT*
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mRNA from alignment at P-littoralis_Contig814:45456..49211-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig814.1.1 ID=mRNA_P-littoralis_Contig814.1.1|Name=mRNA_P-littoralis_Contig814.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3756bp|location=Sequence derived from alignment at P-littoralis_Contig814:45456..49211- (Pylaiella littoralis U1_48)
ATATTACAATACCTTGTGCAACCGAGGCAGACATGAACGACAGAGGAAAT
CGAGTGGTTCAACGTAAAGCGAACAGCAGATCCACAGTGTACGTGACATT
TCAGCAAAAAACAACACTCCGGAGCATCGTTCTCCGTCCCATTGCAACAC
GCCGCAACCAAACTCGCCTCGACCCCACAACCAACCCCAACGCCATGTTG
ATACGCACCAGACTCCGATACCCTTATGCATTCCAGCCAGCGACAATGGT
ACCTACGGTCAAGGCGAAAACACCTGTATTGTGCGATCAATTCGTGAATA
AACAAAATCCGATCGTACCATCGACGAGGGAAGGGGATTGCTGTCCCTTT
TCTCGCGATATAAGCTCAACCAAAAACAAGGCAAGCACCGCAGAGGGAAG
TGGAGAAAAAGAAAATACTCCTGTGTTGACTTCCCCCTGTGTGACCCCGG
TTGGAGCGTCTACCTACCCGAAAGGAGTACTGTAGATAGAGTTGTTTGTT
GTTGTTGTTGTCTTCACATCAATAACCATTCCGATCTCTTCTCAGTACCT
TCTAATGTCCGTACTCCACCGATGAGGTACGATTTCCGTGGTCACAGGCT
GCTTGCTCCAGAAGAGGTATATAGTGCTCAGGATCTCCCCTCAGTCCACC
AAATAAAGGCACGACTAGGAGACTCCGGCAAAAATAAAAACGGACCCACC
CCGAGAAATCACACAACGCTGTACAAAAATAGACCAAGATGATACAAGAA
AACAAGAAAAGGGAGCCTGGTCCAGAGCCAAGTCACAAAATGAAACGAAA
AGAAATAAAAAGGCAAAAAAAAAATAAAAAGTCACAGAGGAGTGACAAAA
AGACCAAAAGACACAGAACTCAGTTGCCAAGGTGTCGATAAAATGGACAT
CGGGCGTGCTACTCTCTTCACCGGCCCAGTAACAGTTTCAGGCAGCGCAA
GTACGCAGGCGTGAAGGGGGCAAAAAGGCAGAAGGGCAGAAAAAAACAGA
GGAAGAACACGAAGAGAAAACTCCGAAGGACGTAGTCCACGGTGGTGACT
CAACAAACAGGGGGGGGCGCACTGATGCAGTGGGGAAACGGATGAGAAGG
GTTAGTGCTATCACAGCAGTGTCAATCAATCTGGTGCATATCCCGTGCTA
CTCTTTCCATCAATTCCCTTTTGCTATCCTCTGCCGCCGTCGTCTCATCC
TTTCGGGTCTTTCTACGCTTGCTTCCTCGAGCTTCCCCCTCCCCGTTCTC
CTCGTCCTCCTCCTCGGTTTTCTCCTTGCTTGAGTGGCGTCCAATTAAAG
GGATAACAACACACACACAGTGTTCCGAGCATACCTTTTATCTTCCGTAT
GATTAGGGTTCGTTGGAGTAACCCCGTACCATGTACCTTGTACCTCGTAT
TATCCGGGATCGAGGGGATGGCATATGTTGACGTCCCCTTTTGTACCAGC
TGTTGGGACTCTTTAGGATCGATGCCCTCGCGCATCGATCTTTGTCCCTT
CCTTCCCTCTTTCTCTAGCAATCAAGCAAGGAGCAATATCATCTTACATC
AGGAACTGCAGCGCACCTGGGTGAGTACTACTGGCTACGAAGCTATCTCG
CGTGACTGAATGAGTGTGACCTCTAGTTTCCATTTCACACTTATTATTTA
TATAAACTGAAAACTGAGTGGAATCAGATCTCTGAGCTATTATATTTGTT
TTTATTTCTTTTTGTCTGTGACATATTTGCCTTTACTTAATGTTCATGGA
AGATTTTTTGACCGGATGACGCATATATGCAACGAACAAATAAATGCTGC
TGCTGCTGCTTCTGCTGCTACTGTGAGTGCTGCCGTTTTTGGTTTGAGGT
CGCTTTGAGCGATGATGCTTTTTTATACGGAGTATATTTGAAAACGCTCT
CCTCAGAGGTTTGAAGTCCCACACTACTACTTGGGGAAGGTTATTATTTA
AAAAGAGGAGAGAGTTCCATGGGTAGCACGTGCAACGCCATACTCGGCGT
ATTGTACCTGAACATACATACTCCGTACATGCTTTTTTGTTTCTACAAAA
ATATACTTCGATGATAAATATGTATAGTTGTTTTAAAATATATACTCCGA
GTATTGGAGTAAATGCAAATGAAAATGGATCTTCCACCGTGTGACGCAGA
CGTTCCAAAAGTCTTACGTTTCAGCCGTAGTTAGTTTTCTATGTTGCCTG
GGTGACAGTGTGATTGTTCAAGTATTTCGTGTCGGACCTCGAGTAATGAG
ACGACCCTTTCAACCACCTTCTTCTTCTTCTTTGTTTGCCAAGACGACGC
TTTAATTTTGTTGCGACTCTTGGCTTTTGACGTGAGAAGGACTACTCTGA
CATAGAACATGTCTCGAAGGCGGGACTTTCGGTGGTTGTTGATTAGTGCT
ATCTTCAACTACATATATTACATGTTGTTTGTTCTAGACATGTATTTGTT
GTTTTTTCTTACCTCTTGTGGTGTGTGAGCATGAAAAATAATACTCCGTA
ATAGAGAAGAGTTCCTTCCATGGATAGCACGTGCAAGACCATCCTCGGCG
TATTACCTGGTATATTGAACATTCATGCCATTGAAAATATGTGTGTCGGC
GATTATTATGTTTCTCCGTGTATTGTTGTTGTCGTTGATTCTTACATCAT
TGGCTCATCGCCAAAATCTAGCCCGTCGTCACGAAAGGTGCTGAGCCCTA
GGAAGATCCAAAAAACAGAAGGAAACTACCACGGAATAGGTACCCAACAA
GAAAGACCGAAAAGATACACCTTCCTACGCGGTGTGCATCACTGAACTAC
AGCAGCACAGTAGTACCAACGTCAAACGTACTTCCAGCGTCGTTACTTTG
ACTACATCGTCTTCAGTCTCCTCCCGCCCCACTTTAACAAGCAGTCATAG
GTAGCTAGACTACAGCAGCAGTTCGTTGCTGTCTGGAGTGCTGCCTGCAA
CGTACAAGTAGCCCCGGCAATCGGAGAAGGCAGAAACAGAAAAAACACAA
AAACACACACGTATCATCAGATGTTGTCGAGGATGGTGTCTCCATGCCGT
CCTTGCGACGCTGGTGATGATGTCGCCCTCAACAAGTCCTCCTTGTCTGG
GTCTAAGGTGCTGTTGGCGTTGCCCAAGGCCACATCGCCAGCACCATGCT
GTCGTAACGCTTCTTCACTGCCGGCGTTGCCTAAGGTCACCTCCATCACC
GCCGCTCTCTCACATAACAGCTCTTTCTTGTTACCGTAATCATGCGTAGG
TTCGCACCCATCGGAAGGTTGGCACCCATCGGAGAGATAGCACCGGGGTG
CGATAAAAAACACAACGTAGAAACATTTAATCGTGTTTTCGCACCCCCAT
CGGAGAGATCGCACCCGGGTGCGATCTCTCCGACATAAATAGAAATTTGA
GGGCCACCGCACCCGATGAGATATCACCAGTGCGCCACTCCTCTCAAACG
TACTTTACCAACGCATGGTAGGTCAAGTCGATTTGGGTAGCTTTGAGTCA
TTCAATTTGTATGCTCTCAACCAAGCACACAGCAAACACCATCTGGTACA
CGCCGCCTACTGTTACACATCACAAATGACAGAACCAGCTCCTGCTACGA
TATTACAATACCTTGTGCAACCGAGGCAGACATGAACGACAGAGGAAATC
GAGTGGTTCAACATAAAGCGAACAGCAGATCCACAGTGTACGTGACATTT
CAGCAAAAAACAACACTCCGGAGCATCGTTCTCCGTCCCATTGCAACACG
CCGCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig814:45456..49211-

>mRNA_P-littoralis_Contig814.1.1 ID=mRNA_P-littoralis_Contig814.1.1|Name=mRNA_P-littoralis_Contig814.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=102bp|location=Sequence derived from alignment at P-littoralis_Contig814:45456..49211- (Pylaiella littoralis U1_48)
ATGAACGACAGAGGAAATCGAGTGGTTCAACGTAAAGCGAACAGCAGATC
CACAGTGTACTGGTTCAACATAAAGCGAACAGCAGATCCACAGTGTACGT
GA
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