mRNA_P-littoralis_Contig811.34.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig811.34.2
Unique NamemRNA_P-littoralis_Contig811.34.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig811.34.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig811contigP-littoralis_Contig811:75974..77041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size315
Hectar predicted targeting categoryother localisation
Exons3
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791666.0085876-CDS-P-littoralis_Contig811:75973..762011680791666.0085876-CDS-P-littoralis_Contig811:75973..76201Pylaiella littoralis U1_48CDSP-littoralis_Contig811 75974..76201 +
1680791666.0232205-CDS-P-littoralis_Contig811:76569..766141680791666.0232205-CDS-P-littoralis_Contig811:76569..76614Pylaiella littoralis U1_48CDSP-littoralis_Contig811 76570..76614 +
1680791666.0370188-CDS-P-littoralis_Contig811:77001..770401680791666.0370188-CDS-P-littoralis_Contig811:77001..77040Pylaiella littoralis U1_48CDSP-littoralis_Contig811 77002..77040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig811.34.2prot_P-littoralis_Contig811.34.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig811 75974..77040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig811.34.2

>prot_P-littoralis_Contig811.34.2 ID=prot_P-littoralis_Contig811.34.2|Name=mRNA_P-littoralis_Contig811.34.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
LRGSFVEQDVCSLILAVDMHVDHALFDERRTSNVGLAEKQHRSSQGSVGT
VSNALFVQEILVGMHKEATPVGAFSELFQDKPGARGALILRESRIFDGLP
QRSR
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mRNA from alignment at P-littoralis_Contig811:75974..77041+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig811.34.2 ID=mRNA_P-littoralis_Contig811.34.2|Name=mRNA_P-littoralis_Contig811.34.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1068bp|location=Sequence derived from alignment at P-littoralis_Contig811:75974..77041+ (Pylaiella littoralis U1_48)
CTGCGAGGCAGTTTCGTGGAACAAGACGTTTGCAGCCTGATCCTTGCTGT
CGACATGCACGTTGACCACGCGCTTTTTGACGAGAGACGCACCTCGAATG
TGGGCCTGGCAGAGAAGCAGCACCGGTCGTCACAAGGCAGTGTTGGAACG
GTCTCTAACGCACTTTTCGTTCAAGAAATATTGGTGGGGATGCACAAAGA
GGCTACGCCTGTGGGAGCATTTTCAGAGGTGAGAGAGGGGATGACCTTGC
GGAGATGCTCTTTGGTATTCCATCGCGTCTCTTCCAGGTAGCGGTGTATA
TATCGTGAGATTCGCCTTCCTCGGGCGTTCGTTACACGCGGATATCCGCA
CAGCGCAGCTGGTTGCCATCGCGAATTTGCCAACAGCAGCTTACACCGAC
ATAAGCCAGACGATTCACACGCGACCACGATCACGTCCGTCTTTTGTGCT
GAGAAACGCATCATTATCATCCATACGCGACACGTTTTTCATAAAGCACA
TGCCCTCTCTAAAAGCCTCGTCGCGTGCGTGCCCCGTATTTTGACCACCA
CCACCGCCCATCGCTTCCTCATAACGACACCACACATGGGGAAAAGCTGT
TCCAGGATAAACCTGGGGCTCGGGGGGCTCTTATACTACGGGTGAGCATT
CGTTTCGACCGTAGATTAGGGTGAGTGCACCCATAAAACACATGCCATAG
GGAACTTGCGCACGTTTGGCAAGCACGTTTTCTCGGGAAGGATTCGTCAC
CCTCGGTGGAAAATGTTCTCCCCTGGACTGGTCCGTCGTGAAAATATTGG
TTACGGCAGACATGTCGTCAGGTTCTTGCTCGCCCGATCGACTTCTCTTC
CCGTCGGCAATTGGTGGAAAATTCTCGATGAATATTTGTATGGATCAGTT
TTCCCCTTTGCCTAAACAGAACACAGATGTGATGTGCGGCATTGTGGAAG
CTCGCTCTTTCAAGTTTGTTCCAACCACATGCAAACCAAACACATGCACT
GTATTTTGAAACACCCGTTCGCAAGCAGGAATCTAGGATTTTTGATGGCC
TTCCACAACGATCCCGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig811:75974..77041+

>mRNA_P-littoralis_Contig811.34.2 ID=mRNA_P-littoralis_Contig811.34.2|Name=mRNA_P-littoralis_Contig811.34.2|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig811:75974..77041+ (Pylaiella littoralis U1_48)
CTGCGAGGCAGTTTCGTGGAACAAGACGTTTGCAGCCTGATCCTTGCTGT
CGACATGCACGTTGACCACGCGCTTTTTGACGAGAGACGCACCTCGAATG
TGGGCCTGGCAGAGAAGCAGCACCGGTCGTCACAAGGCAGTGTTGGAACG
GTCTCTAACGCACTTTTCGTTCAAGAAATATTGGTGGGGATGCACAAAGA
GGCTACGCCTGTGGGAGCATTTTCAGAGCTGTTCCAGGATAAACCTGGGG
CTCGGGGGGCTCTTATACTACGGGAATCTAGGATTTTTGATGGCCTTCCA
CAACGATCCCGC
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