mRNA_P-littoralis_Contig808.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig808.5.1
Unique NamemRNA_P-littoralis_Contig808.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig808.5.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 4.790e-69
Identity = 114/116 (98.28%), Postives = 114/116 (98.28%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKKAGDKK  NKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
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BLAST of mRNA_P-littoralis_Contig808.5.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 197 bits (500), Expect = 4.850e-63
Identity = 103/116 (88.79%), Postives = 112/116 (96.55%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKKAGDK  K KRTESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
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BLAST of mRNA_P-littoralis_Contig808.5.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 193 bits (491), Expect = 7.500e-62
Identity = 105/117 (89.74%), Postives = 110/117 (94.02%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGD-KKTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+AKAPKKA D KK K KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
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BLAST of mRNA_P-littoralis_Contig808.5.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 193 bits (491), Expect = 5.100e-60
Identity = 105/117 (89.74%), Postives = 110/117 (94.02%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGD-KKTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+AKAPKKA D KK K KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
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BLAST of mRNA_P-littoralis_Contig808.5.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 188 bits (478), Expect = 6.330e-60
Identity = 99/115 (86.09%), Postives = 109/115 (94.78%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 345
            MAKTPSKK+AKAPKKAG K+  NKR E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS 113
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BLAST of mRNA_P-littoralis_Contig808.5.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.060e-59
Identity = 101/118 (85.59%), Postives = 110/118 (93.22%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDK--KTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKK G+K    K KR ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
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BLAST of mRNA_P-littoralis_Contig808.5.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 184 bits (468), Expect = 2.260e-58
Identity = 98/116 (84.48%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK+SAKAPKKA       KRTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_P-littoralis_Contig808.5.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 183 bits (465), Expect = 7.590e-58
Identity = 99/115 (86.09%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 345
            MAKTPSKK+A APKKAG K+++ KRTESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S
Sbjct:    8 MAKTPSKKAA-APKKAGGKRSR-KRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSS 120
[Close]
BLAST of mRNA_P-littoralis_Contig808.5.1 vs. uniprot
Match: A0A7R9ZTA9_9STRA (Histone H2B n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZTA9_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.100e-55
Identity = 97/115 (84.35%), Postives = 107/115 (93.04%), Query Frame = 1 
Query:    7 KTPSKKSAKAPKKAGDKKTKNK-RTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            KTPSK+SAKAPKKA    +K+K RTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:   64 KTPSKQSAKAPKKASTGSSKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 178
[Close]
BLAST of mRNA_P-littoralis_Contig808.5.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 177 bits (450), Expect = 1.420e-55
Identity = 99/119 (83.19%), Postives = 111/119 (93.28%), Query Frame = 1 
Query:    1 MAKTPSKKS-AKAPKKA--GDKKTKNK-RTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 345
            MAKTPSK++ AKA KKA  GDKK ++K R ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSS 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig808.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI4.790e-6998.28Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA4.850e-6388.79Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA7.500e-6289.74Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A836CJT3_9STRA5.100e-6089.74Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
H2B_OLILU6.330e-6086.09Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A485K2U0_9STRA1.060e-5985.59Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
B7FWR8_PHATC2.260e-5884.48Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U6DWX5_9STRA7.590e-5886.09Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
A0A7R9ZTA9_9STRA1.100e-5584.35Histone H2B n=1 Tax=Craspedostauros australis TaxI... [more]
B8BX20_THAPS1.420e-5583.19Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig808contigP-littoralis_Contig808:9195..9554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWI8
PFAMsHistone
Model size360
Max annot lvl2759|Eukaryota
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
Exons1
Evalue7.85e-70
EggNOG OGsKOG1744@1|root,KOG1744@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size360
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791655.4828906-CDS-P-littoralis_Contig808:9194..95541680791655.4828906-CDS-P-littoralis_Contig808:9194..9554Pylaiella littoralis U1_48CDSP-littoralis_Contig808 9195..9554 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig808.5.1prot_P-littoralis_Contig808.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig808 9195..9554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig808.5.1

>prot_P-littoralis_Contig808.5.1 ID=prot_P-littoralis_Contig808.5.1|Name=mRNA_P-littoralis_Contig808.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
MAKTPSKKSAKAPKKAGDKKTKNKRTESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSSYSA*
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mRNA from alignment at P-littoralis_Contig808:9195..9554+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig808.5.1 ID=mRNA_P-littoralis_Contig808.5.1|Name=mRNA_P-littoralis_Contig808.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig808:9195..9554+ (Pylaiella littoralis U1_48)
ATGGCCAAGACCCCCTCCAAGAAGTCCGCCAAGGCCCCCAAGAAGGCTGG
CGACAAGAAGACAAAGAACAAGAGGACCGAGTCGTACTCTTCGTACATCT
ACAAGGTGCTCAAGCAGGTGCACCCCGACACCGGTATCTCCAAGCGCGGC
ATGTCGATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTGGCCGG
CGAGTCCGGCAAGCTCACCCGCTACAACAAAAAGGCGACCCTGTCCTCGC
GCGAGGTCCAGACCGCGGTGCGTCTCATGCTCCCCGGAGAGCTGGCCAAG
CACGCCGTATCCGAGGGCACGAAGGCTGTCACCAAGTTCACCTCTTCCTA
CTCGGCGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig808:9195..9554+

>mRNA_P-littoralis_Contig808.5.1 ID=mRNA_P-littoralis_Contig808.5.1|Name=mRNA_P-littoralis_Contig808.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig808:9195..9554+ (Pylaiella littoralis U1_48)
ATGGCCAAGACCCCCTCCAAGAAGTCCGCCAAGGCCCCCAAGAAGGCTGG
CGACAAGAAGACAAAGAACAAGAGGACCGAGTCGTACTCTTCGTACATCT
ACAAGGTGCTCAAGCAGGTGCACCCCGACACCGGTATCTCCAAGCGCGGC
ATGTCGATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTGGCCGG
CGAGTCCGGCAAGCTCACCCGCTACAACAAAAAGGCGACCCTGTCCTCGC
GCGAGGTCCAGACCGCGGTGCGTCTCATGCTCCCCGGAGAGCTGGCCAAG
CACGCCGTATCCGAGGGCACGAAGGCTGTCACCAAGTTCACCTCTTCCTA
CTCGGCGTAA
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