mRNA_P-littoralis_Contig808.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig808.1.1
Unique NamemRNA_P-littoralis_Contig808.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig808.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig808contigP-littoralis_Contig808:3250..3967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size495
Hectar predicted targeting categoryother localisation
Exons2
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791655.1946704-CDS-P-littoralis_Contig808:3249..35411680791655.1946704-CDS-P-littoralis_Contig808:3249..3541Pylaiella littoralis U1_48CDSP-littoralis_Contig808 3250..3541 +
1680791655.2146-CDS-P-littoralis_Contig808:3764..39671680791655.2146-CDS-P-littoralis_Contig808:3764..3967Pylaiella littoralis U1_48CDSP-littoralis_Contig808 3765..3967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig808.1.1prot_P-littoralis_Contig808.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig808 3250..3967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig808.1.1

>prot_P-littoralis_Contig808.1.1 ID=prot_P-littoralis_Contig808.1.1|Name=mRNA_P-littoralis_Contig808.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=165bp
MNRPATTGGSGGGAEIASPVVATEAGEPEVAEISGSDSDGIEEKESDERH
DGNSDRRSEASSPGSSTLSWGDGYGGKSDDSDLMGGAWSLKGSCAAADPI
ADDASGQNGARPPVWIIRSAMGWWDCPPGLREYVGSEHGGDERDGGGSSM
DAHSTFISPLLAKD*
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mRNA from alignment at P-littoralis_Contig808:3250..3967+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig808.1.1 ID=mRNA_P-littoralis_Contig808.1.1|Name=mRNA_P-littoralis_Contig808.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=718bp|location=Sequence derived from alignment at P-littoralis_Contig808:3250..3967+ (Pylaiella littoralis U1_48)
ATGAACAGGCCGGCTACGACCGGTGGTAGTGGGGGGGGTGCGGAGATTGC
AAGTCCAGTAGTCGCTACGGAGGCCGGCGAACCAGAGGTGGCAGAGATTT
CTGGCAGTGACTCCGACGGAATCGAAGAGAAGGAGTCGGACGAGCGCCAC
GATGGCAACAGCGACAGACGCTCGGAGGCGTCGTCTCCGGGGAGTTCGAC
CTTGTCCTGGGGAGATGGGTACGGGGGAAAATCGGACGATTCAGATCTGA
TGGGCGGCGCATGGAGCTTAAAGGGCAGTTGTGCCGCGGCAGGTGTGTGT
AATGTGTGAGAGATAGATAGGGTCTGTGTGTGCGTGTGCGTGTGCGTGTG
CTCGCGTGTGCTCGCGTGTGTGTGTCACAATGGGTGTTTTCCGTTTTGAT
TTCAATCTACATGTCCGTACAGGCGCAACACTGTCCAGATTTTTTGTCAA
CAACAGTTCGTTTTATGGGTTTCTGCATGCGTCTTGCTACTGCCTCTGTT
TCGACGGATCAACAGACCCCATCGCGGATGATGCCAGTGGGCAGAACGGG
GCGAGGCCGCCCGTTTGGATAATCCGTTCGGCGATGGGCTGGTGGGATTG
CCCCCCGGGATTGCGAGAATATGTAGGAAGCGAGCACGGTGGGGACGAAA
GAGATGGAGGGGGGAGTTCTATGGACGCGCATTCGACGTTTATTTCACCG
CTTTTGGCCAAGGACTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig808:3250..3967+

>mRNA_P-littoralis_Contig808.1.1 ID=mRNA_P-littoralis_Contig808.1.1|Name=mRNA_P-littoralis_Contig808.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=495bp|location=Sequence derived from alignment at P-littoralis_Contig808:3250..3967+ (Pylaiella littoralis U1_48)
ATGAACAGGCCGGCTACGACCGGTGGTAGTGGGGGGGGTGCGGAGATTGC
AAGTCCAGTAGTCGCTACGGAGGCCGGCGAACCAGAGGTGGCAGAGATTT
CTGGCAGTGACTCCGACGGAATCGAAGAGAAGGAGTCGGACGAGCGCCAC
GATGGCAACAGCGACAGACGCTCGGAGGCGTCGTCTCCGGGGAGTTCGAC
CTTGTCCTGGGGAGATGGGTACGGGGGAAAATCGGACGATTCAGATCTGA
TGGGCGGCGCATGGAGCTTAAAGGGCAGTTGTGCCGCGGCAGACCCCATC
GCGGATGATGCCAGTGGGCAGAACGGGGCGAGGCCGCCCGTTTGGATAAT
CCGTTCGGCGATGGGCTGGTGGGATTGCCCCCCGGGATTGCGAGAATATG
TAGGAAGCGAGCACGGTGGGGACGAAAGAGATGGAGGGGGGAGTTCTATG
GACGCGCATTCGACGTTTATTTCACCGCTTTTGGCCAAGGACTGA
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