mRNA_P-littoralis_Contig802.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig802.10.1
Unique NamemRNA_P-littoralis_Contig802.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig802.10.1 vs. uniprot
Match: D8LMJ3_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ3_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.620e-16
Identity = 41/63 (65.08%), Postives = 52/63 (82.54%), Query Frame = 2 
Query:  143 GGPRKNSKQGCRGLTYLDTISDRFEEESVEIYLGSFHQQALIAEAKRVLSQPRNRGLGIELMA 331
            GG  + +K G  GL +L ++SD F +E VE+YLGSFHQQALI+EAK+VLSQPRNRGLG+EL+A
Sbjct:   83 GGALQGNKDG-HGLKFLGSLSDVFGDEMVEVYLGSFHQQALISEAKKVLSQPRNRGLGVELVA 144
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BLAST of mRNA_P-littoralis_Contig802.10.1 vs. uniprot
Match: A0A6H5K7M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M8_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.040e-14
Identity = 42/82 (51.22%), Postives = 58/82 (70.73%), Query Frame = 2 
Query:   86 TMLSTFSIGGAKYGDDAGSGGPRKNSKQGCRGLTYLDTISDRFEEESVEIYLGSFHQQALIAEAKRVLSQPRNRGLGIELMA 331
            T + T  +  + +G + G  G + N  +   GL  L ++SD F +E VE+YLGSFHQQA+I+EAK+VLSQPRNRGLG+EL+A
Sbjct:   60 TRVRTGGLSSSGFGIEGG--GLQGNKDE--HGLKLLGSLSDVFGDELVEVYLGSFHQQAVISEAKKVLSQPRNRGLGVELVA 137
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig802.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMJ3_ECTSI2.620e-1665.08Ankyrin repeat domain protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K7M8_9PHAE1.040e-1451.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig802contigP-littoralis_Contig802:64529..64859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LMJ3
PFAMsAnk_2,Ank_3,Ank_5,PID,PKD_channel,SAM_1
Model size333
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00901,ko:K21413,ko:K21952
KEGG ReactionR02240
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00561,map00564,map01100,map01110,map04070,map04072,map05231
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515
Exons1
Evalue3.54e-17
EggNOG OGsCOG0666@1|root,KOG3599@1|root,KOG0507@2759|Eukaryota,KOG3599@2759|Eukaryota
EC2.7.1.107
Descriptiondetection of mechanical stimulus
Cds size315
COG categoryE
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791651.5856962-CDS-P-littoralis_Contig802:64528..648431680791651.5856962-CDS-P-littoralis_Contig802:64528..64843Pylaiella littoralis U1_48CDSP-littoralis_Contig802 64529..64843 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791651.6043706-UTR-P-littoralis_Contig802:64843..648591680791651.6043706-UTR-P-littoralis_Contig802:64843..64859Pylaiella littoralis U1_48UTRP-littoralis_Contig802 64844..64859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig802.10.1prot_P-littoralis_Contig802.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig802 64529..64843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig802.10.1

>prot_P-littoralis_Contig802.10.1 ID=prot_P-littoralis_Contig802.10.1|Name=mRNA_P-littoralis_Contig802.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MFTGGRRSCDRRLSSRREGSTSTTMLSTFSIGGAKYGDDAGSGGPRKNSK
QGCRGLTYLDTISDRFEEESVEIYLGSFHQQALIAEAKRVLSQPRNRGLG
IELMA
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mRNA from alignment at P-littoralis_Contig802:64529..64859-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig802.10.1 ID=mRNA_P-littoralis_Contig802.10.1|Name=mRNA_P-littoralis_Contig802.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=331bp|location=Sequence derived from alignment at P-littoralis_Contig802:64529..64859- (Pylaiella littoralis U1_48)
GAATCACCGCATCACCATGTTCACTGGTGGAAGGCGGTCATGCGATAGGA
GATTATCGAGCCGACGCGAGGGATCAACATCTACCACCATGCTTTCCACT
TTCAGTATTGGCGGCGCGAAGTACGGTGATGACGCTGGTTCAGGAGGACC
ACGAAAAAACAGCAAACAAGGTTGTCGCGGCCTTACGTACCTCGACACGA
TTTCTGATAGGTTCGAGGAGGAATCGGTCGAGATTTATCTTGGAAGTTTC
CACCAGCAAGCGCTCATCGCGGAGGCGAAAAGGGTGCTGTCTCAGCCGCG
GAACAGGGGACTGGGTATAGAGCTGATGGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig802:64529..64859-

>mRNA_P-littoralis_Contig802.10.1 ID=mRNA_P-littoralis_Contig802.10.1|Name=mRNA_P-littoralis_Contig802.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig802:64529..64859- (Pylaiella littoralis U1_48)
ATGTTCACTGGTGGAAGGCGGTCATGCGATAGGAGATTATCGAGCCGACG
CGAGGGATCAACATCTACCACCATGCTTTCCACTTTCAGTATTGGCGGCG
CGAAGTACGGTGATGACGCTGGTTCAGGAGGACCACGAAAAAACAGCAAA
CAAGGTTGTCGCGGCCTTACGTACCTCGACACGATTTCTGATAGGTTCGA
GGAGGAATCGGTCGAGATTTATCTTGGAAGTTTCCACCAGCAAGCGCTCA
TCGCGGAGGCGAAAAGGGTGCTGTCTCAGCCGCGGAACAGGGGACTGGGT
ATAGAGCTGATGGCT
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