mRNA_P-littoralis_Contig802.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig802.6.1
Unique NamemRNA_P-littoralis_Contig802.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig802.6.1 vs. uniprot
Match: D8LMJ3_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ3_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.830e-29
Identity = 134/367 (36.51%), Postives = 171/367 (46.59%), Query Frame = 1 
Query:   43 GVMKMLRNVSASVHQRVSQLKNSLIPSGKERLHSWNEAREISIVIARSLVEFPLSEAAAQEGTAAAIGCHPPQIPAQLKAAGSRGVSFMRQLATGRPTFRGPKGATGRTHHLTSAAVEARGDVGKISVDGAVYDRDNNSSNNYNRGKSRYGGNTRSSNSDGPRSSTAPGDRYDGDSSWVSGDEILRTLGGGYLAVTALCTLSRAVALQGMMKQAADASKVAPSSNNNSSNGH-------DDYDEAFGHFGATQEVIELVSLLASLFRLGSPTSQVTMAGGEKESQSQLSPVPSLAAAAAGAGVDGTSITGLPPTQAEVEDALAAGQCTALFRRGFSTDMPHSTLLPLPQYWSRGSFFGGATRGKPGG 1122
            GV + LR+   SV Q VS L  SL  SG ER  SWNEAR++SI IAR LVEFPLS AAA   ++AA G        Q      + V  +R    G P      G +G  H+    A        +  V          S   +   KS          S    S   PG+ Y G   W  GDE+LRT+GGG+L +  L TLSRA+      + AA A      S   +++ H       +D  E FG +  +QEV +L+ LLA+LFRLGSP SQV   G    +  ++SP     A A G G        LPPT  EVE ALAAG+ TA  RR  S  +      P  Q  S+ +  GG  +G+ GG
Sbjct: 1171 GVGEALRSSMTSVRQWVSNLTGSLTSSGTERRQSWNEARKLSIKIARVLVEFPLSPAAADGDSSAAAG--------QENNTAHQKVEQLRVARFGGPI----NGRSGHHHYHDQGAAANTNTATRAPVAPGGTTNPTTSKVQHRNRKS----------SGACLSPAEPGNGYGG--WWGEGDEVLRTMGGGFLTIACLSTLSRAIPSPAT-RPAAGAPSTPHGSGTFTNHHHKLPHHHSNDVKEVFGQYEVSQEVSDLLLLLAALFRLGSPPSQVP--GMISATLGRVSPSSPTTAPAPGGGAVNEV---LPPTVTEVEAALAAGKATASRRRRSSFAVAPPLSRPAQQDRSKSARTGGV-KGRLGG 1506
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BLAST of mRNA_P-littoralis_Contig802.6.1 vs. uniprot
Match: A0A6H5KA16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA16_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.040e-8
Identity = 80/233 (34.33%), Postives = 107/233 (45.92%), Query Frame = 1 
Query:  175 IARSLVEFPLSEAAAQEGTAAAIGCHPPQIPAQLKAAGSRGVSFMRQLATGRPTFRG--PKGATGRTHHLTSAAVEARGDVGKISVDGAVYDRDNNSSNNYNRGKSRYGGNTRSSNSDGPRSSTA-PGDRYDGDSSWVSGDEILRTLGGGYLAVTALCTLSRAVALQGMMKQAAD-----ASKVAPSSNNNSSNGHD-DYDEAFGHFGATQEVIELVSLLASLFRLGSPTSQV 846
            +A+ LVEFPLS AAA   + AA G       A  K    R   F   +  GRP       +GA   T+  T A V   G   + +    V  R+ NSS                    G  SS A P + Y G   W  GD++LRT+GGG+L +  L TLSRA++       A        S    +  + S + H+ D  + FG +  +QEV +L+ LLA+LFRLGSP SQV
Sbjct:   18 VAQVLVEFPLSPAAADGDSFAAAGQE--NNTAHPKVEQVRAARFGGPM-NGRPGHHHYCDQGAAANTNTATRAPVAPGGTTNRTTS--KVQQRNRNSS--------------------GACSSPAGPDNGYGG--WWGEGDKVLRTMGGGFLTIACLSTLSRAISSPATRPVAGTPPTPHGSGTFTNHPHKSPHHHNNDVKDVFGQYEVSQEVSDLLLLLAALFRLGSPPSQV 223
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig802.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMJ3_ECTSI2.830e-2936.51Ankyrin repeat domain protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KA16_9PHAE1.040e-834.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig802contigP-littoralis_Contig802:25344..29143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LMJ3
PFAMsAnk_2,Ank_3,Ank_5,PID,PKD_channel,SAM_1
Model size1521
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00901,ko:K21413,ko:K21952
KEGG ReactionR02240
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00561,map00564,map01100,map01110,map04070,map04072,map05231
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515
Exons4
Evalue4.63e-30
EggNOG OGsCOG0666@1|root,KOG3599@1|root,KOG0507@2759|Eukaryota,KOG3599@2759|Eukaryota
EC2.7.1.107
Descriptiondetection of mechanical stimulus
Cds size1521
COG categoryE
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791651.356578-CDS-P-littoralis_Contig802:25343..259151680791651.356578-CDS-P-littoralis_Contig802:25343..25915Pylaiella littoralis U1_48CDSP-littoralis_Contig802 25344..25915 -
1680791651.3733952-CDS-P-littoralis_Contig802:26716..268221680791651.3733952-CDS-P-littoralis_Contig802:26716..26822Pylaiella littoralis U1_48CDSP-littoralis_Contig802 26717..26822 -
1680791651.3868785-CDS-P-littoralis_Contig802:27559..282441680791651.3868785-CDS-P-littoralis_Contig802:27559..28244Pylaiella littoralis U1_48CDSP-littoralis_Contig802 27560..28244 -
1680791651.4003298-CDS-P-littoralis_Contig802:28985..291431680791651.4003298-CDS-P-littoralis_Contig802:28985..29143Pylaiella littoralis U1_48CDSP-littoralis_Contig802 28986..29143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig802.6.1prot_P-littoralis_Contig802.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig802 25344..29143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig802.6.1

>prot_P-littoralis_Contig802.6.1 ID=prot_P-littoralis_Contig802.6.1|Name=mRNA_P-littoralis_Contig802.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=507bp
QRPRSFQEPSRDSSGVMKMLRNVSASVHQRVSQLKNSLIPSGKERLHSWN
EAREISIVIARSLVEFPLSEAAAQEGTAAAIGCHPPQIPAQLKAAGSRGV
SFMRQLATGRPTFRGPKGATGRTHHLTSAAVEARGDVGKISVDGAVYDRD
NNSSNNYNRGKSRYGGNTRSSNSDGPRSSTAPGDRYDGDSSWVSGDEILR
TLGGGYLAVTALCTLSRAVALQGMMKQAADASKVAPSSNNNSSNGHDDYD
EAFGHFGATQEVIELVSLLASLFRLGSPTSQVTMAGGEKESQSQLSPVPS
LAAAAAGAGVDGTSITGLPPTQAEVEDALAAGQCTALFRRGFSTDMPHST
LLPLPQYWSRGSFFGGATRGKPGGRGQGPGNGQAAADHHLPTPTQNRHVP
YTIENHCHTNPNNNERESRPRERESWPNPALPQALPHESSGGRRTATNTP
QLVVAAPRSAATLPLSSGRQKLAGAPQESETSLTAGLERMHRQFSAFHVH
STPDKAP
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mRNA from alignment at P-littoralis_Contig802:25344..29143-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig802.6.1 ID=mRNA_P-littoralis_Contig802.6.1|Name=mRNA_P-littoralis_Contig802.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3800bp|location=Sequence derived from alignment at P-littoralis_Contig802:25344..29143- (Pylaiella littoralis U1_48)
CAGCGTCCGAGATCTTTCCAGGAGCCTTCGAGAGACTCGTCCGGGGTGAT
GAAGATGTTGCGAAACGTTTCCGCTAGTGTTCACCAACGGGTCTCGCAAC
TAAAGAATTCGTTGATTCCGTCGGGAAAAGAGAGGCTTCACAGCTGGAAC
GAGGCCAGGTGATTTATTTAGTCTACTGTTTGCCGGAAACAAAACATGTG
TGATCGTCGTTGGCATTTAACTTCCACCGGAACGCGCTTGTTCCCGCCTC
TTGCAAGGTGGCGGCAACCGTCAAGGGTTGGTTGAGACGGGTCTTGGCAC
ACTGGCCAACAAACATTAGGTTGCGGTCGTTATAACTTGAACTACTGCCT
AGGTGAAAAACCCGGGATAATATCGCTCGTATAGTCTCCACTGCTACTAC
ATGTTGTGGTATTGGCTCCGTTTTGAACAGCCTTGGGAAACGCCGTTCAT
CGCTTTTATATCTCCTCGACCGTAATCCCTGCCACATGTGTATCGAGACA
GGGATCCTTTAGTGTCCATGGTGTATGTAAGGTAGGGCATGTCTACCGCT
TGCTTTAACTTCAGGTGTGGGGACACATTAAATTACGCCCATCCGCAGAA
CACACCCAGATGTTATAAGTGAACACTTTGAACTACAGGTGTGTAAAGTA
GAATAATGCCAGTTTCAGCTGCCGGTTAAGCGTCGAACAAATCGGCCGAG
CTGTATTCTGTTTAGGAAACACCACCCCATAGGACATCCATATATGTCAC
GCAACTTCCCTCTCCAGCAAAACCATTCATTCGCAGCACGAATGGCAGAC
GAAGTCAAAAGTGAGATACGAAGAACAGCGGACGGACTGGAAACAATGCA
ACACGAAACAACTATTTCTCGAAACGCAAAACACACGCCCTTTGAGCAGG
GAAATATCGATAGTGATCGCTCGATCCCTTGTGGAGTTTCCGCTTTCCGA
AGCAGCGGCTCAGGAAGGTACTGCGGCCGCCATCGGTTGTCATCCACCGC
AAATCCCGGCGCAACTGAAGGCGGCGGGCTCAAGAGGGGTGTCATTCATG
CGTCAGCTGGCTACTGGCCGTCCAACCTTCAGGGGCCCTAAAGGTGCAAC
AGGGAGGACCCACCATTTGACGAGCGCAGCGGTAGAAGCAAGAGGCGACG
TTGGGAAAATCTCTGTGGATGGTGCAGTCTACGACAGAGACAACAACAGC
AGCAACAACTACAACAGGGGAAAGAGTAGGTACGGTGGCAATACACGGAG
CAGCAACAGCGATGGACCTAGGTCATCTACTGCGCCGGGGGATCGCTACG
ACGGCGATTCGTCATGGGTCTCAGGGGACGAGATTCTGAGAACCCTCGGG
GGGGGTTATTTGGCGGTAACAGCGCTCTGTACGCTGAGCCGGGCCGTTGC
ATTGCAGGGAATGATGAAACAGGCCGCTGATGCCTCAAAAGTCGCCCCGA
GCAGTAACAACAATAGTAGCAACGGCCATGATGACTACGACGAAGCCTTT
GGCCACTTCGGAGCAACACAGGAGGTCATTGAACTGGTGTCGCTGCTGGC
ATCTCTGTTTCGCTTAGGATCACCAACCTCCCAGGTGCAGATACGGCGAT
ATACCGATGCCTGTTCCCCTCCTCTCTCACCATCGTCGACGACCAACCTC
GTTGCCAAGGTTTTTGACGTAATCCTCCGCTGCAAAAGAATCAATTCACA
AGGATGTCCTCCGAAAAACCGCTGCGTCCTCCCCCTACCGGAAATAACTT
CTGACATCTCCCTACGACCATCCTCATACGTTTCCATCTCCGATGTACCC
AGCACTGGTGTTTGCCGCAAAACTCTCGTTTGCCCTCACCTACTTTCAAC
GTTTTGCGCCGTCGCTTGGAATCGACACTCTTCCTCCTTATTCTTGTCGT
TTCCCACTGCCGTCGCCTTAGCCGTCTCTCTACTGTGGTCGCTGTTGGTG
GTGGCGGTGATGTTGGTGGTGTTGGTGTTGGTGTCGCTCAGAGGTGTTAG
ACATGATGACGATCTTGTTGTTGACACTGTTGTTGTTTTTCTTCCTGTCG
ATAGTGTTAGTAGTGAGGACGTTGTTGTCGTTGTTGTTGATTCTATGGAT
GGTGACGTAACTGTTGTTGTTAGCGGTGGTCGTGTTGTTGAACGTAGAGG
TGGTGGTGTTGGCGTGGTAGGATTGTTACTGTTGAATACTTGCCGTTGGC
ATCTAAAACTCATATTTTTCACTTGCTTGCTTTCATCGTGTGTACAAGCT
TCTAGCCTGTGATCCCCCCCGAGTGGCACACTATCGTTTACTGTTCTCGT
TCTCCTCAGCTGCCGGCGCAGGTTACAATGGCAGGAGGCGAGAAAGAAAG
TCAATCTCAGCTATCACCAGTGCCATCCTTGGCAGCAGCAGCAGCAGGAG
CAGGAGTTGATGGGACATCAATTACTGGTAAATGCCTACAATATATGCAT
GTGTATGTGGCCGCTCAAGCGTTTTTCTCTCGTGTCGTATGATACAGGGA
CGGTGCTGAAAAGGAGGCAAGCTTGCATCTGTGACTATGGGTTAAATAGA
TGTATGCGAACATGAGAAAAGTAATGATAATTTATTAACCCGAAGGTGTT
CACAAGTGAATGGAACGCGTGTCGATTGCTCGTGAACTGCGAAGATGCAG
GAAAAAGCATTTGATGAGCCGACGTCGAGAACCTCACCCCCAGAGGTTCT
TGGGCCTACGCATCATGTTGCCCGACGAAAATGCGATAGTCTTGTACACA
ACAGTTGATTTCAAAGGTCGGTCCCGTATCCATTCCAACTTGGAAATACA
CATACATACTTTCGAACGATTCAGATCCGCACTGAAGGAGAAAAGAGGGT
TCGACATAAAATATTTCTACTCTTGGTCGGAAGCATATCTAGTTGCGGTG
AAAAACAATGAATCCGGCCCGCAGGGTACATCCGTTTATACTCACAGTTC
TATTGCAGCAATACCATGCAGGACCCAGCCAGCGGCAAATAACCACTTAA
TTTATTTTTGTCATTTTTGTCCACTCGGGTGTCTCTTCGATAGTCCTGCC
GCCGAAGACGAGGCAGCGTTTATCGATGAGGTCGTCTTTTTTTCGATTCG
GGTGCCGATTTTACAGTGATGTTACCGATATGAAGTTTCACCGATTGAAC
GAAGGATTCAACCAGCATCATTGACCCACGTCTTGATTTTTGTTTTTAAT
CTTGTGTCGATTCGAGTGCCCTTGACAGGGCTGCCCCCTACGCAAGCTGA
GGTGGAAGACGCGCTGGCAGCCGGACAGTGCACAGCCCTCTTTCGGCGGG
GGTTTTCGACCGATATGCCGCACTCAACACTGCTACCTCTGCCGCAGTAT
TGGTCTCGTGGTTCTTTTTTCGGCGGTGCAACAAGGGGGAAACCCGGCGG
AAGGGGACAAGGACCAGGAAACGGCCAAGCCGCTGCCGACCACCACCTGC
CTACACCAACCCAAAACAGGCACGTTCCTTATACTATCGAGAATCATTGT
CACACCAACCCCAACAACAACGAACGAGAGTCACGCCCACGAGAGCGGGA
ATCATGGCCAAATCCAGCGCTGCCTCAAGCTCTACCGCACGAAAGCAGCG
GCGGTCGGCGAACGGCCACCAACACGCCCCAACTGGTGGTAGCGGCCCCC
AGGTCCGCGGCAACACTACCGTTATCTTCTGGGCGCCAGAAGCTCGCCGG
CGCGCCACAAGAAAGTGAAACCTCATTGACCGCTGGTCTAGAGCGTATGC
ACCGGCAATTCTCGGCCTTTCATGTTCATTCCACGCCCGATAAAGCCCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig802:25344..29143-

>mRNA_P-littoralis_Contig802.6.1 ID=mRNA_P-littoralis_Contig802.6.1|Name=mRNA_P-littoralis_Contig802.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1521bp|location=Sequence derived from alignment at P-littoralis_Contig802:25344..29143- (Pylaiella littoralis U1_48)
CAGCGTCCGAGATCTTTCCAGGAGCCTTCGAGAGACTCGTCCGGGGTGAT
GAAGATGTTGCGAAACGTTTCCGCTAGTGTTCACCAACGGGTCTCGCAAC
TAAAGAATTCGTTGATTCCGTCGGGAAAAGAGAGGCTTCACAGCTGGAAC
GAGGCCAGGGAAATATCGATAGTGATCGCTCGATCCCTTGTGGAGTTTCC
GCTTTCCGAAGCAGCGGCTCAGGAAGGTACTGCGGCCGCCATCGGTTGTC
ATCCACCGCAAATCCCGGCGCAACTGAAGGCGGCGGGCTCAAGAGGGGTG
TCATTCATGCGTCAGCTGGCTACTGGCCGTCCAACCTTCAGGGGCCCTAA
AGGTGCAACAGGGAGGACCCACCATTTGACGAGCGCAGCGGTAGAAGCAA
GAGGCGACGTTGGGAAAATCTCTGTGGATGGTGCAGTCTACGACAGAGAC
AACAACAGCAGCAACAACTACAACAGGGGAAAGAGTAGGTACGGTGGCAA
TACACGGAGCAGCAACAGCGATGGACCTAGGTCATCTACTGCGCCGGGGG
ATCGCTACGACGGCGATTCGTCATGGGTCTCAGGGGACGAGATTCTGAGA
ACCCTCGGGGGGGGTTATTTGGCGGTAACAGCGCTCTGTACGCTGAGCCG
GGCCGTTGCATTGCAGGGAATGATGAAACAGGCCGCTGATGCCTCAAAAG
TCGCCCCGAGCAGTAACAACAATAGTAGCAACGGCCATGATGACTACGAC
GAAGCCTTTGGCCACTTCGGAGCAACACAGGAGGTCATTGAACTGGTGTC
GCTGCTGGCATCTCTGTTTCGCTTAGGATCACCAACCTCCCAGGTTACAA
TGGCAGGAGGCGAGAAAGAAAGTCAATCTCAGCTATCACCAGTGCCATCC
TTGGCAGCAGCAGCAGCAGGAGCAGGAGTTGATGGGACATCAATTACTGG
GCTGCCCCCTACGCAAGCTGAGGTGGAAGACGCGCTGGCAGCCGGACAGT
GCACAGCCCTCTTTCGGCGGGGGTTTTCGACCGATATGCCGCACTCAACA
CTGCTACCTCTGCCGCAGTATTGGTCTCGTGGTTCTTTTTTCGGCGGTGC
AACAAGGGGGAAACCCGGCGGAAGGGGACAAGGACCAGGAAACGGCCAAG
CCGCTGCCGACCACCACCTGCCTACACCAACCCAAAACAGGCACGTTCCT
TATACTATCGAGAATCATTGTCACACCAACCCCAACAACAACGAACGAGA
GTCACGCCCACGAGAGCGGGAATCATGGCCAAATCCAGCGCTGCCTCAAG
CTCTACCGCACGAAAGCAGCGGCGGTCGGCGAACGGCCACCAACACGCCC
CAACTGGTGGTAGCGGCCCCCAGGTCCGCGGCAACACTACCGTTATCTTC
TGGGCGCCAGAAGCTCGCCGGCGCGCCACAAGAAAGTGAAACCTCATTGA
CCGCTGGTCTAGAGCGTATGCACCGGCAATTCTCGGCCTTTCATGTTCAT
TCCACGCCCGATAAAGCCCCC
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