mRNA_P-littoralis_Contig80.57.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig80.57.2
Unique NamemRNA_P-littoralis_Contig80.57.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig80.57.2 vs. uniprot
Match: D8LFM0_ECTSI (Peptidyl prolyl cis/trans isomerase like n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFM0_ECTSI)

HSP 1 Score: 467 bits (1202), Expect = 2.310e-160
Identity = 244/308 (79.22%), Postives = 262/308 (85.06%), Query Frame = 3 
Query:  153 MRFRCSFSRQQAAVALIVGRRFASAFIAAPRGGLLS----VPAAGEQLHHTARLG------VSPATSLTGRRSPRRPGCGRALQMSSTTGAVSGEEICRAAHILCADAEAAEAALTRIKSGEQFGDIAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELVKSGAGDAEGKYQFVDVREEEELGKAKLDGFINLPLSKFEEWSAKLSGEDAILDAEKDTVVMCHHGMRSNQMAQHLATKSGFKKVWNVEGGLHAYASQVDTSVGIY 1046
            MRF CS SRQQAAVALIVGRRFASAF+AAPRGG+L+    +P   +  +  A         V  A +  G     RP  GR L MSS T AV+GEEICRAAH+LCAD +AAEAALTRIKSGEQFGD+A DMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILEL KSGAGD + KYQFVDVREEEELGKAKLDGF+NLPLSKFEEWS KLSGE AILDAEKDTV+MCHHGMRSNQMAQHLATK+GFK+VWNVEGGLHAYAS VD+SVG+Y
Sbjct:    1 MRFSCSLSRQQAAVALIVGRRFASAFVAAPRGGVLAGSTALPMRAQSCNSLAGSNRRWIHAVPAAGTSLGLPQQPRPCTGRPLMMSSATDAVTGEEICRAAHVLCADEDAAEAALTRIKSGEQFGDVATDMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELAKSGAGDVDSKYQFVDVREEEELGKAKLDGFVNLPLSKFEEWSDKLSGEGAILDAEKDTVIMCHHGMRSNQMAQHLATKAGFKRVWNVEGGLHAYASHVDSSVGVY 308
[Close]
BLAST of mRNA_P-littoralis_Contig80.57.2 vs. uniprot
Match: M2Y4U7_GALSU (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y4U7_GALSU)

HSP 1 Score: 192 bits (489), Expect = 1.090e-54
Identity = 102/223 (45.74%), Postives = 146/223 (65.47%), Query Frame = 3 
Query:  381 STTGAVSGEEICRAAHILCADAEAAEAALTRIKSGEQFGDIAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELVKSGAGDAEGKYQFVDVREEEELGKAKLDGFINLPLSKFEEWSAKL-SGEDAILDAEKDTVVMCHHGMRSNQMAQHLATKSGFKKVWNVEGGLHAYASQVDTSVGIY 1046
            ST        I RA HIL      A+  L ++K+G+ F ++A  +S CPSK++GG+LGWF++G MVA FE ACF+  P  ++K+QT++GWHV+ +  +AI P  + VE+  +I     S         Q VDVRE+ EL  A+LD F +LPL ++E+W+ ++ SGE  +LD EK+T+VMCHHG+RS QM  +LA + GF KV N+ GG+ AYA QVD S+G+Y
Sbjct:    2 STLEPTGSHNIVRARHILVETEGMADTLLEQLKNGQHFAELAKAVSRCPSKERGGELGWFRRGTMVASFEDACFQGKPDQLIKIQTEYGWHVIQVQGQAIEPGSITVEDFAKIYPHQIS-------HVQLVDVREQNELELARLDHFFHLPLGEYEKWAEQVESGE--LLDKEKETIVMCHHGIRSAQMCSYLA-QQGFLKVRNLIGGIDAYAHQVDPSIGVY 214
[Close]
BLAST of mRNA_P-littoralis_Contig80.57.2 vs. uniprot
Match: A0A7S2Y1W3_9STRA (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1W3_9STRA)

HSP 1 Score: 182 bits (462), Expect = 4.520e-50
Identity = 97/209 (46.41%), Postives = 133/209 (63.64%), Query Frame = 3 
Query:  417 RAAHILCADAEAAEAALTRIKSGEQFGDIAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELVKSGAGDAEGKYQFVDVREEEEL--GKAKLD-GFINLPLSKFEEWSAKLSGEDAILDAEKDTVVMCHHGMRSNQMAQHLATKSGFKKVWNVEGGLHAYASQVDTS 1034
            +A+HIL    E A+  L R+  GE F  +A+D S CPSK +GGDLGWF KGQMV EFE  CF    G +  V+TQFGWHV+ +  +   P+ + V+EL E+LE  + G      + Q +DVRE +EL  GK   D GFINLPLS+F+ W  K+   D +LD  K T+ +CHHG+RS Q    LA+++GF+ V NV GG++ Y+ ++D S
Sbjct:   64 KASHILVKSEETAKMLLERVNDGEDFAALASDNSDCPSKAQGGDLGWFGKGQMVPEFENVCFTGVKGDVSLVETQFGWHVIKIEGQGFPPKDIDVKELAEVLETTERG------EVQLIDVREADELEGGKNLTDKGFINLPLSEFQTWGRKVVDGD-LLDKSKRTICLCHHGIRSRQAGNFLASQAGFEDVANVVGGINNYSDKIDPS 265
[Close]
BLAST of mRNA_P-littoralis_Contig80.57.2 vs. uniprot
Match: A0A4D9D039_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D039_9STRA)

HSP 1 Score: 181 bits (458), Expect = 4.810e-50
Identity = 98/215 (45.58%), Postives = 138/215 (64.19%), Query Frame = 3 
Query:  417 RAAHILCADAEAAEAALTRIKSGEQFGDIAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELVKSGAGDAEGK--YQFVDVREEEELGKAKLDG--FINLPLSKFEEWSAK-LSGEDAILDAEKDTVVMCHHGMRSNQMAQHLATKSGFKKVWNVEGGLHAYASQVDTSVGIY 1046
            RAAHIL    E A+A +  +++G  F ++A   S CPS+ +GGDLGWF  GQMV  FE  CF N  G + KVQT+FG+H++ +  +A  P      +LG+++      AG  EG+   Q +DVRE +EL +A++ G  F+NLPLS+F EW  K LSGE  +LD +K TVV+CHHG RS Q A  L +++GF +V+N+ GG+H YA  VD+ +  Y
Sbjct:   16 RAAHILVKSEEEADALMAVLENGADFAELAMVESDCPSRKQGGDLGWFGPGQMVPAFEEVCFNNPVGALAKVQTEFGYHIIQVNGKATAPGDWHPSQLGDLV------AGGQEGREEVQLIDVREPDELLRAEIKGAGFLNLPLSQFAEWRPKILSGE--LLDKDKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPTY 222
[Close]
BLAST of mRNA_P-littoralis_Contig80.57.2 vs. uniprot
Match: I2CR14_NANGC (Peptidyl prolyl cis trans isomerase like protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR14_NANGC)

HSP 1 Score: 181 bits (458), Expect = 6.300e-49
Identity = 109/258 (42.25%), Postives = 155/258 (60.08%), Query Frame = 3 
Query:  288 HTARLGVSPATSLTGRRSPRRPGCGRALQMSSTTGAVSGEEICRAAHILCADAEAAEAALTRIKSGEQFGDIAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELVKSGAGDAEGK--YQFVDVREEEELGKAKLDG--FINLPLSKFEEWSAK-LSGEDAILDAEKDTVVMCHHGMRSNQMAQHLATKSGFKKVWNVEGGLHAYASQVDTSVGIY 1046
            HT R   +  TS+   R+  R    R +  +STT      ++ RAAHIL    E A+A +  +++G  F ++A   S CPS+ +GGDLGWF  GQMV  FE  CF N  G + KVQT+FG+H++ +  +A  P      +LG+++      AG  EG+   Q +DVRE +EL +A++ G  F+NLPLS+F EW  K LSGE  +LD  K TVV+CHHG RS Q A  L +++GF +V+N+ GG+H YA  VD+ +  Y
Sbjct:   65 HTYRPATAGGTSVE--RTSWRSTAIRFMASTSTTPPDPRVKV-RAAHILVKSEEEADALMAVLENGADFAELAMVESDCPSRKQGGDLGWFGPGQMVPAFEEVCFNNPVGALAKVQTEFGYHIIQVNGKATAPGDWHPSQLGDLV------AGGQEGREEVQLIDVREPDELLRAEIKGAGFLNLPLSQFAEWRPKILSGE--LLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPTY 311
[Close]
BLAST of mRNA_P-littoralis_Contig80.57.2 vs. uniprot
Match: A0A7S2JMB7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Cyanoptyche gloeocystis TaxID=77922 RepID=A0A7S2JMB7_9EUKA)

HSP 1 Score: 177 bits (449), Expect = 7.740e-48
Identity = 103/222 (46.40%), Postives = 142/222 (63.96%), Query Frame = 3 
Query:  372 QMSSTTGAVSGEEICRAAHILCADAEAAEAALTRIKSGEQFGDIAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFE-NDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELVKSGAGDAEGKYQFVDVREEEELGKAKLDGFINLPLSKFEEWSAKLSGEDAILDAEKDTVVMCHHGMRSNQMAQHLATKSGFKKVWNVEGGLHAYASQVDTS 1034
            Q + T  A +  +  RA+HIL +  E A+  L R+  GE F  +A + SSCPS  KGGDLGWFK+G MV EFE A FE ++   +VKV+TQFGWH++ +  +      ++ EE  +IL+      GD   + Q VDVREE+EL  A L GFINLPL++ E+W+ ++ G   +LD  K+T+VMCHHGMRS QM   L  + GF KV N+ GG++AY++ VD S
Sbjct:   81 QRAMTARAEASIDSARASHILVSGEEQADEILARLNKGEDFAKLARENSSCPSGMKGGDLGWFKRGMMVPEFEQASFEASNLNKVVKVKTQFGWHLLTVTGQRAGIGAVSAEEFKKILD----ERGD---QVQLVDVREEDELRLASLPGFINLPLTQAEKWAPEVEG-GVLLDKSKETIVMCHHGMRSAQMCGFLE-RVGFDKVKNLTGGINAYSNNVDPS 293
[Close]
BLAST of mRNA_P-littoralis_Contig80.57.2 vs. uniprot
Match: A0A8J5X8B1_DIALT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X8B1_DIALT)

HSP 1 Score: 170 bits (430), Expect = 2.350e-45
Identity = 98/256 (38.28%), Postives = 154/256 (60.16%), Query Frame = 3 
Query:  291 TARLGVSPATSLTGRRSPRRPGCGRALQMSSTTGAV--SGEEICRAAHILCADAEAAEAALTRIKSGEQFGDIAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELVKSGAGDAEGKYQFVDVREEEELGKAKLDG--FINLPLSKFEEWSAKLSGEDAILDAEKDTVVMCHHGMRSNQMAQHLATKSGFKKVWNVEGGLHAYASQVDTSVGIY 1046
            TAR+   PA+ L            R+  ++S  GA   +     RAAHIL    E A+A   +++ G  FGDIA  +S C S+ +GG+LGWF  G M  +FE ACF+  PG++VKVQ++FGWH++ +      P  ++  EL   ++     A D  G  QFVDVR  +E+ +A + G  ++NLP +++ EW  K++  + +L+ EK+T+V+CHHGMRS++ AQ +  ++GF+ V ++ GG+ AYA++ D +VG Y
Sbjct:   22 TARVASRPASRLA-----------RSAVLASAQGATETARPNQARAAHILVDTEELADAIRAQVEGGMSFGDIAKTVSLCTSRSRGGNLGWFSAGMMTPDFERACFDATPGSLVKVQSEFGWHLIHVEETRAAPTDVSPAELKRRID-----ANDVHG-VQFVDVRSADEVSRASIPGVQWVNLPFNEYSEWGDKVAAGE-LLEHEKETIVICHHGMRSSRTAQFML-QNGFRSVVSLLGGIDAYAAEADPAVGRY 258
[Close]
BLAST of mRNA_P-littoralis_Contig80.57.2 vs. uniprot
Match: A0A2V3IYG3_9FLOR (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYG3_9FLOR)

HSP 1 Score: 163 bits (413), Expect = 1.120e-43
Identity = 87/211 (41.23%), Postives = 127/211 (60.19%), Query Frame = 3 
Query:  417 RAAHILCADAEAAEAALTRIKSGE-QFGDIAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELVKSGAGDAEGKYQFVDVREEEELGKAKLDGFINLPLSKFEEWSAKLSGEDAILDAEKDTVVMCHHGMRSNQMAQHLATKSGFKKVWNVEGGLHAYASQVDTSVGIY 1046
            RA HIL    E  +A   +++ G+  F D+A  +S+CPSKD+GGDLGWFK+  MV EFE A F N PG++VKV+++FGWH++ +    +  + + V+ELG      K G  D     Q +D RE  EL  + L  F+NLP+ ++  W+ +       L+ +K+T+VMCHHG+RS      LA + GF  V N+ GG+ AYA ++D SV  Y
Sbjct:    3 RAKHILVDSEEMIDAIKQQLEDGKGNFADLAKLVSTCPSKDRGGDLGWFKRNIMVKEFEEAAFSNPPGSVVKVKSEFGWHLIQVEEHGMAAKSITVDELGR--RFGKDGTDDPLS-VQLIDCRETSELELSSLPNFLNLPMGEYARWADQFENGKLSLEKDKETIVMCHHGIRSANFCSFLA-QHGFTNVRNLIGGIDAYAKKIDNSVPQY 209
[Close]
BLAST of mRNA_P-littoralis_Contig80.57.2 vs. uniprot
Match: S8D8K8_9LAMI (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8D8K8_9LAMI)

HSP 1 Score: 162 bits (410), Expect = 4.330e-43
Identity = 93/194 (47.94%), Postives = 122/194 (62.89%), Query Frame = 3 
Query:  471 RIKSGEQFGDIAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRA--ILPRQMAVEELGEILELVKSGAGDAEGKYQFVDVREEEELGKAKLDGFINLPLSKFEEWSAKLSGEDAILDAEKDTVVMCHHGMRSNQMAQHLATKSGFKKVWNVEGGLHAYASQVDTSVGIY 1046
            R   GE  GD+A + S CPSKD GG LGW + GQMV EFE A F      IV  +T+FGWH++ +LS    +L +Q+   EL E ++   S   +A    Q +DVRE +E+ KA L GF  LPL +F +W   +S E    D EKDT V+CHHGMRS Q+AQ L T+ GFK+V+NV GG+H YA +VD S+ +Y
Sbjct:   37 RASEGEDLGDLAVEYSICPSKDDGGMLGWVRTGQMVPEFEEAAFNAPLNKIVSCKTKFGWHLLQVLSERDQLLLKQIQPSELHERMQ-DPSFFNEA----QLIDVREPDEVAKAALPGFKVLPLRQFAKWGPVISSE---FDPEKDTYVLCHHGMRSLQVAQWLQTQ-GFKRVFNVSGGIHEYAVKVDESIPVY 221
[Close]
BLAST of mRNA_P-littoralis_Contig80.57.2 vs. uniprot
Match: A0A6P8E6A2_PUNGR (rhodanese-like/PpiC domain-containing protein 12, chloroplastic n=2 Tax=Punica granatum TaxID=22663 RepID=A0A6P8E6A2_PUNGR)

HSP 1 Score: 162 bits (411), Expect = 3.360e-42
Identity = 106/279 (37.99%), Postives = 157/279 (56.27%), Query Frame = 3 
Query:  231 IAAPRGGLLSVPAAGEQLHHTARLGVSPATSLTG-----RRSPRRPGCGRALQMSSTTGAVSGEEICRAAHILCA--DAEAAEAALTRIKSGEQFGDIAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELVKSGAGDAEGKYQFVDVREEEELGKAKLDGFINLPLSKFEEWSAKLSGEDAILDAEKDTVVMCHHGMRSNQMAQHLATKSGFKKVWNVEGGLHAYASQVDTSVGIY 1046
            I++P  GLLS       L +++ L   P++ L G     R  PR PG   +    S++G+  G       H+L    D +       ++ +GE   D+A + S CPSK++GG LGW +KGQMV EFE A F      +V+ +T+FGWH++ +LS       + ++   E L++        E + Q +DVRE EE+  A L GF  LPL +F  W  +++ +   LD++KDT VMCHHGMRS Q+A+ L T+ GFK+V+N+ GG+HAYA + D SV  Y
Sbjct:   40 ISSPLRGLLSKT----HLPNSSYLPTPPSSKLVGPPMSARTRPRGPGLSASFSSYSSSGSPGGGREILVQHLLVKEDDQKLLLELQQKVSAGEDLSDLAVEYSICPSKEEGGMLGWVRKGQMVPEFEEAAFGAPMNKVVRCKTKFGWHLLQVLSER--EESVLLDIQPEELQVKMQDPKFVE-EAQLIDVREPEEVALASLPGFQVLPLRQFGNWGPEITTK---LDSDKDTYVMCHHGMRSLQVAKWLQTQ-GFKRVYNLSGGIHAYAVKADPSVPTY 307
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig80.57.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFM0_ECTSI2.310e-16079.22Peptidyl prolyl cis/trans isomerase like n=2 Tax=E... [more]
M2Y4U7_GALSU1.090e-5445.74Peptidyl-prolyl cis-trans isomerase n=1 Tax=Galdie... [more]
A0A7S2Y1W3_9STRA4.520e-5046.41Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A4D9D039_9STRA4.810e-5045.58Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannoc... [more]
I2CR14_NANGC6.300e-4942.25Peptidyl prolyl cis trans isomerase like protein n... [more]
A0A7S2JMB7_9EUKA7.740e-4846.40Hypothetical protein (Fragment) n=1 Tax=Cyanoptych... [more]
A0A8J5X8B1_DIALT2.350e-4538.28Peptidyl-prolyl cis-trans isomerase n=1 Tax=Diacro... [more]
A0A2V3IYG3_9FLOR1.120e-4341.23Peptidyl-prolyl cis-trans isomerase n=1 Tax=Gracil... [more]
S8D8K8_9LAMI4.330e-4347.94Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A6P8E6A2_PUNGR3.360e-4237.99rhodanese-like/PpiC domain-containing protein 12, ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig80contigP-littoralis_Contig80:413064..418590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFM0
PFAMsRhodanese,Rotamase,Rotamase_3
Model size1613
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009735,GO:0010033,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896
Exons6
Evalue2.45e-164
EggNOG OGsCOG0476@1|root,KOG2017@2759|Eukaryota
Ec32 ortholog descriptionpeptidyl prolyl cis/trans isomerase like
Ec32 orthologEc-04_001720.1
Descriptionthiosulfate sulfurtransferase activity
Cds size1011
COG categoryH
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig80.57.2prot_P-littoralis_Contig80.57.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig80 413628..418552 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791648.1810427-UTR-P-littoralis_Contig80:413063..4136271680791648.1810427-UTR-P-littoralis_Contig80:413063..413627Pylaiella littoralis U1_48UTRP-littoralis_Contig80 413064..413627 -
1680791648.2783294-UTR-P-littoralis_Contig80:418552..4185901680791648.2783294-UTR-P-littoralis_Contig80:418552..418590Pylaiella littoralis U1_48UTRP-littoralis_Contig80 418553..418590 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791648.198195-CDS-P-littoralis_Contig80:413627..4137451680791648.198195-CDS-P-littoralis_Contig80:413627..413745Pylaiella littoralis U1_48CDSP-littoralis_Contig80 413628..413745 -
1680791648.2125156-CDS-P-littoralis_Contig80:414096..4142111680791648.2125156-CDS-P-littoralis_Contig80:414096..414211Pylaiella littoralis U1_48CDSP-littoralis_Contig80 414097..414211 -
1680791648.2239609-CDS-P-littoralis_Contig80:415399..4155591680791648.2239609-CDS-P-littoralis_Contig80:415399..415559Pylaiella littoralis U1_48CDSP-littoralis_Contig80 415400..415559 -
1680791648.2386434-CDS-P-littoralis_Contig80:416213..4164511680791648.2386434-CDS-P-littoralis_Contig80:416213..416451Pylaiella littoralis U1_48CDSP-littoralis_Contig80 416214..416451 -
1680791648.2531524-CDS-P-littoralis_Contig80:417199..4173571680791648.2531524-CDS-P-littoralis_Contig80:417199..417357Pylaiella littoralis U1_48CDSP-littoralis_Contig80 417200..417357 -
1680791648.2657568-CDS-P-littoralis_Contig80:418330..4185521680791648.2657568-CDS-P-littoralis_Contig80:418330..418552Pylaiella littoralis U1_48CDSP-littoralis_Contig80 418331..418552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig80.57.2

>prot_P-littoralis_Contig80.57.2 ID=prot_P-littoralis_Contig80.57.2|Name=mRNA_P-littoralis_Contig80.57.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=337bp
MVPLKNAARAVHAVQGYILSYYCCLTKYIITHTRHDGNMRFRCSFSRQQA
AVALIVGRRFASAFIAAPRGGLLSVPAAGEQLHHTARLGVSPATSLTGRR
SPRRPGCGRALQMSSTTGAVSGEEICRAAHILCADAEAAEAALTRIKSGE
QFGDIAADMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQT
QFGWHVVALLSRAILPRQMAVEELGEILELVKSGAGDAEGKYQFVDVREE
EELGKAKLDGFINLPLSKFEEWSAKLSGEDAILDAEKDTVVMCHHGMRSN
QMAQHLATKSGFKKVWNVEGGLHAYASQVDTSVGIY*
back to top

mRNA from alignment at P-littoralis_Contig80:413064..418590-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig80.57.2 ID=mRNA_P-littoralis_Contig80.57.2|Name=mRNA_P-littoralis_Contig80.57.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5527bp|location=Sequence derived from alignment at P-littoralis_Contig80:413064..418590- (Pylaiella littoralis U1_48)
AGAATCGAGACTTTTCTTGCCACCACCCTGTATCATATATGGTGCCCCTA
AAAAACGCGGCGCGAGCGGTGCATGCAGTCCAGGGCTATATACTCTCATA
CTACTGCTGTCTTACAAAGTACATCATCACCCACACAAGACACGACGGTA
ACATGCGCTTCAGGTGCTCCTTCTCTCGCCAGCAGGCCGCTGTGGCCTTG
ATCGTCGGCAGGCGCTTCGCCAGCGCCTTTATTGCCGCTCCTCGAGGCGG
CTTGCTGTCCAGCAGTACTGCTGCTCTTCCGATCGGCGCAACGCCCTGCG
GCAGGTAAGACTGCTGTGACTGCTGACTGCTGTATGCATGATGCCTGCTG
GCACGCAGCATGCAGGTGTCGCACGTAGAGAGCACTCAGCGTTCACCAAC
AGCAGTTGCGATTGCGGTGTTGTGTGCAAGTTCAGTTGCTCTCGGGAGTG
GTCTGTCCGTGGTGTCGTATATTTTGAGATCTCGAGAGGTTTGTTTGCCT
CTCGGAATCATGAGCAGCGGTGTTGCACTAGACTACAACCTGTTGCTTGT
CGCATCACACCACACCACACCACACCGTGGGGTTCCTGCGCTTGCGAGTC
TGGCGTTCTGCTTCTCATGAGCCAGTCAGCCTGGTGTAGCATTTGCAGAC
GGAGATACTGTATCAGCAAGTAGTTACCTTTCCGGTTCACATACTAACTG
CTCATGTGTGCAGGCACCAGGTATGATCTATGCCACAGCTATGATAAACT
ATGTTTACGGCAGCATCATCCCTCACTTGCCATCTGTGCTCTCCTTCCGC
CACTACTCCTACTGCTGTACAGCAGCATGACGAAAAAAAAATCCTGCGGT
GTGGTGCCGACCTTCCTCAAGCTGTGTGAACCGGGCTGGTTCACCCAACA
TATACCGAAAGGTGTAGACTGGCGTCCAGAATATCTACGAGTATGGGGTG
ACAGCACACAAATACAAACACACGGTCTTGGATTTAGAGGGGAGGGAGCT
TATCGAGCCAACTTATTCATACACATTTTATGATGCTTTGTATCATGTCC
TTCCTTCTGGTACGCTCCCTGGGCAGTAACAACCTTAACCTTTTGCGCCC
CTCTCTTTCTTTCCTTGTTCCCCCACCCACACCCGTCGTCTACGCACAAA
AACAATACAAAACGGCCCAACTGCTGCTGTCAAACAAACTTAAAACTTCC
CACAGCCTCAACAACAGACGATGGCTCCACGCCGTGCCCGCGGCCGGGGA
GCAGCTCCACCACACGGCACGTCTCGGCGTCTCCCCCGCCACCTCCCTCA
CTGGCCGGCGCTCGCCGCGGCGACCGGGCTGCGGCCGGGCTCTACAGATG
TCCTCCACAACCGGGGCGGTCTCTGGCGAGGAGATTTGCAGGTAAGTCAC
TTTGCAGTGTATCATACCGTACCCAATCGGCAGCGTACCGTAAGCAATCG
GGTGGGTAGGCCTGAGGATTGTCGTGGGTTGTATGACATGTTGGTGCCTC
CGGGCGGAGTTTCCTCTTCCCGACACGAACTACTTTTTTAACGCTTGCGC
GCGATGGCTAGTGGTATCACTCACCTCCAACACCAACCATGGCCCGTTGG
GTTGACTTGCCTTTTTGTACTGTTGTTGTAGGTTCCCTTTTTTTTCTGCG
GGGCAGTTAGTTTTCCTCTTCACCTGTGAGGTCTCTTGCTCATGCGTGCA
CACGGTTGTTGCGATGTCACCAACAACCCTGTGCCATAGGGTTGGTTTTC
CTCTTGCCTGTGATTTATCGTGCTTGTGCGTGCACACAAGGTGGTTGCGA
TGTCACAAACAACTCTCCTGTGGTAAAGGGTTGGTTTTTCTCTCCCCTGT
GATTTCTCTTGTTTATGCCTGCACACACGGTGGTTGCGATCTCTTCAACA
ACCCTCCTGTGTCATAGGGTTGTTTTTCCTCTTGCCTGTGATTTATCGTG
CTTGTGCGTGCGTACACACAAGGTGGTTTCGATGTCACAAACAACCCCCC
TGTGTCATAGAGTTGGTTTTACCCTTCCTTGTCACGTCCCGCGTTTGTGC
GTGTTCACACTTGGTTGCATGTCACTAACAACCCCTTTGTGACATCATAG
AGTCGAACCTTCAACTTGTGGTATTTATGTACTCTGCAGGGCGGCGCACA
TCCTATGCGCAGACGCCGAGGCCGCCGAAGCCGCCCTGACGCGAATCAAG
AGCGGCGAGCAATTCGGGGACATCGCTGCGGACATGAGCTCCTGCCCTTC
GAAGGACAAGGGCGGCGACCTGGGGTGGTTCAAGAAGGGTCAGATGGTCG
CGGAGTTCGAGGCGGCGTGCTTCGAGAACGATCCCGGAACAATCGTGAAA
GTTCAGACGCAGTTCGGGTGGCACGTGGTGAGCAATGATGGCAAGGACGA
AATCACCACGTGTACGACTCTTTGCTTGTTTGTTTGTTTGTTTTGTTTTT
TAGTTTTTTCTGTACATCGTTCTTGTAGCAGCGACCCTAAGCCATCTATT
TACCTTTTGGTTGACGAAGCTCCAGCATTGGAGGGCTCGTCAACGGTACC
ATATGGTTAAAATTAGCAGGACACAAGAACGTTTTTGGTTTGTGAACACG
GTGATTCTGTAGAGAGTGTCGGAGATCTTCTGGGTTTTTCATGCGGCTAT
CATATGCGCTCCACGACGGAGATGGCGGCGCCATTTTTAAGACTAGCCAA
GGGAGTCCCGTGATATATGCCGTAGCATGCGCGGCATGCGCCCTCGTGAG
AGAAGCACCACAGCGGTTCTCGTCGCCGGTGTAATACTTCGTAGCCCGAT
AAAACGCTCCACGCTTTCTGCTTTGTGAATATGGAGCTTTCAACAATACT
TACCGTTCAAAGTGTATTCCACGCATACCAATACCGGTATATCTGATCTG
ATCTGATCTGATCTGATCTGACCTGATCTAAGCTGATCCGATGTGAGGTG
GTATCTATCTCTACTTGACGGGATTCCCCACGCCTTGTCGTCGTTTTTTT
GCTTTGTTTCGTGCAACGACGAAAAAACAAGGTGGCGCTGCTCTCGAGGG
CTATCCTCCCGCGACAGATGGCTGTGGAGGAGCTGGGAGAGATCCTGGAG
CTTGTGAAGAGTGGGGCGGGTGACGCGGAGGGCAAGTACCAGTTCGTCGA
CGTCCGGGAAGAAGAAGAACTAGGAAAGGCCAAGCTTGACGGTGAGCTTG
GTGAATGCCGCGGGCCTAGCTATATAACACCGGCCCCAATATGCTCACTC
TTTTTTGCCGAAGCATGCACAAAAGGCGCGCACGGACAGGCTCTTGTTTG
TGCCGGCTGAGCAAAAAAGCGACGAAATTGTGAGAACGGAATGATGCTGG
ACCGAAAATCCACATCCGATTGGTTGACGGTTGGCTGACGGACATCTGCA
TGCGCGAAGCAAGTCACGGCCAAGACCAAAGCTGGTTGGGTGCGACGATG
TGTTGATGGATTAGTTTCGCGTGCTGAAAGCGATCAGCGGGCTGGTGACA
ATGCCGTTTTTAGTTTCGGGTGGATCAGGGAAGTAAAAACGGCAGTGTTT
CCAACCCACTGATATCTTAGTTCCGAGCCCGTCCGCATTCCACGGTCATC
GAGTTTGAAGGAATGTCCGCTTGGTTTTTGGTAATCTCTTTGAGCGTGGC
ATTAGTCCCGCCCTTGTTGCTGGAGTCTTGCACGTGTAAACGAAGTTTAT
ACAAAGCACATGTTTTGTACTTCGTAATAGTCAAGATATCATTAATCTAA
CTGTTCGCTGTAGCGTTACACGCACGTTTTGAAAATGTTCCAACAGTCCA
GAGGTCATCGAGCGGGAGCTCGATATAGTCCTACCCTCCTTGCCGGAGAG
TCGTGTGTGCATAAACGCGGTTTTGAACAGGCTTGAGTTCATCGAACAGG
GAACTCCATCCTGCTGTGACGTACGTAGTACCCTGTCGTCGCTCATGTAA
GGCCGATACATCCGACTCCGTTGGCCGGAGTTGTTGTTGTTGATTCTCAC
ATTAGCTCACTACCGCCGCAGTCTAGCCCGTGGTCACAAACCAGGCATAT
ATCGTGCTAGGAGGAAAAAAGAAAAAGAAAATAAATGGACTATGATCACC
CACAGTCAAATCAGTAGGGTACCGTTGGGGTATCATCTGTGGTGGCCAAG
TACAAAACGGAGTGCAAATACGTGTGTCAACGGTCTAGAAAGAATCGGAC
GGGAGCGTCACGCAGCCCCGGTCTAGCTGCGGGGGAGCGTCACTCCCGCA
CACCGCACGTGCACCTTTTGTGTCGTCCGGAGTCAACTTCAGCAGTAGTC
CAACGCGAGATCTGAGCCTGCCGCGGCCACGTGCTCCACGATTACTGCCG
TCGCTGGACTTGACCTGCTTGCCTCGAAGGGTTCATCAACCTGCCGCTTT
CCAAGTTCGAGGAATGGAGCGCCAAGCTTTCCGGAGAAGACGCCATCCTG
GACGCCGAGAAAGACACCGTCGTCATGTGCCACCACGGCATGAGGTAGGA
GGCGGGAGTACACATGTATGTTTTGTATGTGTGTGTTGTATGCGTGCGCG
TCCATCCAGCTCATAGGCTATTCTGCGTAGGGATGTTTTTGATCACAACG
TTTTTTTTGTTTTTCTTAAGCGAAGAAGAACCGGCCCGCTTCACCGGGGG
CACCGCATTTCTCTGTTCCAGTGCATGTGTGCGCGTGTTGTTTGTTTTTT
TGGTCACTTCATGCTGTGTTTTCTCTCGCCGCGCTCGCGCGTGAACCGTG
AGTGTTTTCACGCCGCGTTCACCCGCCCCTCACGCCTTGGTCCGCCAACG
CCCTGCTTTCGGGGGCGATGCTACCGCACACATCGCCACCAACAGGTCGA
ATCAAATGGCTCAGCATTTGGCAACAAAATCTGGCTTTAAGAAGGTCTGG
AACGTCGAGGGCGGGCTGCACGCCTACGCCAGCCAAGTAGACACTTCCGT
GGGGATTTACTGATCAATCGACGGCGCTGGGGCGATGATGGGGTTGGCTG
CACCTCCAGATCTGCAGGAGGAGACATTTGACCCAACGGTTTTAGATCGT
TCTGTGTCCCGCGGCTCCTTTGATTCCAATAATAATTAGTTGGGGTGGAG
AGGGAGGCAAGTTGTTTTGCTTCGGACCGTTATTTTCCCCGCGGCACGCT
GGAGGTTTATCAACCAAAGAAAATGTTTATCTTGCGGGAGAGGAGCTTTT
GTCTTGTCTAAAAAAAAAAAGTGCGTTGGCCTTCTCCCTGTGTGACACCC
CGGCTGATGAGCCCAATTTTTGTACCGAGAGGTGTAGACTATGATGACAT
CCATAATATATGGGGATGACACCACACACACGCATCAACCTCAGTGAGCT
AGCTGGGTCGTGTCATGATGCACGAGTTTTGTGGATCTTTTGAGAACGCG
TGTTCGGGAACGAAACACGGGAGTTGAGGTACACTTGACGTTTTTTCTGT
GAGAGAAGCTAACAGGTTTTTCTAGTCCTCCAGAGCTTCAGGTCCTCCAC
TAAACAATTTCACCCGTCCGTCCGTCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig80:413064..418590-

>mRNA_P-littoralis_Contig80.57.2 ID=mRNA_P-littoralis_Contig80.57.2|Name=mRNA_P-littoralis_Contig80.57.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1011bp|location=Sequence derived from alignment at P-littoralis_Contig80:413064..418590- (Pylaiella littoralis U1_48)
ATGGTGCCCCTAAAAAACGCGGCGCGAGCGGTGCATGCAGTCCAGGGCTA
TATACTCTCATACTACTGCTGTCTTACAAAGTACATCATCACCCACACAA
GACACGACGGTAACATGCGCTTCAGGTGCTCCTTCTCTCGCCAGCAGGCC
GCTGTGGCCTTGATCGTCGGCAGGCGCTTCGCCAGCGCCTTTATTGCCGC
TCCTCGAGGCGGCTTGCTGTCCGTGCCCGCGGCCGGGGAGCAGCTCCACC
ACACGGCACGTCTCGGCGTCTCCCCCGCCACCTCCCTCACTGGCCGGCGC
TCGCCGCGGCGACCGGGCTGCGGCCGGGCTCTACAGATGTCCTCCACAAC
CGGGGCGGTCTCTGGCGAGGAGATTTGCAGGGCGGCGCACATCCTATGCG
CAGACGCCGAGGCCGCCGAAGCCGCCCTGACGCGAATCAAGAGCGGCGAG
CAATTCGGGGACATCGCTGCGGACATGAGCTCCTGCCCTTCGAAGGACAA
GGGCGGCGACCTGGGGTGGTTCAAGAAGGGTCAGATGGTCGCGGAGTTCG
AGGCGGCGTGCTTCGAGAACGATCCCGGAACAATCGTGAAAGTTCAGACG
CAGTTCGGGTGGCACGTGGTGGCGCTGCTCTCGAGGGCTATCCTCCCGCG
ACAGATGGCTGTGGAGGAGCTGGGAGAGATCCTGGAGCTTGTGAAGAGTG
GGGCGGGTGACGCGGAGGGCAAGTACCAGTTCGTCGACGTCCGGGAAGAA
GAAGAACTAGGAAAGGCCAAGCTTGACGGGTTCATCAACCTGCCGCTTTC
CAAGTTCGAGGAATGGAGCGCCAAGCTTTCCGGAGAAGACGCCATCCTGG
ACGCCGAGAAAGACACCGTCGTCATGTGCCACCACGGCATGAGGTCGAAT
CAAATGGCTCAGCATTTGGCAACAAAATCTGGCTTTAAGAAGGTCTGGAA
CGTCGAGGGCGGGCTGCACGCCTACGCCAGCCAAGTAGACACTTCCGTGG
GGATTTACTGA
back to top