mRNA_P-littoralis_Contig80.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig80.30.1
Unique NamemRNA_P-littoralis_Contig80.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig80.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig80contigP-littoralis_Contig80:173626..174285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size642
Hectar predicted targeting categoryother localisation
Exons2
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791645.660171-UTR-P-littoralis_Contig80:173625..1739161680791645.660171-UTR-P-littoralis_Contig80:173625..173916Pylaiella littoralis U1_48UTRP-littoralis_Contig80 173626..173916 +
1680791645.6759152-UTR-P-littoralis_Contig80:173935..1739611680791645.6759152-UTR-P-littoralis_Contig80:173935..173961Pylaiella littoralis U1_48UTRP-littoralis_Contig80 173936..173961 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791645.69843-CDS-P-littoralis_Contig80:173961..1742851680791645.69843-CDS-P-littoralis_Contig80:173961..174285Pylaiella littoralis U1_48CDSP-littoralis_Contig80 173962..174285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig80.30.1prot_P-littoralis_Contig80.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig80 173962..174285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig80.30.1

>prot_P-littoralis_Contig80.30.1 ID=prot_P-littoralis_Contig80.30.1|Name=mRNA_P-littoralis_Contig80.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp
MKRAILQEAVEYLWRCEDHGELRAGQGFLDLPSAHPETRVSSPPASASSG
EGSSVARGGAGTAGPPTGHSSKRPIDVLDDSISELADASSMADAQDTRGD
ERLHGPLP
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mRNA from alignment at P-littoralis_Contig80:173626..174285+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig80.30.1 ID=mRNA_P-littoralis_Contig80.30.1|Name=mRNA_P-littoralis_Contig80.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=660bp|location=Sequence derived from alignment at P-littoralis_Contig80:173626..174285+ (Pylaiella littoralis U1_48)
TTTTTTCTTTTCTTTTCTTTCCTTTTTCCCCCTTCGCTGCCCATCATGAG
CGAGCTTCTCGACCTGGACCTCGCTTCAGCTGCGCCTATCCAGTCGTTCG
AGGAGGCCACGAGCGCCTGCGTCGACACCGATGACGCGGGGGTGCAGTCC
TGGAACTTGGCTCGCATCGCCGCAACTCCCGGACCACGCTCCGCGGCCAG
CTTGAGCGCCGACGAGGTGCTGTCCCTTGGGTATTCCCTCATCGCGGTGC
TCACAGCATCAAACCCACCCAAGCTCTTTCAGACCTTCCTGGCTGCGCGG
GCCGCGGGAGGCGACGCCGCGGACATCGAGAAGCGCATGAAACGCGCCAT
TCTCCAAGAAGCGGTTGAGTACCTCTGGCGGTGCGAAGACCACGGCGAGC
TCCGCGCGGGGCAAGGCTTCCTGGACCTGCCCTCCGCTCATCCGGAGACG
CGAGTGTCCTCTCCTCCTGCTTCCGCCTCTTCGGGGGAGGGTTCGTCCGT
CGCCCGCGGCGGCGCTGGGACCGCCGGACCACCCACGGGACACTCGTCCA
AGCGCCCCATTGACGTCCTGGACGATTCCATCAGCGAGCTGGCGGATGCC
TCGAGCATGGCGGATGCGCAGGACACCCGTGGCGACGAGCGCCTGCATGG
GCCCCTTCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig80:173626..174285+

>mRNA_P-littoralis_Contig80.30.1 ID=mRNA_P-littoralis_Contig80.30.1|Name=mRNA_P-littoralis_Contig80.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig80:173626..174285+ (Pylaiella littoralis U1_48)
ATGAAACGCGCCATTCTCCAAGAAGCGGTTGAGTACCTCTGGCGGTGCGA
AGACCACGGCGAGCTCCGCGCGGGGCAAGGCTTCCTGGACCTGCCCTCCG
CTCATCCGGAGACGCGAGTGTCCTCTCCTCCTGCTTCCGCCTCTTCGGGG
GAGGGTTCGTCCGTCGCCCGCGGCGGCGCTGGGACCGCCGGACCACCCAC
GGGACACTCGTCCAAGCGCCCCATTGACGTCCTGGACGATTCCATCAGCG
AGCTGGCGGATGCCTCGAGCATGGCGGATGCGCAGGACACCCGTGGCGAC
GAGCGCCTGCATGGGCCCCTTCCG
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