mRNA_P-littoralis_Contig80.110.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig80.110.1
Unique NamemRNA_P-littoralis_Contig80.110.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig80.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig80contigP-littoralis_Contig80:628519..632268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size336
Hectar predicted targeting categoryother localisation
Exons2
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791645.5810888-CDS-P-littoralis_Contig80:628518..6286081680791645.5810888-CDS-P-littoralis_Contig80:628518..628608Pylaiella littoralis U1_48CDSP-littoralis_Contig80 628519..628608 +
1680791645.5987523-CDS-P-littoralis_Contig80:632022..6322681680791645.5987523-CDS-P-littoralis_Contig80:632022..632268Pylaiella littoralis U1_48CDSP-littoralis_Contig80 632023..632268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig80.110.1prot_P-littoralis_Contig80.110.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig80 628519..632268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig80.110.1

>prot_P-littoralis_Contig80.110.1 ID=prot_P-littoralis_Contig80.110.1|Name=mRNA_P-littoralis_Contig80.110.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
QPFKGHRREATTWERPDTIQPRVSPTAPHSVVFRFPMSSPADSDADVQVV
TRAEFELQVQAGENERSHLSAEVADLQTSLEAKLATVLTTLQQVQQAHLG
GAHGGTQVAGHA
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mRNA from alignment at P-littoralis_Contig80:628519..632268+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig80.110.1 ID=mRNA_P-littoralis_Contig80.110.1|Name=mRNA_P-littoralis_Contig80.110.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3750bp|location=Sequence derived from alignment at P-littoralis_Contig80:628519..632268+ (Pylaiella littoralis U1_48)
CAGCCGTTCAAGGGCCATCGGCGCGAGGCTACGACGTGGGAGCGGCCGGA
CACCATCCAGCCGCGAGTCAGCCCTACTGCGCCACACTCGGTACGAGCGA
CGCATGTAACATTGTTAGGACTGAAAGGAAAATCGCCTGTTGTGTGGCTG
TGCGCGGATACGCGCTTCGTATGCGGATAGGCACGGAGTAGGTATGGCTA
GGGTTAGGGCCGAGCCTAAGGAGGCATATTATGCACAGTACCATCTGGTG
GGCACACAGTAGAGCACCACGTTACACGCGCTGCCGGTGCAGCGTAGACG
CACGACGCACTACTGCGCAATACGTGCGTACGTCAACACAAGCTGTCATC
TCGTTACACATTTGACATGAGACCTGCCAGGAGGTAACGATACACAGCAG
TGGATGTTCGCACATCGTATAAATGTAGACAGCCGTCGCACGCCGGTCAT
CTAAAAACCGGGCGAACCCATACCAGAGATCACTGACACACACATTGGGG
CACAGCGTAGGGACGCTGCACGCGTTCTGTCGCTAACGGGCGCGCGTGGC
CATGGGTCTAATATATCGTCTCACATTTGTCAAGGGACATGTCATAGGGT
ACCACGATGCGATCATATGAGAGTTGAGACTGTCGCACGCCACAGAGCGA
GTTGCCTTCATACCAACCCAGGTCGCCATTCGATAGACGCACACCCGTAA
TGATAGACGCACACCCATAATGAGGCTGCCGGCGCAGCACAGGTGCAGAT
AGCCATAACGTAGTCCACTATCGCGCATTTCGCACTTGGTACGTACGAGG
TACCGAATGCAGGTTCCGTAATGAGGTCACCAGGACATGTCGGACGAAAC
AAAAACAAAAATGCGGGTCACCCAAATCCAACTTTGATCCGTGGTACAGA
GACCGCCGCCCACACAATGGCGGAGAACCGAAGTTGTAGGCGTCATTCGA
CGCAGGGCCAACGATACTGTTACCATGAGCCACCACTGCTGTCCGATTGT
TGCGCGATCCACGATATCATGTCGTGAGATCGCACACACAACGGTCAGAG
AGGGCACATAGCAGCAGTAGTAGTCACATATATCGTTGCACATACACGAC
GACTCGACAGTCAACGCCGTGAGGTCAACTACATTAACAATATACCAAAG
TATGTAATACTTCGACTAGAGGGTGTGAACCGGAGTTGCAGGCGTCATAC
GACGCAGGGCAGACTATGCTACTACCATGCGCCACCACTGCTGTCCGATT
GTTGCGCGATCCACAACTTCCATGTAGTGAGTTCACGCACACAACGGGCA
GGGAGGGCACGCAGTAGCGGTAATAGTCGCTTATATAGCTGCACATTACA
CGACGATTTGCCAGTCAATGCCGTGAGGTCAACTTCATCTATTATCAATA
TACCGAAGTATGTGATACTCCAACTCGTGGGTGTAGTCGACGTAGTTGGC
CATACCGGAGAGAAAAATCCAGCAGTCTGAATCGAATAATAATACAAGGA
GACGAGAGAAACAAACCCGGAGGTTTCGAGTTTAACACATGTATTAGAGG
GTGTAGTCGACGTAGTCGACCACACAGGGTAAATTCAGCACAGCTGAGCA
CAGCTGAACTCATGATATACCAAAATATATGATACTCCGACTCGAGGGTG
TAGCCGACGTAGTCGACTACACGGGAGAGGGGAAAAACAAAATTCAGCGG
GTCTGAACCGAAAAGATAATACAACGAGACGAGGGACACCAACCCGGGGG
TTCGAGTTCAACGCATGTATTATAGGATGTAGTCGACGCAGTCGACTATA
GGGTGTAGTCGACGTAGTCGACCACACAGGGTAAATTCAGCGAAGCTGAA
ATAAAAGATATACCAAAGTATATGATACTCCGACTCGAGGGTGCAGCCGA
CGTAGTCGACCACACGGGAGAGAGGAAACACTAAAATTCAGCGGGCTGAA
CCGAAAGATAATACAAAGAGACGAGAGAAACAAACCCGGGGGTTTCGAGT
ACAACGCATGTATTATAGGGTGTAGTCGACTCAGTCGACCACAAAGGGGA
AATTCAGCAAGGCTGAAACGGAAGATAATACAAAGAGAAAAACGAACCCG
GCGGTTCTCGCATACAACACACGTATTATCCCGCCCGCATCACACACTGA
TGATATCAGGCGATGGCACTTCCAACGTAGTGTCAAAAAGCAGGTTTTGC
CCACATCCTCGCGTCCCGTAGTTTTGCCACGGTAACCGCGAGAGTAACAT
AACGCGTGCGATATACAGCGAAGCTCGAACAAATCCGCATGTCTGCGCAT
TACGGAAAACCCCGCGTCGTTGCCGCGGTGCACTCCGCACAATTACGATA
TCAAGAGGCCGGCGCCTCGACCGACGTAGTGCCACCAATGTCGTTTTGTT
TTGTTTTTCGTTGTCGCGGTGCACTCCGCACAATTACGATGTCAAGAGGC
CGGCGCCTCGACCGAAGTGGTGCCACCAATGTCGTTTTGTTTTGTTTTTC
GCAAGGGTGGAAAATCGGCATGGCCCATAAAATTCGCGTAACACCATCTG
CTGTCGCTGTCATACGTATCCATGACCATTGGCCGGCGCCAAAAAAAAAA
CCTCAATAGCACCAGCAGGGCCGCGGTTGTCACAAGTATGGAAAATAGGT
TCGGCACGTAGTTCTGCGTACCACGAGAACGAAGACAAACATACATATGG
CACCGAAATTAGGGTCTGTTCAAGCAGGAACAGCACCGTTTACTCGAATT
TCCGGCGTGGCGGTAGAATAAACAGGATTATCGATTCGGCATGGAGTAAC
CGGCCCCGCGGCGTGGAGACACGCGCACGGGATAGGTAAGTGGTCAGGTG
CAGCTATGGTCCCACTCTTATCTCACGATTGCGAACCCACCTGTCTGGTT
TTAATTTGGCGATGAATTTGTATTTTCCCAAGAGGTTTTTTTTCTTTTCG
GAGCCAACATTACTATCAGAGAGAGGAGTCGCAACCATGAGCTTTGAACA
CTGCAGCAGGCACGTATACACGGAATCGTACGGCGCACACCTATCGCACA
TACGTCACGCCGTAGGCACTGCTGGGGCAGATACGGTGCGATACCAAGGT
CGCACCCAGCCTGTATACAGCAGTTGCACAAAAACCGCATGTTAGTACGG
GCGAAGTGCCCAGGGTGATCCGGGGTAGGTAGCGGGGCATGCGCACTTAT
CCTCAAATCCCATGTGAAATATGCCGGCGCATGCTGATCGGGCTACGGGG
GTAAATAAAAGCGCCGGCGGGGCGTGAGTGATCGATATCACTCACGAAGA
AATATAGTGACGGGGTGTGGGTGCAACATATGCCACCCACGGTTaAAAGG
CGTCGAACGTGCCGGAGCACGAGGTTGTCACGCGTTAACCAGGCCCGCTG
CTATGTTCCACCTCCAATCATTTGCTGACCCCGCCCCTCCGCGGTACCCT
GCCACCCCCCCACCCCTTTGGACACAATCATCGGATTCATCGAATAAATT
CCAGGTGGTATTTCGGTTTCCTATGTCCTCGCCAGCCGACTCCGATGCCG
ACGTCCAAGTGGTGACGAGAGCTGAGTTCGAGCTGCAGGTGCAAGCCGGA
GAAAACGAGCGCTCTCACCTGTCGGCGGAGGTGGCGGACCTCCAAACCTC
GCTCGAGGCCAAGCTGGCCACGGTCCTCACCACTCTCCAGCAAGTGCAGC
AGGCGCATCTGGGCGGGGCCCACGGCGGCACCCAGGTAGCCGGCCACGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig80:628519..632268+

>mRNA_P-littoralis_Contig80.110.1 ID=mRNA_P-littoralis_Contig80.110.1|Name=mRNA_P-littoralis_Contig80.110.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig80:628519..632268+ (Pylaiella littoralis U1_48)
CAGCCGTTCAAGGGCCATCGGCGCGAGGCTACGACGTGGGAGCGGCCGGA
CACCATCCAGCCGCGAGTCAGCCCTACTGCGCCACACTCGGTGGTATTTC
GGTTTCCTATGTCCTCGCCAGCCGACTCCGATGCCGACGTCCAAGTGGTG
ACGAGAGCTGAGTTCGAGCTGCAGGTGCAAGCCGGAGAAAACGAGCGCTC
TCACCTGTCGGCGGAGGTGGCGGACCTCCAAACCTCGCTCGAGGCCAAGC
TGGCCACGGTCCTCACCACTCTCCAGCAAGTGCAGCAGGCGCATCTGGGC
GGGGCCCACGGCGGCACCCAGGTAGCCGGCCACGCC
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