mRNA_P-littoralis_Contig8.50.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig8.50.1
Unique NamemRNA_P-littoralis_Contig8.50.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig8.50.1 vs. uniprot
Match: D7G3S0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S0_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 8.560e-28
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 1
Query:   25 KTVSNKFDEKKIRDVLARRTRGEVECGTPAGCIDVFTKEEVIEIQHYKNWKSGIGQVKAYGGYYPRHITRLHIFAQE 255
            K  SNK  E+ +RD LAR+TRG+ E GTPAG IDVFT++EVIEI+H+KNWKSG+GQVKAYG ++P H  RLH+FA E
Sbjct:  656 KNASNKVSERDVRDALARQTRGQTEWGTPAGSIDVFTRDEVIEIKHFKNWKSGVGQVKAYGEHHPSHKQRLHLFAHE 732          
BLAST of mRNA_P-littoralis_Contig8.50.1 vs. uniprot
Match: A0A3M1SQZ3_9CYAN (MarR family transcriptional regulator n=1 Tax=Cyanobacteria bacterium J055 TaxID=2420338 RepID=A0A3M1SQZ3_9CYAN)

HSP 1 Score: 67.8 bits (164), Expect = 5.130e-12
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 1
Query:    7 PLVHSKKTVSNKFDEKKIRDVLARRTRGEVECGTPAGCIDVFTKEEVIEIQHYKNWKSGIGQVKAYGGYYPRHITRLHIF 246
            P ++  K  +    E ++R+ L  +  G  E  TPAG ID+ T+ E+IE++   +WKS +GQ+  Y G+YP H  RLH+F
Sbjct:   68 PSIYGLKMNNQDRIEFQVREHLKSQLGGLTEVKTPAGRIDLLTETEIIEVKRVDDWKSALGQILIYSGFYPEHQKRLHLF 147          
BLAST of mRNA_P-littoralis_Contig8.50.1 vs. uniprot
Match: A0A2L2DP27_MIMIV (N domain-containing n=3 Tax=Mimivirus TaxID=315393 RepID=A0A2L2DP27_MIMIV)

HSP 1 Score: 61.2 bits (147), Expect = 6.400e-9
Identity = 30/71 (42.25%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   34 SNKFDEKKIRDVLARRTRGEVECGTPAGCIDVFTKEEVIEIQHYKNWKSGIGQVKAYGGYYPRHITRLHIF 246
            SN   EKKI+  L ++  GE+E  T  G ID+ TK ++IEI+ Y NWK  +GQ+ AYG  Y      +++F
Sbjct:  276 SNNNKEKKIKLDLQKKLGGEIEVLTEHGYIDLLTKNKIIEIKSYDNWKYALGQILAYGQSYKNKNKYIYLF 346          
BLAST of mRNA_P-littoralis_Contig8.50.1 vs. uniprot
Match: L7RE44_9VIRU (KilA N-domain protein n=1 Tax=Acanthamoeba polyphaga moumouvirus TaxID=1269028 RepID=L7RE44_9VIRU)

HSP 1 Score: 60.5 bits (145), Expect = 6.830e-9
Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = 1
Query:   37 NKFDEKKIRDVLARRTRGEVECGTPAGCIDVFTKEEVIEIQHYKNWKSGIGQVKAYGGYYPRHITRLHIFAQEDRWPRDCA 279
            N   EK+++  L ++  G  E  T  G ID+ TK  ++EI+ Y NWK+ +GQ+ AY   YP    R+++F   D    DC 
Sbjct:  146 NNCKEKQLKLKLQKKLGGTTEVPTSCGKIDLLTKNYIVEIKTYNNWKAALGQILAYSDQYPDKNKRIYLFDVPD--DNDCV 224          
BLAST of mRNA_P-littoralis_Contig8.50.1 vs. uniprot
Match: YL032_MIMIV (Putative KilA-N domain-containing protein L32 n=8 Tax=Mimivirus TaxID=315393 RepID=YL032_MIMIV)

HSP 1 Score: 59.3 bits (142), Expect = 3.080e-8
Identity = 27/71 (38.03%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   34 SNKFDEKKIRDVLARRTRGEVECGTPAGCIDVFTKEEVIEIQHYKNWKSGIGQVKAYGGYYPRHITRLHIF 246
            SN   EK+I+  L +   G++E  T  G +D+ TK+++IEI+ Y NWK  +GQ+ AYG  Y      +++F
Sbjct:  277 SNNDKEKQIQLALQKSLGGKIEVRTKHGYVDLLTKDKIIEIKSYDNWKHALGQILAYGELYENKNKCIYLF 347          
BLAST of mRNA_P-littoralis_Contig8.50.1 vs. uniprot
Match: A0A2P1EKB3_9VIRU (KilA-N domain-containing protein n=3 Tax=Mimivirus TaxID=315393 RepID=A0A2P1EKB3_9VIRU)

HSP 1 Score: 58.9 bits (141), Expect = 3.130e-8
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   37 NKFDEKKIRDVLARRTRGEVECGTPAGCIDVFTKEEVIEIQHYKNWKSGIGQVKAYGGYYPRHITRLHIF 246
            N+  EK I++ L +   G +E  T  G ID+ TK  +IEI++Y NWK G+GQ+ +Y  ++P     L++F
Sbjct:  175 NENKEKIIQEELQKNLGGLIEVKTKVGAIDLLTKNTIIEIKNYDNWKHGLGQLLSYSIFHPDKTKCLYLF 244          
BLAST of mRNA_P-littoralis_Contig8.50.1 vs. uniprot
Match: H2EG18_9VIRU (Putative KilA-N domain-containing protein n=1 Tax=Moumouvirus Monve TaxID=1128131 RepID=H2EG18_9VIRU)

HSP 1 Score: 54.3 bits (129), Expect = 3.640e-7
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1
Query:   37 NKFDEKKIRDVLARRTRGEVECGTPAGCIDVFTKEEVIEIQHYKNWKSGIGQVKAYGGYYP 219
            N+  EK I++ L  +  G VE  T  G ID+ TK+ +IEI+ Y +WK G+GQ+ +Y  +YP
Sbjct:   51 NENKEKIIQEKLLIKLGGSVEVKTKIGKIDLLTKDTIIEIKDYDDWKHGLGQLLSYSFFYP 111          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig8.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G3S0_ECTSI8.560e-2866.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A3M1SQZ3_9CYAN5.130e-1238.75MarR family transcriptional regulator n=1 Tax=Cyan... [more]
A0A2L2DP27_MIMIV6.400e-942.25N domain-containing n=3 Tax=Mimivirus TaxID=315393... [more]
L7RE44_9VIRU6.830e-935.80KilA N-domain protein n=1 Tax=Acanthamoeba polypha... [more]
YL032_MIMIV3.080e-838.03Putative KilA-N domain-containing protein L32 n=8 ... [more]
A0A2P1EKB3_9VIRU3.130e-838.57KilA-N domain-containing protein n=3 Tax=Mimivirus... [more]
H2EG18_9VIRU3.640e-742.62Putative KilA-N domain-containing protein n=1 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig8contigP-littoralis_Contig8:257510..257791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1148.1001480
Model size282
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.13e-16
EggNOG OGs2EUDG@1|root,30HRK@2|Bacteria,1GI2U@1117|Cyanobacteria,1H6T7@1142|Synechocystis
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791633.6936767-CDS-P-littoralis_Contig8:257509..2577911680791633.6936767-CDS-P-littoralis_Contig8:257509..257791Pylaiella littoralis U1_48CDSP-littoralis_Contig8 257510..257791 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig8.50.1prot_P-littoralis_Contig8.50.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig8 257510..257791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig8.50.1

>prot_P-littoralis_Contig8.50.1 ID=prot_P-littoralis_Contig8.50.1|Name=mRNA_P-littoralis_Contig8.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=94bp
MAPLVHSKKTVSNKFDEKKIRDVLARRTRGEVECGTPAGCIDVFTKEEVI
EIQHYKNWKSGIGQVKAYGGYYPRHITRLHIFAQEDRWPRDCA*
back to top

mRNA from alignment at P-littoralis_Contig8:257510..257791+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig8.50.1 ID=mRNA_P-littoralis_Contig8.50.1|Name=mRNA_P-littoralis_Contig8.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig8:257510..257791+ (Pylaiella littoralis U1_48)
ATGGCGCCGCTTGTGCACTCAAAGAAAACCGTGTCAAACAAATTTGACGA AAAAAAGATCAGGGATGTTCTTGCTCGCCGCACCCGAGGCGAAGTCGAGT GCGGAACCCCTGCAGGCTGCATTGACGTTTTTACGAAGGAGGAGGTGATC GAAATCCAGCACTACAAAAATTGGAAGAGCGGGATCGGTCAGGTCAAGGC CTATGGAGGGTATTACCCACGGCACATAACACGTCTCCATATTTTCGCTC AGGAAGATAGATGGCCACGAGATTGTGCGTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig8:257510..257791+

>mRNA_P-littoralis_Contig8.50.1 ID=mRNA_P-littoralis_Contig8.50.1|Name=mRNA_P-littoralis_Contig8.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig8:257510..257791+ (Pylaiella littoralis U1_48)
ATGGCGCCGCTTGTGCACTCAAAGAAAACCGTGTCAAACAAATTTGACGA
AAAAAAGATCAGGGATGTTCTTGCTCGCCGCACCCGAGGCGAAGTCGAGT
GCGGAACCCCTGCAGGCTGCATTGACGTTTTTACGAAGGAGGAGGTGATC
GAAATCCAGCACTACAAAAATTGGAAGAGCGGGATCGGTCAGGTCAAGGC
CTATGGAGGGTATTACCCACGGCACATAACACGTCTCCATATTTTCGCTC
AGGAAGATAGATGGCCACGAGATTGTGCGTGA
back to top