mRNA_P-littoralis_Contig798.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig798.29.1
Unique NamemRNA_P-littoralis_Contig798.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Match: D7FPN7_ECTSI (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN7_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 7.890e-67
Identity = 119/225 (52.89%), Postives = 156/225 (69.33%), Query Frame = 1 
Query:  733 NLVDGGHTIVLLDLETTGLRPKTDRVIQLAAKVMGSRAPNHVFSVLVDPEGMYICDRIRELTGITPRVLAKNNARPFREVWPRFKSWLATVAVEVG------GGIVLAAHNATFDRGFLHEEIHRARLGGLTIAR-AGVMAFVDTLSVLRDRATWRQSDEELNVPPQPKAFKLGGLFEHVFGREMPGAHTAIGDVEGLEGVLSAPGISGRWRQVASTNPSCQIPV 1386
            +L +G HT+V++D+ETTGLR K DRVIQLAAKV+GS  P H F+  VDP  + +  R+RE+TGITP +LA N ARPF +VWP F +WL+ V  E        GG+V  AHNA FD  FL EE+ R       + +  GV+  VD+L  L++ + WRQ   + ++P +PK FKLGG+FEH++G EMP AH A+GDV GLE +LSAPGI+  WR VAS++PSCQIPV
Sbjct:  738 DLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEFVDPGAVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEEVSRCGFSRFMMGQDMGVVCIVDSLRCLKESSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSAPGINEGWRGVASSHPSCQIPV 962
[Close]
BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 3.070e-65
Identity = 117/225 (52.00%), Postives = 156/225 (69.33%), Query Frame = 1 
Query:  733 NLVDGGHTIVLLDLETTGLRPKTDRVIQLAAKVMGSRAPNHVFSVLVDPEGMYICDRIRELTGITPRVLAKNNARPFREVWPRFKSWLATVAVEVG------GGIVLAAHNATFDRGFLHEEIHRARLGGLTIAR-AGVMAFVDTLSVLRDRATWRQSDEELNVPPQPKAFKLGGLFEHVFGREMPGAHTAIGDVEGLEGVLSAPGISGRWRQVASTNPSCQIPV 1386
            +L +G HT+V++D+ETTGLR K DRVIQLAAKV+GS  P H F+  +DP  + +  R+RE+TGITP +LA N ARPF +VWP F +WL+ V  E        GG+V  AHNA FD  FL EE+ R       + +  GV+  VD+L  L++ + WRQ   + ++P +PK FKLGG+FEH++G EMP AH A+GDV GLE +LSAPGI+  WR VAS++P+CQIPV
Sbjct: 1137 DLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEYIDPGVVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEELSRCGFSRFMMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPNAHNAMGDVVGLERILSAPGINEGWRGVASSHPACQIPV 1361
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BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Match: A0A836CEI0_9STRA (ATP-dependent DNA helicase RecG n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI0_9STRA)

HSP 1 Score: 147 bits (370), Expect = 9.240e-34
Identity = 90/224 (40.18%), Postives = 130/224 (58.04%), Query Frame = 1 
Query:  727 PLNLVDGGHTIVLLDLETTGLRPKTDRVIQLAAKVM---GSRAPNHV-FSVLVDPEGMYICDRIRELTGITPRVLAKNNARPFREVWPRFKSWLATVAVE---------VGGGIVLAAHNATFDRGFLHEEIHRARLGGLTIARAGVMAFVDTLSVLRDRATWRQSDEELNVPPQPKAFKLGGLFEHVFGREMPGAHTAIGDVEGLEGVLSAPGISGRWRQVAS 1359
            PL+L    H  V+LD+ETTG     DRV+Q+AA V+   G  A  H  F++  DP   YI  +I+ LTGITP++L    A  F + W +F++WL   A +          G  IVL AHNA FD GFL  E  RA LG   I+ AG+ AFVD++++++DR  WRQ+   ++ PP  K   L  ++E++ GR++  AH A+ DV  L  V++   +  RWR++AS
Sbjct: 1195 PLDLTSEEHMFVVLDVETTGFSFAYDRVLQIAAAVLSVDGGGALQHGHFNMYCDP-AKYISAKIQGLTGITPQLLRSKGAVKFPQAWQQFQAWLNAAAAQHKATNGNATSGTSIVLIAHNANFDHGFLVAETERAGLGSDAISSAGITAFVDSVALVKDRDLWRQAG--MDPPPTNK---LTDVYEYLEGRKVSDAHNAMADVIALATVVNGSVLRDRWREMAS 1412
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BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Match: W7TB29_9STRA (Atp-dependent dna helicase (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TB29_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.290e-26
Identity = 77/230 (33.48%), Postives = 116/230 (50.43%), Query Frame = 1 
Query:  754 TIVLLDLETTGLRPKTDRVIQLAAKVM-------------------------GSRAPNHVFSVLVDPEGMYICDRIRELTGITPRVLAKNNARPFREVWPRFKSWLATVAVEVGGGIVLAAHNATFDRGFLHEEIHRARLGGLTIAR-AGVMAFVDTLSVLRDRATWRQSDEELNVPPQPKAFKLGGLFEHVFGREMPGAHTAIGDVEGLEGVLSAPGISGRWRQVASTN 1365
            T ++ D ETTGLR +++R+IQLAAKV+                         G      +F+  VDP G +I  +I E+TGI+   L +  AR F EVWP F  W+   AV  G  +VL AHNA FD   L  ++ R+ L          ++  +DTL+V R    W +   +  +P +P  F+ G L+ ++   ++  AH+A GDV GLE +L  P ++ +WR   S +
Sbjct:  622 TFIIFDTETTGLRAESERIIQLAAKVLSPSNWGGEEDDEQANELVAAGLACGGEPEDGLLFNAYVDP-GFWIPAKITEITGISNEFLFRQRARRFEEVWPDFLRWVN--AVRGGKPVVLVAHNAGFDHKMLMFDLRRSNLDERVFKEETQIVGMMDTLAVFRGDEIWSRRSGD-GLPIKPNTFRQGALYRYLLRDDLKNAHSAKGDVLGLEALLKHPFVNKKWRSAGSAH 847
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BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Match: A0A4D9CQG2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQG2_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.870e-26
Identity = 77/230 (33.48%), Postives = 116/230 (50.43%), Query Frame = 1 
Query:  754 TIVLLDLETTGLRPKTDRVIQLAAKVM-------------------------GSRAPNHVFSVLVDPEGMYICDRIRELTGITPRVLAKNNARPFREVWPRFKSWLATVAVEVGGGIVLAAHNATFDRGFLHEEIHRARLGGLTIAR-AGVMAFVDTLSVLRDRATWRQSDEELNVPPQPKAFKLGGLFEHVFGREMPGAHTAIGDVEGLEGVLSAPGISGRWRQVASTN 1365
            T ++ D ETTGLR +++R+IQLAAKV+                         G      +F+  VDP G +I  +I E+TGI+   L +  AR F EVWP F  W+   AV  G  +VL AHNA FD   L  ++ R+ L          ++  +DTL+V R    W +   +  +P +P  F+ G L+ ++   ++  AH+A GDV GLE +L  P ++ +WR   S +
Sbjct: 1040 TFIIFDTETTGLRAESERIIQLAAKVLSPSDWGGGEDDEQANQLAAAGLASGGEPEDGLLFNGYVDP-GFWIPAKITEITGISNEFLFRQRARRFEEVWPDFLRWVN--AVRGGKPVVLVAHNAGFDHKMLMFDLRRSNLDERVFKEETQIVGMMDTLAVFRGDEIWSRRSGD-GLPIKPNTFRQGALYRYLLRDDLQNAHSAKGDVLGLEALLKHPFVNKKWRSAGSAH 1265
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BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Match: A0A7S3UQS9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQS9_HETAK)

HSP 1 Score: 112 bits (279), Expect = 7.760e-25
Identity = 73/167 (43.71%), Postives = 89/167 (53.29%), Query Frame = 1 
Query:  727 PLNLVDGGHTIVLLDLETTGLRPKTDRVIQLAAKVMGSRAPNHVFSVLV-DPEGMYICDRIRELTGITPRVLAKNNARPFREVWPRFKSWLATVAVEVGGGIVLAAHNATFDRGFLHEEIHRA--RLGGL--------------TIARAGVMAFVDTLSVLRDRATW 1176
            P++L+     IVLLD+ETTGL     RV+QLAAKV+GSRAP   F+  +  PE     +  RE+TGIT  VL K  A PF E W  F+ WLA V        VL AHNA FDR FL  EI R    +GG                +AR  V A V T  +L+DR+ W
Sbjct:   32 PVSLLQENVVIVLLDVETTGLDAGRHRVLQLAAKVLGSRAPGAAFATYIRPPENTPWAEGAREVTGITWEVLEKEGALPFSEAWALFRRWLAEV--------VLVAHNAPFDRRFLEAEIERLLPNVGGXXXXXXXXXXXXXRGALARENVAAVVCTWKLLKDRSLW 190
[Close]
BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Match: UPI001AFD524B (3'-5' exonuclease n=1 Tax=Brevibacillus reuszeri TaxID=54915 RepID=UPI001AFD524B)

HSP 1 Score: 74.7 bits (182), Expect = 1.000e-11
Identity = 68/192 (35.42%), Postives = 95/192 (49.48%), Query Frame = 1 
Query:  757 IVLLDLETTGLRPKTDRVIQLAA-KVMGSRAPNHVFSVLVDPEGMYICDRIRELTGITPRVL--AKNNARPFREVWPRFKSWLATVAVEVGGGIVLAAHNATFDRGFLHEEIHRARLGGLTIARAGVMAFVDTLSVLRDRATWRQSDEELNVPPQPKAFKLGGLFEHVFGREMPGAHTAIGDVEGLEGVLSA 1323
            I + D ETTGL P+T+RVI++AA +V+  +  +  F  LV+P G  +  +I E+TGIT  +L  A +    FR +    K  L            L AHNA FD  FLH  + R  L G T        F+DTL++ R+R T+                KL  +    +G EM GAH A+ DVEG   +L+A
Sbjct:    6 ITVFDFETTGLDPRTERVIEMAAIRVINGQIVSG-FHTLVNP-GRPLTPKITEITGITDDMLTDAMDENIAFRILRNIMKDSL------------LVAHNAAFDLQFLHWAMQR--LAGKTFDNP----FIDTLTISRERTTYPH--------------KLTDMCSK-YGVEMEGAHRALNDVEGCWKLLNA 162
[Close]
BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Match: A0A497C6E9_9CHLR (3'-5' exonuclease DinG n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A497C6E9_9CHLR)

HSP 1 Score: 77.0 bits (188), Expect = 4.200e-11
Identity = 47/113 (41.59%), Postives = 64/113 (56.64%), Query Frame = 1 
Query:  757 IVLLDLETTGLRPKTDRVIQLAAKVMGSRAPNHVFSVLVDPEGMYICDRIRELTGITPRVLAKNNARPFREVWPRFKSWLATVAVEVG-----GGIVLAAHNATFDRGFLHEE 1080
            I++LDLETTGL PKTD++I++ A +   +     FS LV+P G+ I   I ELTGIT  ++   NA P  E    FK +L     + G     G + +A HN  FD  FL+EE
Sbjct:    6 ILVLDLETTGLDPKTDKIIEIGAVLHTEKGKQVEFSQLVNP-GIPIPRFITELTGITREMVQSENALPIEEALQNFKDFLIKELGQFGAVSKIGSLPVAGHNVGFDLSFLNEE 117
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BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Match: A0A3D1V660_9CHLR (GIY-YIG domain-containing protein (Fragment) n=4 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3D1V660_9CHLR)

HSP 1 Score: 72.0 bits (175), Expect = 5.080e-10
Identity = 65/221 (29.41%), Postives = 93/221 (42.08%), Query Frame = 1 
Query:  760 VLLDLETTGLRPKTDRVIQLAAKVMGSRAPNHVFSVLVDPEGMYICDRIRELTGITPRVLAKNNARPFREVWPRFKSWLATVAVEVGGGIVLAAHNATFDRGFLHEEIHRARLGGLTIARAGVMAFVDTLSVLRDRATWRQSDEELNVPPQPK------AFKLGGLFEHVFGREMPGAHTAIGDVEGLEGVLSAP----GISGRWRQVASTNPSCQIPVLP 1392
            V++D+ETTGL+P   R+I++    +        +S LV+PE   I D IR LTGI  +++A   A  FR + P          VE+ G + L  HN  FD GFL+ E+ RA L  L       +A   TL+    R         L +P +        A     +F  + GR        + D+  L     AP       GR R +  T+    IP  P
Sbjct:   91 VVVDVETTGLKPAQQRIIEVGLIRVSPHGAPFRWSSLVNPERR-IPDYIRSLTGIDDQLVA--GAPDFRSIAPTI--------VEIVGDLPLVGHNVEFDIGFLNAELARAGLPKLINQSIDTLALAATLAPETRRLNLGDVARSLGIPAKESHRSSNDATTTLEVFGALLGRAQKHGLVTLEDLTRLNQTRRAPVPVHNAVGRGRSILDTSHLASIPHAP 300
[Close]
BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Match: A0A1F2FGY8_9CORY (DNA polymerase III subunit epsilon n=8 Tax=Corynebacterium TaxID=1716 RepID=A0A1F2FGY8_9CORY)

HSP 1 Score: 72.4 bits (176), Expect = 7.760e-10
Identity = 69/198 (34.85%), Postives = 92/198 (46.46%), Query Frame = 1 
Query:  724 LPLNLVDGGHTIVLLDLETTGLRPKTDRVIQLAAKVMGSRAPNHVFSVLVDPEGMYICDRIRELTGITPRVLAKNNARPFREVWPRFKSWLATVAVEVGGGIVLAAHNATFDRGFLHEEIHRARLGGLTIARAGVMAFVDTLSVLRDRATWRQSDEELNVPPQPKAFKLGGLFEHVFGREMPGAHTAIGDVEGLEGVL 1317
            +P +L  G  T V++DLETTG+RP  D +I++ A  +        FS L+DP GM +   I +LTGIT   L  ++A     V PRF        +E   G V  AHNA FD GFL     +    GL      V   VDTL + R     R  D       +  +F+LG L  +V G E+   H A+ D      VL
Sbjct:    1 MPDDLGLGDTTFVVVDLETTGMRPGDDHIIEIGAVRVRGGVEEGRFSELIDP-GMPLPSFISDLTGITDSDL--DDAPQLGSVLPRF--------LEFARGAVWVAHNAPFDIGFLRASCRQL---GLPWPAPTV---VDTLQLAR-----RLLDRN-----RTGSFRLGDLARYV-GAEVTPNHRALDDAAATVAVL 170
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig798.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPN7_ECTSI7.890e-6752.89ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
A0A6H5JXY9_9PHAE3.070e-6552.00ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
A0A836CEI0_9STRA9.240e-3440.18ATP-dependent DNA helicase RecG n=1 Tax=Tribonema ... [more]
W7TB29_9STRA1.290e-2633.48Atp-dependent dna helicase (Fragment) n=1 Tax=Nann... [more]
A0A4D9CQG2_9STRA3.870e-2633.48Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3UQS9_HETAK7.760e-2543.71Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI001AFD524B1.000e-1135.423'-5' exonuclease n=1 Tax=Brevibacillus reuszeri T... [more]
A0A497C6E9_9CHLR4.200e-1141.593'-5' exonuclease DinG n=1 Tax=Chloroflexi bacteri... [more]
A0A3D1V660_9CHLR5.080e-1029.41GIY-YIG domain-containing protein (Fragment) n=4 T... [more]
A0A1F2FGY8_9CORY7.760e-1034.85DNA polymerase III subunit epsilon n=8 Tax=Coryneb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig798contigP-littoralis_Contig798:90704..94883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FPN7
Preferred nameTREX2
PFAMsDEAD,Helicase_C,RNase_T
Model size1535
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02335,ko:K03655,ko:K10790,ko:K10791,ko:K10900,ko:K10905
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,ko03460,ko04623,map00230,map00240,map01100,map03030,map03410,map03420,map03440,map03460,map04623
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000166,GO:0000266,GO:0000287,GO:0000738,GO:0001817,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006281,GO:0006298,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008296,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010033,GO:0010501,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017076,GO:0017111,GO:0019439,GO:0030554,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032404,GO:0032405,GO:0032407,GO:0032479,GO:0032552,GO:0032554,GO:0032558,GO:0033554,GO:0033955,GO:0034097,GO:0034641,GO:0034645,GO:0034655,GO:0035456,GO:0035458,GO:0036094,GO:0042175,GO:0042221,GO:0042623,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046483,GO:0046700,GO:0046872,GO:0046983,GO:0048285,GO:0050789,GO:0050896,GO:0051239,GO:0051716,GO:0065007,GO:0070013,GO:0070035,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0097367,GO:0098827,GO:0140097,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901576
Exons6
Evalue1.29e-67
EggNOG OGsCOG0847@1|root,KOG0344@1|root,KOG0344@2759|Eukaryota,KOG4793@2759|Eukaryota
EC2.7.7.7,3.1.11.2,3.6.4.12
Descriptionexodeoxyribonuclease III activity
Cds size1533
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig798.29.1prot_P-littoralis_Contig798.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig798 90706..94883 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791629.3845618-CDS-P-littoralis_Contig798:90705..908981680791629.3845618-CDS-P-littoralis_Contig798:90705..90898Pylaiella littoralis U1_48CDSP-littoralis_Contig798 90706..90898 -
1680791629.4091213-CDS-P-littoralis_Contig798:91404..915101680791629.4091213-CDS-P-littoralis_Contig798:91404..91510Pylaiella littoralis U1_48CDSP-littoralis_Contig798 91405..91510 -
1680791629.422909-CDS-P-littoralis_Contig798:91866..919971680791629.422909-CDS-P-littoralis_Contig798:91866..91997Pylaiella littoralis U1_48CDSP-littoralis_Contig798 91867..91997 -
1680791629.4332833-CDS-P-littoralis_Contig798:92310..925031680791629.4332833-CDS-P-littoralis_Contig798:92310..92503Pylaiella littoralis U1_48CDSP-littoralis_Contig798 92311..92503 -
1680791629.443581-CDS-P-littoralis_Contig798:93220..933021680791629.443581-CDS-P-littoralis_Contig798:93220..93302Pylaiella littoralis U1_48CDSP-littoralis_Contig798 93221..93302 -
1680791629.4575114-CDS-P-littoralis_Contig798:94055..948831680791629.4575114-CDS-P-littoralis_Contig798:94055..94883Pylaiella littoralis U1_48CDSP-littoralis_Contig798 94056..94883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig798.29.1

>prot_P-littoralis_Contig798.29.1 ID=prot_P-littoralis_Contig798.29.1|Name=mRNA_P-littoralis_Contig798.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=511bp
QDDNGAGGTLSTPATPPMIYVTRSLRPALAAEGFECGGCAEPVPASGNKN
AAGSAVEEWDRPESFEFLREFVSNTENTRGPLSDRSALKNAQQPHRPVAE
HEYPVRGTPAAATGSAKSPRPPSPISSPKPALALRGGDHLSACSGARGPG
GAGEAGAVDGERAGGVQAGGGTGRPRALSEDGVLARSCRSFGVEGGLESM
EEDSADVKGFSALAAALEGSSSSLSPSSSSSSVAAATSTSQLPLNLVDGG
HTIVLLDLETTGLRPKTDRVIQLAAKVMGSRAPNHVFSVLVDPEGMYICD
RIRELTGITPRVLAKNNARPFREVWPRFKSWLATVAVEVGGGIVLAAHNA
TFDRGFLHEEIHRARLGGLTIARAGVMAFVDTLSVLRDRATWRQSDEELN
VPPQPKAFKLGGLFEHVFGREMPGAHTAIGDVEGLEGVLSAPGISGRWRQ
VASTNPSCQIPVLPPLEDESQPRTKNTTNPLRARKPSKISPRLPGVEGVG
AGSERTDKKGG
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mRNA from alignment at P-littoralis_Contig798:90704..94883-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig798.29.1 ID=mRNA_P-littoralis_Contig798.29.1|Name=mRNA_P-littoralis_Contig798.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4180bp|location=Sequence derived from alignment at P-littoralis_Contig798:90704..94883- (Pylaiella littoralis U1_48)
CAGGATGACAACGGTGCGGGAGGCACGCTCTCCACCCCGGCGACGCCGCC
GATGATCTACGTAACCCGCTCACTCAGGCCCGCGCTTGCGGCGGAGGGTT
TCGAGTGTGGAGGCTGTGCTGAGCCGGTCCCGGCCAGCGGGAACAAAAAC
GCGGCAGGCTCAGCGGTTGAGGAGTGGGACCGGCCCGAGAGCTTCGAGTT
TCTGCGGGAATTCGTTTCGAACACCGAGAACACGCGAGGGCCGTTGAGCG
ACCGCAGCGCGCTCAAGAACGCGCAGCAACCGCACCGGCCAGTGGCAGAG
CATGAATATCCCGTGCGTGGGACACCAGCGGCGGCCACCGGATCAGCCAA
GTCACCACGGCCGCCATCGCCTATCAGCAGCCCAAAACCTGCGCTCGCGT
TGCGTGGAGGCGACCACCTGTCGGCTTGCAGCGGAGCGAGGGGGCCCGGG
GGCGCCGGTGAAGCGGGTGCGGTGGACGGAGAGCGAGCGGGGGGGGTCCA
AGCGGGAGGAGGAACCGGAAGACCACGCGCGCTGAGCGAGGATGGGGTGC
TCGCGCGGTCTTGCCGTAGTTTCGGCGTCGAAGGGGGGCTGGAAAGCATG
GAGGAGGACAGTGCTGACGTCAAGGGGTTTTCAGCCCTGGCAGCAGCCCT
GGAGGGGTCGTCGTCGTCGTTGTCGCCTTCGTCGTCGTCGTCGTCGGTGG
CGGCGGCCACGAGCACGAGCCAGCTGCCTTTGAACCTGGTGGACGGAGGA
CACACGATTGTGCTGCTCGATCTCGAGACCACGGGGCTCCGGCCCAAGAC
GGATCGAGTTATTCAGCTGGCCGCCAAGGTACGCCGCCGTGTCATGTACT
GCATGTACCTCGAAGTACAGTGCTCTTTGTGGACATCAGATCCACGGCGA
GTGATTGGTGCCGTCCAACCAACTCTTCCCCCCCCGCCATGAGTTCCCGT
CTAAGTACGGTTGTCGCGATGGAGGAGCTGGAGAGATTCTCAACAGATTG
AAAGTGCTCCCCGAATCTGAGATAAGAACGAAGGCCTCTCTGCTACGCCT
GATCCATGCTCTTGTCGATGTAGTAAAATACTGAGCCTGTCAGCGATTGG
GTGCACGCCGCCCCTCTCTTGGGAAATACAGCAGCAGTGGTGCAAATTTT
GCTGGAAAGAGAATGGTGCAAGGTAAGCTCCCTCCCATGGTTGTCACCGT
TCACTGAACCGCTAGGCGATGCGAATGCTCCCAAAAAATAAGGTGTGTAT
CTGTTCAGAGACCTCGTCGTCGTGCTGGAGTAATCCTCAACTTTTCATCA
CAACTTCCAGCCGTGCCACCTGTTGTCCTTCGGCGTGGGCCAGCGCGGCC
GGCGTCTCTATCCCACCGCTTTTCCTCCACGCTGTACGCGTGCTGCTTGC
AGTCAAAGCTCTCTCCGTGTCGTTCTATATACATACCCGCCATAACTGAT
GGCTTCAAATGTAAAGACTATTTTTTTGTGAAACAATTTTCGTATCTTGA
CGTTTCGTTGAATCCCGCCACCCCGGTTTTACACTCCTGCTCCTTCCCCC
CCCCCCCTATTCCTCATACCGGTGTCGCAAGGTCATGGGCAGCCGGGCCC
CGAATCACGTGTTTTCAGTCCTCGTCGACCCAGAGGGGATGTATATTTGC
GACAGAATCCGAGGTATGGTCGTCGTTCCCTCTCGGCGATGCTTTTCCCG
TGCCCTTTTGGTTCGTATTGCGTGTAAATACAAGCACGCGTGCACGCTCC
TACGTCCGTGATGGCAACTCGCGACCTGCTGCTGCTCGTAGGACGGAAAA
GAAAAAAAGAGTGGCCCGCCTCCAATATTTTTTCGTGTTCCCTGCTCAGC
AGGTACAACTTCTGGACCTCCTTCGTCACCGCCGGCAGTGCGCTCAGTCA
GTTACTGTCAGCTTTCCCCTTCATCGTTGGTTTCACGACCGCTGCACGAA
GTGCCTTTCCCTCTTTACTGAATTGAACGTTTCTACAAATGACACGCCGA
AGTAGCGAATATGGGAGCGTGCCCTGGCGTGGGCGATGCAGGTTTGGTTT
TGGTTTCGCACACAATCAGCTTGAAGATTGCTCGTCAAAATGTTTCAGAC
TGCTGTACGATACATCAAAGTACGATTGCTTTCAACAAGCTATGGCTGCC
TCGGTACATTCGTTACTAATTCGGTACTTGTTTATACTGCAGGCCCAACC
GCCCTGTTTGTCTTATTTCGGGAATGTGTGCTGCTATTTACTTCACCATC
TGCCGCCGCTCGACTTAGACCTCCGCCCCGTCCACCGTGCCTCCTTCCTT
CCTCCCTTCCTCCTAATCATGTCTCCGATTCCGCCCTGGGGGGGGGCGAT
TTCGGACTTTCGTGGTTCTCCTACGCGCAGAACTGACGGGCATCACACCG
CGGGTTCTGGCGAAGAACAACGCTAGACCTTTCCGCGAGGTCTGGCCGCG
GTTCAAGTCGTGGTTGGCCACTGTTGCTGTGGAAGTGGGAGGCGGAATTG
TCTTGGCTGCGCACAACGCCACGTTCGACCGCGGTTTTCTGCACGAGGAG
ATACACCGGGCGAGGCTGGGCGGGTACGAAGCAATCATTCGTTGACCCCC
CCTTTGCTTTGAAGTGATGATGTTGATGGGCATTGCAGTGCACTTTTGTC
CCTCTGGTGCTCCACTACGTATCAGGGTGGCAGTCGTGGTAGGGGGTAGT
TCGGAGCATGTCCTCGGAACCTAGGGGCATGGTGGCAACGATGATTATGG
TGCCGGTGAGGATGACAAAACGACAATGATGGTTGCGGTGGTGATGGTGA
TAACGGCGGCGACAAATACAGCAGTGATCGATGGCGATGAAATGATAAAA
ATAATCCGGTTGTTCCTGGCGTTCTTGTTTCGGCAGGTTAACGATAGCGA
GGGCTGGAGTGATGGCCTTTGTCGACACTCTGAGCGTTCTGCGGGACAGG
GCGACGTGGAGACAGAGCGACGAAGAGCTGAACGTCCCGCCCCAACCGAA
GGCCTTCAAACTCGGCGGTGAGACACCTGGTATTTTCGAGTTTGGTTTGG
CTGTCAAGCGTGCACCTCTGCAAGCGCGCGATGTCGAGCTCGCGCTCTTG
CTTGTCCAGACCAAGCATCCCTATTTGTTTGACTGCAGGCGCTTGGAACG
CTTGACCGCGAGTTGATCAGCTGACGTTGAGCTATCATAGAGCTATGCTA
CGAGACAACACGCAGATCGGTCATTGACGCACCTGCCTCTGTGACTGACA
ATCCCGAATGGACATCCCTAGCTGTTGAGTACCCGTGGTGTTTCCTCACA
CCTCTCGCTTAATTCTCGTTACGTAACCCCCCCCCCCCCCCCATATACAC
ACAAATACACCCCGAACCAACAGGGCTGTTTGAACACGTGTTCGGGCGAG
AGATGCCTGGGGCGCACACCGCCATCGGCGACGTGGAGGGGCTAGAGGGT
GTCCTGTCTGCGCCGGGCATCAGTGGGAGGTGGGTACATTCGGTAGAGTC
CAAGCGGTTGGTGTTTCATGGTTTCAAAGTCACGGGGCGCCTGCTGTGAG
AAGGGCGGGTGGGTGTTTTTCCGCTCGCTGCGCTTGCTCCTTTTTTGGGG
ACTGACTTGACTCCTGTCGGTCGGTGGTGCGTGTTTGCTTTTTTTTGTCT
GTAAAGTTCCGGTTAACACAAAGTGTTGTGTGTGTGTGTGTGTTACTGGG
CGTGCATGCGTCTGTGATATCTCCGGCGAATTCTTGGGCTTGCTTTCGAC
CTTTCCGGGACCAAATAGACGAAACCGCTCCCCCACACCCACCCATCTGC
CCGTCTGCCGTGCCCCGTCCCTGTTGACATTTCTAGGTGGACGGGGACGT
ACATACCTAGCCATGTACGATGACCGGTACCCCACCACCACACCACTACC
ACCACCACCACCACCACCACCACCACCGCCGCCGCCGCCGCCGCCGCCGC
CGCCCTTCCGTCAACTGTAATGAATCTAAATCCAGGTGGCGGCAAGTGGC
TAGCACCAACCCATCGTGTCAGATACCGGTGCTCCCCCCCTTGGAGGATG
AGTCGCAGCCCCGGACGAAGAACACCACGAACCCCTTGCGCGCCAGAAAG
CCGTCGAAAATATCCCCCAGGTTGCCAGGAGTTGAGGGGGTGGGGGCGGG
GAGCGAAAGAACAGATAAAAAAGGAGGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig798:90704..94883-

>mRNA_P-littoralis_Contig798.29.1 ID=mRNA_P-littoralis_Contig798.29.1|Name=mRNA_P-littoralis_Contig798.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1533bp|location=Sequence derived from alignment at P-littoralis_Contig798:90704..94883- (Pylaiella littoralis U1_48)
CAGGATGACAACGGTGCGGGAGGCACGCTCTCCACCCCGGCGACGCCGCC
GATGATCTACGTAACCCGCTCACTCAGGCCCGCGCTTGCGGCGGAGGGTT
TCGAGTGTGGAGGCTGTGCTGAGCCGGTCCCGGCCAGCGGGAACAAAAAC
GCGGCAGGCTCAGCGGTTGAGGAGTGGGACCGGCCCGAGAGCTTCGAGTT
TCTGCGGGAATTCGTTTCGAACACCGAGAACACGCGAGGGCCGTTGAGCG
ACCGCAGCGCGCTCAAGAACGCGCAGCAACCGCACCGGCCAGTGGCAGAG
CATGAATATCCCGTGCGTGGGACACCAGCGGCGGCCACCGGATCAGCCAA
GTCACCACGGCCGCCATCGCCTATCAGCAGCCCAAAACCTGCGCTCGCGT
TGCGTGGAGGCGACCACCTGTCGGCTTGCAGCGGAGCGAGGGGGCCCGGG
GGCGCCGGTGAAGCGGGTGCGGTGGACGGAGAGCGAGCGGGGGGGGTCCA
AGCGGGAGGAGGAACCGGAAGACCACGCGCGCTGAGCGAGGATGGGGTGC
TCGCGCGGTCTTGCCGTAGTTTCGGCGTCGAAGGGGGGCTGGAAAGCATG
GAGGAGGACAGTGCTGACGTCAAGGGGTTTTCAGCCCTGGCAGCAGCCCT
GGAGGGGTCGTCGTCGTCGTTGTCGCCTTCGTCGTCGTCGTCGTCGGTGG
CGGCGGCCACGAGCACGAGCCAGCTGCCTTTGAACCTGGTGGACGGAGGA
CACACGATTGTGCTGCTCGATCTCGAGACCACGGGGCTCCGGCCCAAGAC
GGATCGAGTTATTCAGCTGGCCGCCAAGGTCATGGGCAGCCGGGCCCCGA
ATCACGTGTTTTCAGTCCTCGTCGACCCAGAGGGGATGTATATTTGCGAC
AGAATCCGAGAACTGACGGGCATCACACCGCGGGTTCTGGCGAAGAACAA
CGCTAGACCTTTCCGCGAGGTCTGGCCGCGGTTCAAGTCGTGGTTGGCCA
CTGTTGCTGTGGAAGTGGGAGGCGGAATTGTCTTGGCTGCGCACAACGCC
ACGTTCGACCGCGGTTTTCTGCACGAGGAGATACACCGGGCGAGGCTGGG
CGGGTTAACGATAGCGAGGGCTGGAGTGATGGCCTTTGTCGACACTCTGA
GCGTTCTGCGGGACAGGGCGACGTGGAGACAGAGCGACGAAGAGCTGAAC
GTCCCGCCCCAACCGAAGGCCTTCAAACTCGGCGGGCTGTTTGAACACGT
GTTCGGGCGAGAGATGCCTGGGGCGCACACCGCCATCGGCGACGTGGAGG
GGCTAGAGGGTGTCCTGTCTGCGCCGGGCATCAGTGGGAGGTGGCGGCAA
GTGGCTAGCACCAACCCATCGTGTCAGATACCGGTGCTCCCCCCCTTGGA
GGATGAGTCGCAGCCCCGGACGAAGAACACCACGAACCCCTTGCGCGCCA
GAAAGCCGTCGAAAATATCCCCCAGGTTGCCAGGAGTTGAGGGGGTGGGG
GCGGGGAGCGAAAGAACAGATAAAAAAGGAGGG
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