mRNA_P-littoralis_Contig797.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig797.28.1
Unique NamemRNA_P-littoralis_Contig797.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig797.28.1 vs. uniprot
Match: A0A6H5KM55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM55_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.530e-11
Identity = 29/45 (64.44%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:  235 PAGMYRPQGNEPPIHGADPRQRCISCGEFGHIHQFCPARTKIHPP 369
            P  MYRPQGNEPPIH  DPR+RC  CGE GH H FCP+R  +  P
Sbjct:  319 PPHMYRPQGNEPPIHPNDPRKRCEDCGELGHNHLFCPSRVDVGRP 363
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BLAST of mRNA_P-littoralis_Contig797.28.1 vs. uniprot
Match: A0A6H5JNY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY3_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.610e-10
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:  244 MYRPQGNEPPIHGADPRQRCISCGEFGHIHQFCPARTKIHPP 369
            MYRPQGNEPPIH  DPR+RC +CGE GH + F P+R  +  P
Sbjct:    1 MYRPQGNEPPIHPNDPRKRCENCGELGHNYLFLPSRVDVGRP 42
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig797.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KM55_9PHAE1.530e-1164.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNY3_9PHAE2.610e-1061.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig797contigP-littoralis_Contig797:63613..64018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size406
Hectar predicted targeting categoryother localisation
Exons1
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791627.724514-CDS-P-littoralis_Contig797:63613..640181680791627.724514-CDS-P-littoralis_Contig797:63613..64018Pylaiella littoralis U1_48CDSP-littoralis_Contig797 63614..64018 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig797.28.1prot_P-littoralis_Contig797.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig797 63614..64018 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig797.28.1

>prot_P-littoralis_Contig797.28.1 ID=prot_P-littoralis_Contig797.28.1|Name=mRNA_P-littoralis_Contig797.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=135bp
QERAARGLRTAATWISPTASVGWGRKGARVLQQQHNNGGGGHQVPERYGA
GSSGPRWADAKTLPAYQAPDGGYNYDRYPAGMYRPQGNEPPIHGADPRQR
CISCGEFGHIHQFCPARTKIHPPDPGIVRQPTSNT
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mRNA from alignment at P-littoralis_Contig797:63613..64018-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig797.28.1 ID=mRNA_P-littoralis_Contig797.28.1|Name=mRNA_P-littoralis_Contig797.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=406bp|location=Sequence derived from alignment at P-littoralis_Contig797:63613..64018- (Pylaiella littoralis U1_48)
CAGGAACGTGCGGCGAGGGGGCTACGCACAGCAGCAACATGGATTTCGCC
AACAGCGTCAGTCGGGTGGGGGCGCAAGGGGGCAAGGGTACTGCAGCAAC
AGCACAACAACGGGGGAGGAGGTCATCAAGTCCCTGAAAGGTATGGTGCT
GGAAGTAGTGGTCCGAGGTGGGCAGACGCGAAAACTTTGCCTGCGTATCA
GGCCCCTGACGGGGGATACAACTACGACAGATACCCGGCGGGCATGTACC
GCCCACAAGGAAATGAACCCCCTATCCACGGGGCGGATCCACGACAGCGG
TGCATCTCGTGTGGTGAGTTTGGACACATTCACCAATTTTGCCCCGCGAG
GACCAAGATACACCCGCCCGATCCCGGTATAGTCCGACAGCCAACCAGCA
ACACCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig797:63613..64018-

>mRNA_P-littoralis_Contig797.28.1 ID=mRNA_P-littoralis_Contig797.28.1|Name=mRNA_P-littoralis_Contig797.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig797:63613..64018- (Pylaiella littoralis U1_48)
CAGGAACGTGCGGCGAGGGGGCTACGCACAGCAGCAACATGGATTTCGCC
AACAGCGTCAGTCGGGTGGGGGCGCAAGGGGGCAAGGGTACTGCAGCAAC
AGCACAACAACGGGGGAGGAGGTCATCAAGTCCCTGAAAGGTATGGTGCT
GGAAGTAGTGGTCCGAGGTGGGCAGACGCGAAAACTTTGCCTGCGTATCA
GGCCCCTGACGGGGGATACAACTACGACAGATACCCGGCGGGCATGTACC
GCCCACAAGGAAATGAACCCCCTATCCACGGGGCGGATCCACGACAGCGG
TGCATCTCGTGTGGTGAGTTTGGACACATTCACCAATTTTGCCCCGCGAG
GACCAAGATACACCCGCCCGATCCCGGTATAGTCCGACAGCCAACCAGCA
ACACC
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