mRNA_P-littoralis_Contig797.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig797.11.1
Unique NamemRNA_P-littoralis_Contig797.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig797.11.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 4.660e-42
Identity = 93/155 (60.00%), Postives = 110/155 (70.97%), Query Frame = 1 
Query:    1 RGQRVPRQVPPTLEQLKGMSRDDVKKRCTTRQLVVLKNAAGIQRGTINSRKEDLLDYLDEYVGGFRCDSGEGAGPNVTDIGLAGGRGXXXXXXNLGESNTSTGGGEMASASCDSTRAEESVEEGREHDDFLSRQIVRDLSLSILDGAGASTGGDS 465
            +G R PRQ PPTL+QLKGMSR +++ RCTT+QLVVL  AA I +GT+NSRK DLLDYL+ +V GFR +   GAGPNVT  GL     XXXXXX  GE NT TG GEMASA  D T  E   ++G +HDDFLSR I  D S S+L+GAG S+G  S
Sbjct:  403 KGGRAPRQAPPTLDQLKGMSRAEIRDRCTTKQLVVLTKAAEIPKGTVNSRKADLLDYLETFVCGFRQEPVGGAGPNVTGTGLXXXXXXXXXXXXAGEGNTLTGSGEMASAGGDFTTEEVPTQDGMDHDDFLSRPIAMDFSRSVLEGAGVSSGSGS 557
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BLAST of mRNA_P-littoralis_Contig797.11.1 vs. uniprot
Match: A0A6H5K7B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B4_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 5.790e-37
Identity = 81/138 (58.70%), Postives = 98/138 (71.01%), Query Frame = 1 
Query:   52 GMSRDDVKKRCTTRQLVVLKNAAGIQRGTINSRKEDLLDYLDEYVGGFRCDSGEGAGPNVTDIGLAGGRGXXXXXXNLGESNTSTGGGEMASASCDSTRAEESVEEGREHDDFLSRQIVRDLSLSILDGAGASTGGDS 465
            GMS  +++ RCTT+QLVVL  AA I +GT+NSR+EDLLD+L+ +V GFR +   GAGPNVT  GLA    XXXXX N GE NT TG GEMASA  D T  E   ++G +HDDFLSR I  D+SLS L+GAG S+G  S
Sbjct:   84 GMSGAEIRDRCTTKQLVVLMKAAEIPKGTVNSREEDLLDHLETFVCGFRQEPVGGAGPNVTGTGLAXXXXXXXXXENAGEGNTLTGSGEMASAGGDLTTEEVPTQDGMDHDDFLSRPIAMDISLSALEGAGVSSGSGS 221
[Close]
BLAST of mRNA_P-littoralis_Contig797.11.1 vs. uniprot
Match: A0A6H5K5B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5B1_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 5.810e-21
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:   19 RQVPPTLEQLKGMSRDDVKKRCTTRQLVVLKNAAGIQRGTINSRKEDLLDYLDEYVGGFRCDSGEGAGPNVTDIGLA 249
            RQ PPTL QLKGMSR D+  RCT RQL++L   AGI++GT+NSR++DLLDYL  YVGGF  +S EGAGP+ T  G A
Sbjct:  238 RQAPPTLNQLKGMSRVDISDRCTVRQLLLLVKDAGIKKGTMNSRQDDLLDYLAAYVGGFGQESVEGAGPSATGSGPA 314
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig797.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K201_9PHAE4.660e-4260.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7B4_9PHAE5.790e-3758.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5B1_9PHAE5.810e-2163.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig797contigP-littoralis_Contig797:37828..38295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size469
Hectar predicted targeting categoryother localisation
Exons1
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791627.6112666-CDS-P-littoralis_Contig797:37827..382951680791627.6112666-CDS-P-littoralis_Contig797:37827..38295Pylaiella littoralis U1_48CDSP-littoralis_Contig797 37828..38295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig797.11.1prot_P-littoralis_Contig797.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig797 37828..38295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig797.11.1

>prot_P-littoralis_Contig797.11.1 ID=prot_P-littoralis_Contig797.11.1|Name=mRNA_P-littoralis_Contig797.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
RGQRVPRQVPPTLEQLKGMSRDDVKKRCTTRQLVVLKNAAGIQRGTINSR
KEDLLDYLDEYVGGFRCDSGEGAGPNVTDIGLAGGRGGGRGGENLGESNT
STGGGEMASASCDSTRAEESVEEGREHDDFLSRQIVRDLSLSILDGAGAS
TGGDS*
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mRNA from alignment at P-littoralis_Contig797:37828..38295+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig797.11.1 ID=mRNA_P-littoralis_Contig797.11.1|Name=mRNA_P-littoralis_Contig797.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig797:37828..38295+ (Pylaiella littoralis U1_48)
AGGGGGCAGCGGGTGCCGCGGCAGGTCCCGCCCACGCTCGAGCAGTTGAA
GGGCATGTCCAGGGACGACGTTAAGAAAAGATGCACCACAAGACAACTTG
TCGTGCTCAAAAATGCCGCGGGGATTCAGAGGGGCACTATCAACTCGAGG
AAGGAGGATCTACTCGATTACCTCGACGAGTATGTGGGCGGGTTCAGATG
TGACTCGGGCGAAGGGGCAGGCCCCAACGTGACCGACATCGGGCTAGCAG
GGGGTCGTGGCGGGGGGCGTGGTGGTGAGAACCTGGGTGAGAGCAACACC
TCGACAGGTGGTGGTGAGATGGCCTCTGCCAGTTGTGATTCGACGAGGGC
GGAAGAATCTGTGGAGGAGGGGAGGGAACACGACGATTTTCTATCCCGAC
AGATTGTAAGGGATTTGTCGCTGTCGATTTTGGACGGGGCGGGTGCGTCT
ACCGGGGGTGATTCGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig797:37828..38295+

>mRNA_P-littoralis_Contig797.11.1 ID=mRNA_P-littoralis_Contig797.11.1|Name=mRNA_P-littoralis_Contig797.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig797:37828..38295+ (Pylaiella littoralis U1_48)
AGGGGGCAGCGGGTGCCGCGGCAGGTCCCGCCCACGCTCGAGCAGTTGAA
GGGCATGTCCAGGGACGACGTTAAGAAAAGATGCACCACAAGACAACTTG
TCGTGCTCAAAAATGCCGCGGGGATTCAGAGGGGCACTATCAACTCGAGG
AAGGAGGATCTACTCGATTACCTCGACGAGTATGTGGGCGGGTTCAGATG
TGACTCGGGCGAAGGGGCAGGCCCCAACGTGACCGACATCGGGCTAGCAG
GGGGTCGTGGCGGGGGGCGTGGTGGTGAGAACCTGGGTGAGAGCAACACC
TCGACAGGTGGTGGTGAGATGGCCTCTGCCAGTTGTGATTCGACGAGGGC
GGAAGAATCTGTGGAGGAGGGGAGGGAACACGACGATTTTCTATCCCGAC
AGATTGTAAGGGATTTGTCGCTGTCGATTTTGGACGGGGCGGGTGCGTCT
ACCGGGGGTGATTCGTGA
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