mRNA_P-littoralis_Contig797.9.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig797.9.2
Unique NamemRNA_P-littoralis_Contig797.9.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig797.9.2 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 1.000e-63
Identity = 106/176 (60.23%), Postives = 126/176 (71.59%), Query Frame = 1 
Query:   37 FEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQTWINDPSVLEAGFKTAREEIALHYLCCIINHVEEELYNFFVEERKNAIAIKLEYPSQKYLIAKPRARV 564
            F D+ +    N+ A+ +   +  GL GDT+R V+ V +RGDALFNGRLDWLG LWA VKGL PT  LI+A W G+VDG AA+ HRKADTK ATAFTL RFA W  RLQ WI+ P VLE GFK    + ALHYL CIIN V +ELYNF VEERK A AIK+ YPS +YLI++ R +V
Sbjct:   92 FGDIQDNTPANDAARGMRTLLVGGLHGDTNRVVAAVHKRGDALFNGRLDWLGELWAVVKGLQPTADLILARWKGHVDGTAAVSHRKADTKAATAFTLARFADWPGRLQAWIDHPDVLERGFKMYPTKKALHYLSCIINQVAQELYNFLVEERKRANAIKVLYPSTQYLISQSRGQV 267
[Close]
BLAST of mRNA_P-littoralis_Contig797.9.2 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 2.250e-50
Identity = 94/168 (55.95%), Postives = 108/168 (64.29%), Query Frame = 1 
Query:   64 VNELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQTWINDPSVLEAGFKTAREEIALHYLCCIINHVEEELYNFFVEERKNAIAIK-LEYPSQKYLIAKPRARV 564
            V  +  N+ + I  GLRGDTD  +  V ERGD LFN R  WLGPLW +VKGL PT  LI   W G+VDG+AAL+HRKADT  A AFTL RFAGW  RL  WIN P VLE GFK   EE ALHYL CIINHVEE      V ER      +    PS++Y I++PR +V
Sbjct:   18 VQNVRVNVRSQIARGLRGDTDDVIKKVRERGDDLFNRRKSWLGPLWEKVKGLAPTARLISEAWNGHVDGVAALKHRKADTMAAAAFTLARFAGWEGRLTAWINQPEVLEQGFKMYPEEKALHYLSCIINHVEEVGVVQGVHERAEEFRGRGALVPSERYQISRPRGQV 185
[Close]
BLAST of mRNA_P-littoralis_Contig797.9.2 vs. uniprot
Match: A0A6H5KFA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFA5_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 2.580e-50
Identity = 89/153 (58.17%), Postives = 103/153 (67.32%), Query Frame = 1 
Query:    7 EAAVQYMRGAFEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALF-NGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQTWINDPSVLEAGFKTAREEIALHYLCCIINHVEE 462
            E   + ++GA +D P    +  L   + + I  GLRGD D     V ER D LF  GR  WLGPLW +VK LPPTT LI   W G+VDG+AALEHRKADTK ATAFTLTRFAGW  RL+ WI+ P VLEAG +  +EE ALHYL CIINHVEE
Sbjct:    4 EHIARCIQGAKDDDPF---LQNLRVYVRSQIASGLRGDLDGVKKKVWERVDPLFFEGRRRWLGPLWKKVKDLPPTTRLIPDAWNGHVDGVAALEHRKADTKAATAFTLTRFAGWEGRLRAWISQPEVLEAGLQDYQEERALHYLSCIINHVEE 153
[Close]
BLAST of mRNA_P-littoralis_Contig797.9.2 vs. uniprot
Match: A0A6H5K4F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4F6_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 5.590e-40
Identity = 77/134 (57.46%), Postives = 87/134 (64.93%), Query Frame = 1 
Query:   64 VNELAQNIANHIEDGLRGDTDRAVSVVLERGDALF-NGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQTWINDPSVLEAGFKTAREEIALHYLCCIINHVEE 462
            V  L   + + I  GLRG  D     V ER D LF  GR  WLGPLW +V+ L PTT LI   W G+VDG+AA EHRKADTK ATA TLT  AGW  RL+ WI+ P VLEAG +  +EE  LHYL CIINHVEE
Sbjct:  175 VQNLWVYVRSQIASGLRGGLDGVKRKVWERVDPLFFEGRRRWLGPLWKKVEDLAPTTRLISDAWNGHVDGVAAFEHRKADTKAATASTLTLNAGWEGRLRAWISQPEVLEAGLRDYQEEKELHYLSCIINHVEE 308
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig797.9.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JIR5_9PHAE1.000e-6360.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K201_9PHAE2.250e-5055.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFA5_9PHAE2.580e-5058.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4F6_9PHAE5.590e-4057.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig797contigP-littoralis_Contig797:36017..37130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size564
Hectar predicted targeting categoryother localisation
Exons3
Cds size540
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791627.5376146-UTR-P-littoralis_Contig797:36016..360401680791627.5376146-UTR-P-littoralis_Contig797:36016..36040Pylaiella littoralis U1_48UTRP-littoralis_Contig797 36017..36040 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791627.5527098-CDS-P-littoralis_Contig797:36040..360671680791627.5527098-CDS-P-littoralis_Contig797:36040..36067Pylaiella littoralis U1_48CDSP-littoralis_Contig797 36041..36067 +
1680791627.5644054-CDS-P-littoralis_Contig797:36278..366891680791627.5644054-CDS-P-littoralis_Contig797:36278..36689Pylaiella littoralis U1_48CDSP-littoralis_Contig797 36279..36689 +
1680791627.575455-CDS-P-littoralis_Contig797:37028..371301680791627.575455-CDS-P-littoralis_Contig797:37028..37130Pylaiella littoralis U1_48CDSP-littoralis_Contig797 37029..37130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig797.9.2prot_P-littoralis_Contig797.9.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig797 36041..37130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig797.9.2

>prot_P-littoralis_Contig797.9.2 ID=prot_P-littoralis_Contig797.9.2|Name=mRNA_P-littoralis_Contig797.9.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=180bp
MRGAFEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNG
RLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFT
LTRFAGWGERLQTWINDPSVLEAGFKTAREEIALHYLCCIINHVEEELYN
FFVEERKNAIAIKLEYPSQKYLIAKPRARV
back to top

mRNA from alignment at P-littoralis_Contig797:36017..37130+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig797.9.2 ID=mRNA_P-littoralis_Contig797.9.2|Name=mRNA_P-littoralis_Contig797.9.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1114bp|location=Sequence derived from alignment at P-littoralis_Contig797:36017..37130+ (Pylaiella littoralis U1_48)
ACCGACGAGGCGGCTGTCCAATACATGCGTGGTGCTTTCGAGGATGTTCC
GGTGAGAATGGCAGTGCATATTGTTGCCTGCTCGCACATTTCAGACATCA
TGCAGCCAATGTTTCCTTTTGGTGTGACCTCGCATAGTCAGACTGGCACT
TGTTGTTTCACTTGTGTTTCATCACCATCGCAACGAGAGCCTGTTTGGGA
TGATATTTTCAATCGCTTTTATCTTTTGTTTGTCCGCGGCCGTGTGGTTG
ACGATGAAGCAGAATGCTGGCAAGGTCAACGAGCTGGCCCAGAACATTGC
GAACCATATCGAGGACGGTCTTCGCGGGGACACAGATCGTGCCGTGTCGG
TGGTGCTTGAGAGAGGGGACGCCCTCTTCAACGGGCGTCTCGACTGGCTC
GGTCCGCTTTGGGCGGAGGTCAAAGGTCTTCCTCCTACAACGCACTTGAT
TGTCGCGTGTTGGACGGGCTATGTGGACGGACTCGCCGCCCTGGAACACC
GTAAGGCTGATACTAAGACGGCGACAGCGTTCACCTTGACCCGTTTTGCT
GGCTGGGGGGAGAGACTCCAAACCTGGATAAACGACCCCAGTGTGTTGGA
GGCAGGGTTCAAGACAGCGCGGGAGGAGATTGCATTGCACTACCTATGCT
GCATCATCAATCACGTGGAGGAGGTGGGTTGATGCGGTGGTCAATAGGAA
GTGAGGAAGACATACCAGACGAAATTTGCCCAAGGATTACAATCTCCTTT
CCGCAGCCGTAGTTGACTAAGACATAAACTCCATCCTCCCTCGGTACGTT
ACAGCGCTGTGTATTTTGTATCGTCGGGGTACGCTATCTTTCTGATTCCT
TGTGTGTTGGAGCAATCATCGCTCCGAGCGCTTAGTTTTGGAGACAACCA
TTCTGATTTTCTCTTCTATAGCTTGGACTCGACGGCCACGTAGCTGAGGC
ACCCTCCCCGTGCCCGCGCTCCTCTCCTCGAACCGCTCCCCGTCCCCCCC
CCGTTGCTGCAGGAGTTGTACAACTTCTTCGTGGAAGAGCGGAAAAATGC
CATCGCCATCAAGCTCGAGTACCCGAGTCAAAAATATCTGATTGCAAAAC
CGCGCGCGAGAGTC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig797:36017..37130+

>mRNA_P-littoralis_Contig797.9.2 ID=mRNA_P-littoralis_Contig797.9.2|Name=mRNA_P-littoralis_Contig797.9.2|organism=Pylaiella littoralis U1_48|type=CDS|length=540bp|location=Sequence derived from alignment at P-littoralis_Contig797:36017..37130+ (Pylaiella littoralis U1_48)
ATGCGTGGTGCTTTCGAGGATGTTCCGAATGCTGGCAAGGTCAACGAGCT
GGCCCAGAACATTGCGAACCATATCGAGGACGGTCTTCGCGGGGACACAG
ATCGTGCCGTGTCGGTGGTGCTTGAGAGAGGGGACGCCCTCTTCAACGGG
CGTCTCGACTGGCTCGGTCCGCTTTGGGCGGAGGTCAAAGGTCTTCCTCC
TACAACGCACTTGATTGTCGCGTGTTGGACGGGCTATGTGGACGGACTCG
CCGCCCTGGAACACCGTAAGGCTGATACTAAGACGGCGACAGCGTTCACC
TTGACCCGTTTTGCTGGCTGGGGGGAGAGACTCCAAACCTGGATAAACGA
CCCCAGTGTGTTGGAGGCAGGGTTCAAGACAGCGCGGGAGGAGATTGCAT
TGCACTACCTATGCTGCATCATCAATCACGTGGAGGAGGAGTTGTACAAC
TTCTTCGTGGAAGAGCGGAAAAATGCCATCGCCATCAAGCTCGAGTACCC
GAGTCAAAAATATCTGATTGCAAAACCGCGCGCGAGAGTC
back to top