mRNA_P-littoralis_Contig796.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig796.41.1
Unique NamemRNA_P-littoralis_Contig796.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig796.41.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.110e-24
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 1 
Query:    1 RGQRVPRQVPPTLEQLKGMSRDDVKKRCTTRQLVVLKNAAGIQRGTINSRKEDLLDYLDEYVGGFRCDSGEGAGPNVTDIGL 246
            +G R PRQ PPTL+QLKGMSR +++ RCTT+QLVVL  AA I +GT+NSRK DLLDYL+ +V GFR +   GAGPNVT  GL
Sbjct:  403 KGGRAPRQAPPTLDQLKGMSRAEIRDRCTTKQLVVLTKAAEIPKGTVNSRKADLLDYLETFVCGFRQEPVGGAGPNVTGTGL 484
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BLAST of mRNA_P-littoralis_Contig796.41.1 vs. uniprot
Match: A0A6H5K5B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5B1_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 3.070e-22
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:   19 RQVPPTLEQLKGMSRDDVKKRCTTRQLVVLKNAAGIQRGTINSRKEDLLDYLDEYVGGFRCDSGEGAGPNVTDIGLA 249
            RQ PPTL QLKGMSR D+  RCT RQL++L   AGI++GT+NSR++DLLDYL  YVGGF  +S EGAGP+ T  G A
Sbjct:  238 RQAPPTLNQLKGMSRVDISDRCTVRQLLLLVKDAGIKKGTMNSRQDDLLDYLAAYVGGFGQESVEGAGPSATGSGPA 314
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig796.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K201_9PHAE1.110e-2464.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5B1_9PHAE3.070e-2263.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig796contigP-littoralis_Contig796:122517..122768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size253
Hectar predicted targeting categoryother localisation
Exons1
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791627.2434049-CDS-P-littoralis_Contig796:122516..1227681680791627.2434049-CDS-P-littoralis_Contig796:122516..122768Pylaiella littoralis U1_48CDSP-littoralis_Contig796 122517..122768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig796.41.1prot_P-littoralis_Contig796.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig796 122517..122768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig796.41.1

>prot_P-littoralis_Contig796.41.1 ID=prot_P-littoralis_Contig796.41.1|Name=mRNA_P-littoralis_Contig796.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=84bp
RGQRVPRQVPPTLEQLKGMSRDDVKKRCTTRQLVVLKNAAGIQRGTINSR
KEDLLDYLDEYVGGFRCDSGEGAGPNVTDIGLAG
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mRNA from alignment at P-littoralis_Contig796:122517..122768+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig796.41.1 ID=mRNA_P-littoralis_Contig796.41.1|Name=mRNA_P-littoralis_Contig796.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=252bp|location=Sequence derived from alignment at P-littoralis_Contig796:122517..122768+ (Pylaiella littoralis U1_48)
AGGGGGCAGCGGGTGCCGCGGCAGGTCCCGCCCACGCTCGAGCAGTTGAA
GGGCATGTCCAGGGACGACGTTAAGAAAAGATGCACCACAAGACAACTTG
TCGTGCTCAAAAATGCCGCGGGGATTCAGAGGGGCACTATCAACTCGAGG
AAGGAGGATCTACTCGATTACCTCGACGAGTATGTGGGCGGGTTCAGATG
TGACTCGGGCGAAGGGGCAGGCCCCAACGTGACCGACATCGGGCTAGCAG
GG
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Coding sequence (CDS) from alignment at P-littoralis_Contig796:122517..122768+

>mRNA_P-littoralis_Contig796.41.1 ID=mRNA_P-littoralis_Contig796.41.1|Name=mRNA_P-littoralis_Contig796.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=252bp|location=Sequence derived from alignment at P-littoralis_Contig796:122517..122768+ (Pylaiella littoralis U1_48)
AGGGGGCAGCGGGTGCCGCGGCAGGTCCCGCCCACGCTCGAGCAGTTGAA
GGGCATGTCCAGGGACGACGTTAAGAAAAGATGCACCACAAGACAACTTG
TCGTGCTCAAAAATGCCGCGGGGATTCAGAGGGGCACTATCAACTCGAGG
AAGGAGGATCTACTCGATTACCTCGACGAGTATGTGGGCGGGTTCAGATG
TGACTCGGGCGAAGGGGCAGGCCCCAACGTGACCGACATCGGGCTAGCAG
GG
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