prot_P-littoralis_Contig796.7.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig796.7.1
Unique Nameprot_P-littoralis_Contig796.7.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length243
Homology
BLAST of mRNA_P-littoralis_Contig796.7.1 vs. uniprot
Match: A0A6H5KI93_9PHAE (RNB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI93_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 8.600e-107
Identity = 161/191 (84.29%), Postives = 174/191 (91.10%), Query Frame = 0
Query:    1 MSSATTATTPQPHWGLGLASYVQWSSPIRRYLDLLAHYQIKRWLTGQATLEGSAVMGQVEAGDGTVQAANSVMRKTNKYWVTEYLSKLSGSEMEAYVMSYRDTREKGGKVFYNLLLLSLGVTLPYLEAGLSMKLGESVVVKVVTSSSRNLFTKISWRRMSAAEKSAREGRLKDETALAGLPDGGGVAGSVA 191
            MSSATTATTPQPHWGLGL SYVQWSSPIRRYLDLLAHYQ+KRWL GQ TL+GS VM +VEAGDG VQ AN VMRKTNKYWVTEYLSKL GS+MEAYV+SYRD REKGGKV YNLLLL LG+TLPY+EAGLSM+LGE VVV+VV SS+R+LFTKISWRRMS+AE+SA EGRLKDE ALAGLPDGGGV GSVA
Sbjct:  105 MSSATTATTPQPHWGLGLDSYVQWSSPIRRYLDLLAHYQVKRWLLGQPTLDGSLVMAEVEAGDGAVQTANMVMRKTNKYWVTEYLSKLVGSDMEAYVVSYRDAREKGGKVMYNLLLLGLGITLPYMEAGLSMELGELVVVRVVASSARSLFTKISWRRMSSAERSASEGRLKDEAALAGLPDGGGVVGSVA 295          
BLAST of mRNA_P-littoralis_Contig796.7.1 vs. uniprot
Match: D8LLK7_ECTSI (COG0557: Exoribonuclease R n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK7_ECTSI)

HSP 1 Score: 321 bits (823), Expect = 2.260e-101
Identity = 161/191 (84.29%), Postives = 175/191 (91.62%), Query Frame = 0
Query:    1 MSSATTATTPQPHWGLGLASYVQWSSPIRRYLDLLAHYQIKRWLTGQATLEGSAVMGQVEAGDGTVQAANSVMRKTNKYWVTEYLSKLSGSEMEAYVMSYRDTREKGGKVFYNLLLLSLGVTLPYLEAGLSMKLGESVVVKVVTSSSRNLFTKISWRRMSAAEKSAREGRLKDETALAGLPDGGGVAGSVA 191
            MSSATTATTPQPHWGLGL SYVQWSSPIRRYLDLLAHYQ+KRWL GQ TL+GS VM QVEAGDG VQ AN VMRKTNKYWVTEYLSKL GS+MEAYV+SYRD R+KGGKV YNLLLL LG+TLPY+EAGLSM+LGE VVV+VV SS+R+LFTKISWRRMS+AE+SA +GRLKDE ALAGLPDGGGVAGSVA
Sbjct:  578 MSSATTATTPQPHWGLGLDSYVQWSSPIRRYLDLLAHYQVKRWLLGQPTLDGSLVMAQVEAGDGAVQTANMVMRKTNKYWVTEYLSKLVGSDMEAYVVSYRDARDKGGKVMYNLLLLGLGITLPYMEAGLSMELGELVVVRVVASSARSLFTKISWRRMSSAERSASDGRLKDEAALAGLPDGGGVAGSVA 768          
BLAST of mRNA_P-littoralis_Contig796.7.1 vs. uniprot
Match: A0A835Z4Y9_9STRA (RNB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Y9_9STRA)

HSP 1 Score: 145 bits (365), Expect = 5.740e-36
Identity = 70/161 (43.48%), Postives = 106/161 (65.84%), Query Frame = 0
Query:    1 MSSATTATTPQPHWGLGLASYVQWSSPIRRYLDLLAHYQIKRWLTGQATLEGSAVMGQVEAGDGTVQAANSVMRKTNKYWVTEYLSKLSGSEMEAYVMSYRDTREKGGKVFYNLLLLSLGVTLPYLEAGLSMKLGESVVVKVVTSSSRNLFTKISWRRMSA 161
            MS A  +  P  HWGLGL  YVQWSSPIRR+ DL+ H+Q+KRWL GQ  L G+ V   V + +GT+QAAN + R +++YW+ EYL + +     AYV+ Y D RE+GGKV Y++LL  LG  + + E  ++M+ G+++ V V  ++ R++  ++   ++SA
Sbjct:  689 MSGAIVSAEPGIHWGLGLDGYVQWSSPIRRFNDLVVHWQVKRWLHGQTPLSGADVAKLVASQEGTLQAANKIARDSSRYWLIEYLRRTADEPHVAYVLGYNDNRERGGKVIYDILLEELGAVVKHPETSITMEPGDALRVTVAQAAPRSMTLRLRCAKVSA 849          
BLAST of mRNA_P-littoralis_Contig796.7.1 vs. uniprot
Match: A0A7S3UTG6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTG6_HETAK)

HSP 1 Score: 110 bits (275), Expect = 2.350e-26
Identity = 60/156 (38.46%), Postives = 92/156 (58.97%), Query Frame = 0
Query:    1 MSSATTATTPQPHWGLGLASYVQWSSPIRRYLDLLAHYQIKRWLTGQATLEGSA--------VMGQVEAGDGTVQAANSVMRKTNKYWVTEYLSKLSGSEMEAYVMSYRDTREKGGKVFYNLLLLSLGVTLPYLEAGLSMKLGESVVVKVVTSSSR 148
            M  A  +  P+PH GL L  YVQWSSPIRRY DL+ HYQ+K  L   A  EG+A        V+ +  A +GT++ A  +M ++ +YW  E+  +  G   EAYV++  D RE GG++ Y LLL  LG  +PY    ++++LG +  ++++ ++ R
Sbjct:   29 MKPAVVSIHPEPHAGLALDQYVQWSSPIRRYSDLIVHYQLKAHLHSAAA-EGAAPAALGTQEVLAETAALEGTLKHAGQIMGRSRRYWQYEFFRRNIGKVFEAYVLAVWDQREYGGRLTYTLLLPDLGAKIPYQMNEMALELGSTGKLQIIDANPR 183          
BLAST of mRNA_P-littoralis_Contig796.7.1 vs. uniprot
Match: A0A3M1H6E2_9CHLR (RNB domain-containing ribonuclease (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1H6E2_9CHLR)

HSP 1 Score: 83.6 bits (205), Expect = 8.930e-15
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 0
Query:    1 MSSATTATTPQPHWGLGLASYVQWSSPIRRYLDLLAHYQIKRWLTGQATLEGSAVMGQVEAGDGTVQAANSVMRKTNKYWVTEYLSKLSGSEMEAYVMSYRDTR 104
            M+ +  ++ P PH GLGLA Y Q +SP+RRYLDL+ H Q++ WL GQ  L+   ++ +V   +    +   V R +NK+W   YL +L   + EA ++  RD R
Sbjct:  457 MTRSQLSSVPGPHAGLGLARYAQATSPLRRYLDLVMHQQLRAWLKGQPLLDAGDILERVGMAESVTGSVRQVERLSNKHWTLVYLQRLGSWQGEAVLVDRRDLR 560          
BLAST of mRNA_P-littoralis_Contig796.7.1 vs. uniprot
Match: M1X263_9NOST (Exoribonuclease II n=2 Tax=Richelia intracellularis TaxID=1164990 RepID=M1X263_9NOST)

HSP 1 Score: 82.4 bits (202), Expect = 1.890e-14
Identity = 56/141 (39.72%), Postives = 78/141 (55.32%), Query Frame = 0
Query:    9 TPQPHWGLGLASYVQWSSPIRRYLDLLAHYQIKRWLTGQATLEGSAVMGQVEAGDGTV-QAANSVMRKTNKYWVTEYLSKLSGSEMEAYVMSYRDTREKGGKVFYNLLLLSLGVTLPYLEAGLSMKLGESVVVKVVTSSSR 148
            TP  H GLGL +Y Q +SPIRRY DLL H+QIK  L GQ     +  + +V +   ++ Q    V R+TN+YW  EYL + S    +  V+ +   RE  G     +LL  LG+ LP     + +KLGE ++VKV+ S  R
Sbjct:  302 TPLRHAGLGLNTYTQATSPIRRYSDLLTHFQIKAHLRGQTPPFSANKLREVMSNVTSITQEVTMVERQTNRYWALEYLRRYSYETWQTIVLMW--LREDSGLAL--ILLEDLGLQLPMFFKRV-VKLGERILVKVIYSDPR 437          
BLAST of mRNA_P-littoralis_Contig796.7.1 vs. uniprot
Match: K9SD06_9CYAN (Exoribonuclease II n=1 Tax=Geitlerinema sp. PCC 7407 TaxID=1173025 RepID=K9SD06_9CYAN)

HSP 1 Score: 82.4 bits (202), Expect = 2.390e-14
Identity = 56/135 (41.48%), Postives = 76/135 (56.30%), Query Frame = 0
Query:    9 TPQPHWGLGLASYVQWSSPIRRYLDLLAHYQIKRWLTGQATLEGSAVMGQVEAG-DGTVQAANSVMRKTNKYWVTEYLSKLSGSEMEAYVMSYRDTREKGGKVFYNLLLLSLGVTLPYLEAGLSMKLGESVVVKV 142
            TP  H  LGL +Y Q +SPIRRY DLLAH+QIK  L G+ T   S VM +V A    T   A  V R+TN+YW  E+L + +G   +A ++ +    E  G +    LL  LG+ L +     SM+LGE + V+V
Sbjct:  518 TPARHASLGLDTYTQVTSPIRRYTDLLAHFQIKAHLRGEPTPFSSDVMQEVLASVSTTAYEAVLVERQTNRYWGLEFLRRHTGEVWQAMMLRWLREHENLGLI----LLEELGLELAW-RPSRSMELGERIQVRV 647          
BLAST of mRNA_P-littoralis_Contig796.7.1 vs. uniprot
Match: A0A8J6RUD0_9CYAN (VacB/RNase II family 3'-5' exoribonuclease n=9 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J6RUD0_9CYAN)

HSP 1 Score: 81.6 bits (200), Expect = 4.390e-14
Identity = 56/143 (39.16%), Postives = 81/143 (56.64%), Query Frame = 0
Query:    7 ATTPQPHWGLGLASYVQWSSPIRRYLDLLAHYQIKRWLTGQATLEGSAVMGQVEAGDGTV-QAANSVMRKTNKYWVTEYLSKLSGSEMEAYVMSYRDTREKGGKVFYNLLLLSLGVTLPYLEAGLSMKLGESVVVKVVTSSSR 148
            +TTP  H GLGL +Y Q +SPIRRY DLLAH+Q+K  L G+ T   +  + +V  G GT  Q A  V R+TN+YW  EYL + +    +A ++ +    ++ G +    LL  LG+ L  +    S+KLG+ + V V  S  R
Sbjct:  530 STTPGRHAGLGLETYTQVTSPIRRYSDLLAHFQLKAHLRGEPTPFSAQELQEVMLGIGTAAQEARLVERQTNRYWGLEYLRRHADQVWQALMLRWLREDDRLGLI----LLEDLGLELA-MRFTKSVKLGDRLSVSVSHSDPR 667          
BLAST of mRNA_P-littoralis_Contig796.7.1 vs. uniprot
Match: A0A2N5JRS2_9CYAN (RNB domain-containing ribonuclease n=1 Tax=Cyanobacteria bacterium M5B4 TaxID=2054928 RepID=A0A2N5JRS2_9CYAN)

HSP 1 Score: 81.3 bits (199), Expect = 5.870e-14
Identity = 56/143 (39.16%), Postives = 79/143 (55.24%), Query Frame = 0
Query:    1 MSSATTATTPQPHWGLGLASYVQWSSPIRRYLDLLAHYQIKRWLTGQATLEGSAVMGQVEAG-DGTVQAANSVMRKTNKYWVTEYLSKLSGSEMEAYVMSYRDTREKGGKVFYNLLLLSLGVTLPYLEAGLSMKLGESVVVKV 142
            MS +  +  PQPH GLGL++YVQ +SPIRRY DL+ HYQIK  L GQ  L  S  + ++ A  D     A  V R+TN+YW  E+L     S  +A  + +    +K G +    LL  +G+ LP ++    +  GE + VKV
Sbjct:  503 MSRSEVSLEPQPHAGLGLSAYVQATSPIRRYSDLIVHYQIKAALLGQPPLFTSEQVQEIIALIDVAAYDALQVERQTNRYWSLEFLRCHQDSVWQALFLDWLRENDKLGLI----LLEEIGLKLP-IKLNRQVNKGEHLQVKV 640          
BLAST of mRNA_P-littoralis_Contig796.7.1 vs. uniprot
Match: K8EJU2_9CHLO (Ribonuclease II n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EJU2_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 8.280e-14
Identity = 55/146 (37.67%), Postives = 81/146 (55.48%), Query Frame = 0
Query:    1 MSSATTATTPQPHWGLGLASYVQWSSPIRRYLDLLAHYQIKRWL-TGQATLEGSAVMGQVEAGDGTVQAANSV--MRKTNKYWVTEYLSKLSGSEMEAYVMSYRDTREKGGKVFYNLLLLSLGVTLPY-LEAGLSMKLGESVVVKV 142
            M++++   TP+PH  LGL++YVQ++SPIRRY DLLAHYQIK +L +G+ + E S    ++   +    A+  +   R+ +KYWVTEY S+  GS    Y  +    +      F   LL   G   P+ L      KLG +V +KV
Sbjct:  580 MTASSQGITPRPHHSLGLSAYVQFTSPIRRYADLLAHYQIKSYLRSGRHSSEISNEKLELVLSEAGANASVGIKTQREISKYWVTEYFSRQMGSADNIYEATV--VKSMRSDAFALALLEDTGFETPFKLLRENDFKLGTTVKIKV 723          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig796.7.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI93_9PHAE8.600e-10784.29RNB domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LLK7_ECTSI2.260e-10184.29COG0557: Exoribonuclease R n=1 Tax=Ectocarpus sili... [more]
A0A835Z4Y9_9STRA5.740e-3643.48RNB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3UTG6_HETAK2.350e-2638.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A3M1H6E2_9CHLR8.930e-1538.46RNB domain-containing ribonuclease (Fragment) n=1 ... [more]
M1X263_9NOST1.890e-1439.72Exoribonuclease II n=2 Tax=Richelia intracellulari... [more]
K9SD06_9CYAN2.390e-1441.48Exoribonuclease II n=1 Tax=Geitlerinema sp. PCC 74... [more]
A0A8J6RUD0_9CYAN4.390e-1439.16VacB/RNase II family 3'-5' exoribonuclease n=9 Tax... [more]
A0A2N5JRS2_9CYAN5.870e-1439.16RNB domain-containing ribonuclease n=1 Tax=Cyanoba... [more]
K8EJU2_9CHLO8.280e-1437.67Ribonuclease II n=1 Tax=Bathycoccus prasinos TaxID... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001900Ribonuclease II/RPFAMPF00773RNBcoord: 1..45
e-value: 1.4E-12
score: 47.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..242
NoneNo IPR availablePANTHERPTHR23355RIBONUCLEASEcoord: 1..146
NoneNo IPR availablePANTHERPTHR23355:SF42EXORIBONUCLEASE II, MITOCHONDRIALcoord: 1..146
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 1..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig796contigP-littoralis_Contig796:12336..16759 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig796.7.1mRNA_P-littoralis_Contig796.7.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig796 11827..17165 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig796.7.1 ID=prot_P-littoralis_Contig796.7.1|Name=mRNA_P-littoralis_Contig796.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=243bp
MSSATTATTPQPHWGLGLASYVQWSSPIRRYLDLLAHYQIKRWLTGQATL
EGSAVMGQVEAGDGTVQAANSVMRKTNKYWVTEYLSKLSGSEMEAYVMSY
RDTREKGGKVFYNLLLLSLGVTLPYLEAGLSMKLGESVVVKVVTSSSRNL
FTKISWRRMSAAEKSAREGRLKDETALAGLPDGGGVAGSVASSGKKNGGG
EANAAGGDPSFAGGGAAAAVGGGGGDSSGAGAAADATRTRWP*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001900RNase_II/R
IPR012340NA-bd_OB-fold