mRNA_P-littoralis_Contig791.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig791.1.1
Unique NamemRNA_P-littoralis_Contig791.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig791.1.1 vs. uniprot
Match: Q8QN98_ESV1K (EsV-1-191 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN98_ESV1K)

HSP 1 Score: 305 bits (780), Expect = 6.750e-96
Identity = 175/359 (48.75%), Postives = 227/359 (63.23%), Query Frame = 1 
Query:    1 MTICVKCSEPFSDQ-SKYGIRLTLICVECAASTQLVTKTSAMASGARSKDLDNLDHCRHINPYRRRAPLSALFIGVEVNHIANIANRDREARKMKRRSKAEXXXAAKRTRQDEREQCRQKRIQGASSRINTKEAPAPGLVSGDFLTIATKTPKVSITKLSKRGALGSEPR---VSTRVNLFRFACHRGLYSSTPGELESDVDDLHHTLDKVVLTEGHRLMTFLTPMERFHLCRAVLSAAEESRELQVTAVCDGLYDLCQHASEKL-----ADPEMRKRVLGRTSKLNWAAVHAFLVSKRGQIIPGRIEHYGVSRVFDMICTETPERKRR-QLFDCIERLGLEGGRLHHRVYAALLEKYV 1047
            M  C KC+EPF    S  GI LT +C  C  ST+L+TKTSAM+ GAR +DLD LDH R  NPY R A  + LF+  EV ++A IAN DRE R+  R+ K E    AKR + D+R +C +KRIQ A+S+I T   P PGLVSGDF T  TKTPK+S+ KL+KR A+ S      +S RVNLFRF C   LY+ +  E+ES V ++HH+LD+VVL EG+R++ FLTPMER H+ RAV    +E   L V+A+ D +Y LCQ+ S KL       P  RKRV G +++  W  V+ FL+SK G +IP RI  YGVSRVFDM+C E+    R   +++C  RLG+      HR    L  KY+
Sbjct:    1 MPTCGKCAEPFVGHLSINGITLTRVCEGCLVSTELLTKTSAMSLGARVEDLDRLDHRREPNPYYRNAASTYLFLEEEVKYVAGIANADRERRECARKCKEEIQARAKRMKHDDRARCLEKRIQSATSKIKTVSPPTPGLVSGDFCTSTTKTPKISVAKLAKRVAIWSSLNNFSLSHRVNLFRFGCANELYTFSGKEIESSVQNVHHSLDRVVLREGNRVLEFLTPMERLHVSRAVPFTHQELHGLPVSAMSDDMYALCQYTSAKLEKMRSTHPVKRKRVFGSSTRALWNEVYEFLLSKSGHVIPTRIGFYGVSRVFDMLCRESVYGSRSGNVYNCFARLGMPSP--PHRFLQTLSVKYI 357
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BLAST of mRNA_P-littoralis_Contig791.1.1 vs. uniprot
Match: D8LPL0_ECTSI (EsV-1-191 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL0_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 1.410e-92
Identity = 174/359 (48.47%), Postives = 224/359 (62.40%), Query Frame = 1 
Query:    1 MTICVKCSEPFSDQ-SKYGIRLTLICVECAASTQLVTKTSAMASGARSKDLDNLDHCRHINPYRRRAPLSALFIGVEVNHIANIANRDREARKMKRRSKAEXXXAAKRTRQDEREQCRQKRIQGASSRINTKEAPAPGLVSGDFLTIATKTPKVSITKLSKRGALG---SEPRVSTRVNLFRFACHRGLYSSTPGELESDVDDLHHTLDKVVLTEGHRLMTFLTPMERFHLCRAVLSAAEESRELQVTAVCDGLYDLCQHASEKL-----ADPEMRKRVLGRTSKLNWAAVHAFLVSKRGQIIPGRIEHYGVSRVFDMICTETPERKRRQ-LFDCIERLGLEGGRLHHRVYAALLEKYV 1047
            M  C KC+EPF D  S  GI LT +C  C  ST+L+TKTSAM+ GAR +DLD LDH R  NPY R A  + LF+  EV ++A IAN  RE R+  R+SK E    AKR + D+R +C +KRIQ A+SRI     P PGLVSGDF T ATKTPK+S+ KL+KR A+    S   +  RVNLFRF C   LY+ +  E+ES V   H++LDKVVL EG+R++ FL+PMER H  RAV S  +E   L V+A+ D +Y LCQ+ S KL       P  RKR+ GR ++  W  V+ FL+S+ G +IP +I  YGV RVFDM+C E   R R   +++C  RLG+      HR    L  KY+
Sbjct:    1 MPTCGKCAEPFVDHLSINGITLTRVCEGCLVSTELLTKTSAMSLGARVEDLDRLDHRREPNPYYRNAASTYLFLEEEVKYVAGIANAARERRECARKSKEEIQSRAKRMKHDDRSKCLEKRIQTATSRIKPVGPPTPGLVSGDFCTSATKTPKISVAKLAKRVAIWRSLSNLSLPPRVNLFRFGCANELYALSGEEIESAVASAHYSLDKVVLGEGNRVLQFLSPMERLHATRAVPSMHQELHGLPVSAMSDDMYALCQYTSVKLEKMRSTQPVKRKRLFGRNTRAVWNDVYQFLLSRSGHVIPTKIGFYGVPRVFDMLCREAVHRTRSDNVYNCFARLGMPLP--PHRFLQTLSGKYI 357
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig791.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QN98_ESV1K6.750e-9648.75EsV-1-191 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPL0_ECTSI1.410e-9248.47EsV-1-191 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig791contigP-littoralis_Contig791:2825..4149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1313
Hectar predicted targeting categoryother localisation
Exons2
Cds size1065
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791621.633333-UTR-P-littoralis_Contig791:2824..30721680791621.633333-UTR-P-littoralis_Contig791:2824..3072Pylaiella littoralis U1_48UTRP-littoralis_Contig791 2825..3072 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791621.6479952-CDS-P-littoralis_Contig791:3072..36541680791621.6479952-CDS-P-littoralis_Contig791:3072..3654Pylaiella littoralis U1_48CDSP-littoralis_Contig791 3073..3654 -
1680791621.659922-CDS-P-littoralis_Contig791:3666..41491680791621.659922-CDS-P-littoralis_Contig791:3666..4149Pylaiella littoralis U1_48CDSP-littoralis_Contig791 3667..4149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig791.1.1prot_P-littoralis_Contig791.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig791 3073..4149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig791.1.1

>prot_P-littoralis_Contig791.1.1 ID=prot_P-littoralis_Contig791.1.1|Name=mRNA_P-littoralis_Contig791.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=355bp
MTICVKCSEPFSDQSKYGIRLTLICVECAASTQLVTKTSAMASGARSKDL
DNLDHCRHINPYRRRAPLSALFIGVEVNHIANIANRDREARKMKRRSKAE
SKAAAKRTRQDEREQCRQKRIQGASSRINTKEAPAPGLVSGDFLTIATKT
PKVSITKLSKRGALGSEPRVSTRVNLFRFACHRGLYSSTPGELESDVDDL
HHTLDKVVLTEGHRLMTFLTPMERFHLCRAVLSAAEESRELQVTAVCDGL
YDLCQHASEKLADPEMRKRVLGRTSKLNWAAVHAFLVSKRGQIIPGRIEH
YGVSRVFDMICTETPERKRRQLFDCIERLGLEGGRLHHRVYAALLEKYVK
TTAS*
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mRNA from alignment at P-littoralis_Contig791:2825..4149-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig791.1.1 ID=mRNA_P-littoralis_Contig791.1.1|Name=mRNA_P-littoralis_Contig791.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1325bp|location=Sequence derived from alignment at P-littoralis_Contig791:2825..4149- (Pylaiella littoralis U1_48)
ATGACCATTTGTGTAAAATGTTCAGAACCTTTTAGCGATCAGTCTAAATA
CGGGATCCGGTTGACACTGATTTGTGTCGAATGTGCCGCCTCAACTCAAC
TCGTCACGAAAACGTCGGCGATGGCCTCGGGAGCGAGGTCCAAAGACCTG
GACAATCTCGACCATTGCCGGCACATCAATCCTTACCGCAGGAGAGCCCC
CCTGTCGGCCCTGTTCATCGGCGTCGAGGTTAATCATATCGCAAACATCG
CGAACAGGGACCGAGAGGCTAGAAAAATGAAGCGACGGTCGAAAGCGGAG
AGCAAGGCTGCGGCGAAGAGGACGAGACAGGACGAACGAGAGCAATGTAG
GCAGAAGAGGATCCAAGGCGCCTCGTCACGGATCAACACGAAGGAGGCTC
CTGCTCCGGGGCTCGTGAGCGGCGATTTCTTAACGATCGCCACCAAAACC
CCGAAGGTTTCGATCACGAAATTGTCGAAGCGCGTGAAGCTCTAGGGAGC
TCTTGGGAGCGAGCCCCGTGTGTCGACAAGGGTAAACCTTTTCCGTTTCG
CGTGCCACAGGGGCCTCTACTCTTCCACACCAGGCGAGCTGGAATCGGAT
GTGGACGACCTGCACCACACGCTAGACAAGGTAGTGCTCACCGAGGGTCA
CCGACTGATGACGTTTCTCACTCCGATGGAACGGTTCCACTTGTGCAGAG
CCGTGCTGTCGGCGGCGGAGGAGTCTCGCGAGCTGCAGGTGACCGCCGTG
TGCGACGGCCTGTACGATCTCTGTCAACACGCCAGTGAGAAGCTGGCGGA
TCCCGAAATGAGGAAACGGGTGCTGGGAAGGACATCCAAACTAAATTGGG
CGGCCGTGCACGCGTTCCTCGTCTCGAAACGTGGCCAGATCATCCCGGGC
AGGATCGAGCACTACGGTGTTTCCCGGGTGTTCGACATGATTTGCACCGA
AACCCCGGAACGGAAGAGAAGACAGCTCTTCGACTGTATCGAGAGGCTGG
GGCTGGAGGGTGGGAGGCTGCACCACAGAGTCTACGCGGCGTTGCTAGAG
AAGTACGTGAAAACCACCGCCTCGTAGACTTTGAGTGCATCGAACATATC
ATCCGGATTTTCGGCGGGAGGAGGGTTTTGCAGTTGAATGCCTCGCGCCA
ATTCGATCTTCTCTTTATGAAAATGAATCGGATGGTCTACGAGGAGGGAA
ATACCTGGGGAGAGGCAGCGGACGGAGCAGCCGACGGCCTGGTTCCGCCG
GGGTGGTGCAAGTGCGGCCACTCTTCCGCTAAACACTGTGTTGCGAGCAT
GTGTAGGCCGTGTTGCCGGGCGTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig791:2825..4149-

>mRNA_P-littoralis_Contig791.1.1 ID=mRNA_P-littoralis_Contig791.1.1|Name=mRNA_P-littoralis_Contig791.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1065bp|location=Sequence derived from alignment at P-littoralis_Contig791:2825..4149- (Pylaiella littoralis U1_48)
ATGACCATTTGTGTAAAATGTTCAGAACCTTTTAGCGATCAGTCTAAATA
CGGGATCCGGTTGACACTGATTTGTGTCGAATGTGCCGCCTCAACTCAAC
TCGTCACGAAAACGTCGGCGATGGCCTCGGGAGCGAGGTCCAAAGACCTG
GACAATCTCGACCATTGCCGGCACATCAATCCTTACCGCAGGAGAGCCCC
CCTGTCGGCCCTGTTCATCGGCGTCGAGGTTAATCATATCGCAAACATCG
CGAACAGGGACCGAGAGGCTAGAAAAATGAAGCGACGGTCGAAAGCGGAG
AGCAAGGCTGCGGCGAAGAGGACGAGACAGGACGAACGAGAGCAATGTAG
GCAGAAGAGGATCCAAGGCGCCTCGTCACGGATCAACACGAAGGAGGCTC
CTGCTCCGGGGCTCGTGAGCGGCGATTTCTTAACGATCGCCACCAAAACC
CCGAAGGTTTCGATCACGAAATTGTCGAAGCGCGGAGCTCTTGGGAGCGA
GCCCCGTGTGTCGACAAGGGTAAACCTTTTCCGTTTCGCGTGCCACAGGG
GCCTCTACTCTTCCACACCAGGCGAGCTGGAATCGGATGTGGACGACCTG
CACCACACGCTAGACAAGGTAGTGCTCACCGAGGGTCACCGACTGATGAC
GTTTCTCACTCCGATGGAACGGTTCCACTTGTGCAGAGCCGTGCTGTCGG
CGGCGGAGGAGTCTCGCGAGCTGCAGGTGACCGCCGTGTGCGACGGCCTG
TACGATCTCTGTCAACACGCCAGTGAGAAGCTGGCGGATCCCGAAATGAG
GAAACGGGTGCTGGGAAGGACATCCAAACTAAATTGGGCGGCCGTGCACG
CGTTCCTCGTCTCGAAACGTGGCCAGATCATCCCGGGCAGGATCGAGCAC
TACGGTGTTTCCCGGGTGTTCGACATGATTTGCACCGAAACCCCGGAACG
GAAGAGAAGACAGCTCTTCGACTGTATCGAGAGGCTGGGGCTGGAGGGTG
GGAGGCTGCACCACAGAGTCTACGCGGCGTTGCTAGAGAAGTACGTGAAA
ACCACCGCCTCGTAG
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