mRNA_P-littoralis_Contig788.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig788.24.1
Unique NamemRNA_P-littoralis_Contig788.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig788.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig788contigP-littoralis_Contig788:125028..127091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size398
Hectar predicted targeting categoryother localisation
Exons2
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791613.5528352-CDS-P-littoralis_Contig788:125027..1251821680791613.5528352-CDS-P-littoralis_Contig788:125027..125182Pylaiella littoralis U1_48CDSP-littoralis_Contig788 125028..125182 +
1680791613.5629745-CDS-P-littoralis_Contig788:126848..1270891680791613.5629745-CDS-P-littoralis_Contig788:126848..127089Pylaiella littoralis U1_48CDSP-littoralis_Contig788 126849..127089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig788.24.1prot_P-littoralis_Contig788.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig788 125028..127089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig788.24.1

>prot_P-littoralis_Contig788.24.1 ID=prot_P-littoralis_Contig788.24.1|Name=mRNA_P-littoralis_Contig788.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
TTQSGGASERELRNNQEREKRHISSACVCSDHTTFDTRESHHTWRHGKQR
PRHHRPQAPVWRTAWQPVHQTPRPPEWPRQHQLLLRAPRASPRSCTRTVI
SHARNRRPTRRQCGRTSPTASRRACATRPMQP
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mRNA from alignment at P-littoralis_Contig788:125028..127091+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig788.24.1 ID=mRNA_P-littoralis_Contig788.24.1|Name=mRNA_P-littoralis_Contig788.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2064bp|location=Sequence derived from alignment at P-littoralis_Contig788:125028..127091+ (Pylaiella littoralis U1_48)
ACAACCCAATCTGGAGGAGCAAGCGAGAGGGAGCTTAGAAACAATCAAGA
AAGAGAGAAACGACACATCAGTTCAGCTTGCGTTTGCAGTGATCACACCA
CGTTCGACACGAGAGAATCTCATCACACTTGGCGCCACGGCAAGCAACGT
CCACGGTGAGCTGTCTGTCGTCTTAGTATCTCTTCTCTGTTCCTGAGCTC
CTTCGACCGCTCCTCCCCCCCCCGCCTTTTGCTTTCAGTTCGTACTGGTT
ATAGTACAGCCACTGCTGAAACATTTTGTTCTTAGTATTTCCAGTATAAA
CTGGTCCGCTGTCCTTGTAGTTTCATATTTTTGTTTCGTGATCGAACATC
AGAGTACGTACCGAGATGTCTTCGGATTCAGCTTCTTCCAGCCCTGTGCA
CAACCGTACTAGCAACAGCAGTGATAGCCCGGCGAGTGCCACGGTATCGC
TTGCTGCTTCATCTAGTCACGGTAGTGAGCTTGACAGTGTGCTCTCGCTC
GAAGCTGAAAACGCAGAGTCGCTTCAGCATGAAACTGCTGCAGCAGCCGA
CCACATGATGAGTTCCGTTGAGTTGCACACACACACAGGCACTCACACTC
AAACCATGGCCACGGCTTCGCAAGTCTCAGCCATGAGTGGTGCACTGCCT
CTTGCGGTAGCGCCTCGAATTGCTGTAGAATCAGGCCCTGTTGTACAGGC
CAGTTCAGTACATTCGTCTGTTTCAGTGATGGCCTCTGCCGCTGTACCTG
ATCATGTACCTGTATCGGTCGATGCAGCCTCTACTACTGCACTACTGCTG
TTAGAAAATTCCGAAACTACTGCTGTACTATCTGGAATGGATGAAACTAC
TGCAGCTTTGTCGCACACACTATCCCTCGAGCACAGGCTCGAGAGCTCAA
ACACACCAATGCTTGACTCCGTGCTTGAAGTACTCCGGGAGCTCAGCACC
TCACCTGAGGCCTCGGGATCTTCGGATCCATCCGAGACTTCGACAGGGGA
AGCGTTGGCTGCATTCTCGCGCCCTTCCCCGACAACTGTCATCTCGGACG
AGACTTCGACAGGGGAAGCGTTGGCTGCAGCGTTGCCCTTCCCCAACAAC
TGCATTCTCGCGCCCTTCCCCAACAACTGTCATCTCGGACGGGACTTCGA
CAGGGGAAGCGTTGGCTGCATTCTCGCGCCCTTCCCCAACAGCTGTCATC
TCTCACGAGACTTCGACAGGGGAAGCGTTGGCTGCATTCTCGCGCCCTTC
CCCAACAGCAGTCATCTCGGATGAGACTTCGACTCAGGATTCGGCTGCAC
TCTCGCGCCTTTCCCGCACAGCTGTCTTCTCGGAGGAGACTTCGACGCTG
AAAATTTTGGCTGCACCCCCGCGCCGTTCCACCACAGCTGTTATCTCTGG
CGAGACTTCGACGCTGTTGTCGGGCACAACCTCTGGTCCCCAATCCGGAA
TACATGAGGGGGTCCCGTGGATCATGAAACCGTTATCTGATTTCACCGCC
GGCGCACACTCGCACATGCACGCTGAGCGCGCCAGTGCGCCATCACCAGG
CACCATTGTTGAACATGCTTCTTCACGCGTGGATATCACTGCTTCACCTT
TAAGTCATGCAGTTGCATCGGGCAGCACCGCTGCGGCTCGCCCGCCCCCA
GCCAAGCCCATGCCATCAATCACTCGAACACAGAACGCATTACGGGACGC
ACGTCGGATTCGCCGGTCAAATCAGTACACTTTGCATACGGCTGCACGCA
CTGCCTTTGACAAAACGCCCCTTCCGACGCCCAAAACAACAACACGTGCG
CTCCCCTTGCGCGGCATGCAGACACCACCGGCCCCAGGCACCAGTATGGC
GGACAGCTTGGCAACCAGTTCATCAGACACCGCGCCCGCCGGAATGGCCG
AGGCAGCACCAGCTCCTGCTACGGGCTCCACGAGCATCGCCGAGATCCTG
TACCCGTACAGTGATCTCTCACGCACGCAACAGGCGGCCTACTCGGAGGC
AATGTGGTCGGACTTCCCCGACAGCATCAAGGCGGGCCTGTGCAACCCGG
CCCATGCAGCCCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig788:125028..127091+

>mRNA_P-littoralis_Contig788.24.1 ID=mRNA_P-littoralis_Contig788.24.1|Name=mRNA_P-littoralis_Contig788.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig788:125028..127091+ (Pylaiella littoralis U1_48)
ACAACCCAATCTGGAGGAGCAAGCGAGAGGGAGCTTAGAAACAATCAAGA
AAGAGAGAAACGACACATCAGTTCAGCTTGCGTTTGCAGTGATCACACCA
CGTTCGACACGAGAGAATCTCATCACACTTGGCGCCACGGCAAGCAACGT
CCACGACACCACCGGCCCCAGGCACCAGTATGGCGGACAGCTTGGCAACC
AGTTCATCAGACACCGCGCCCGCCGGAATGGCCGAGGCAGCACCAGCTCC
TGCTACGGGCTCCACGAGCATCGCCGAGATCCTGTACCCGTACAGTGATC
TCTCACGCACGCAACAGGCGGCCTACTCGGAGGCAATGTGGTCGGACTTC
CCCGACAGCATCAAGGCGGGCCTGTGCAACCCGGCCCATGCAGCCC
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