mRNA_P-littoralis_Contig787.49.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig787.49.1
Unique NamemRNA_P-littoralis_Contig787.49.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig787.49.1 vs. uniprot
Match: A0A6H5JH56_9PHAE (Pyr_redox_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH56_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.300e-24
Identity = 70/131 (53.44%), Postives = 91/131 (69.47%), Query Frame = 2 
Query:  170 LFLWHGADGFSLSSSRLSAPAAAAGSAASCSSRAGGWSSTLHPLSV-STQTEEDLREKLARDNEDLSQVDSKVLDSFGGVSDAQFLTEIKKERPYFAVLAERASETVDSILSSASTTKESVPRKSSLAKPR 559
            L LWHGA+GFS + +     A A+    +         ++  PL V S +TEE+LREKLAR+NEDLS+VDSKVL++FGG+ DAQFL EIKKERPYFAVLAE+ASETVDSIL ++ + +      + + KPR
Sbjct:   11 LILWHGANGFSSTGAHRHVSAGASRRLRN---------NSPSPLRVTSPKTEEELREKLARNNEDLSEVDSKVLENFGGLEDAQFLAEIKKERPYFAVLAEKASETVDSILKTSKSDRPDSSPPTGVPKPR 132
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig787.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH56_9PHAE1.300e-2453.44Pyr_redox_2 domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig787contigP-littoralis_Contig787:121699..126121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size767
Hectar predicted targeting categorysignal peptide
Exons3
Cds size438
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791613.2983522-UTR-P-littoralis_Contig787:121698..1218371680791613.2983522-UTR-P-littoralis_Contig787:121698..121837Pylaiella littoralis U1_48UTRP-littoralis_Contig787 121699..121837 +
1680791613.35254-UTR-P-littoralis_Contig787:125931..1261211680791613.35254-UTR-P-littoralis_Contig787:125931..126121Pylaiella littoralis U1_48UTRP-littoralis_Contig787 125932..126121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791613.310292-CDS-P-littoralis_Contig787:121837..1220681680791613.310292-CDS-P-littoralis_Contig787:121837..122068Pylaiella littoralis U1_48CDSP-littoralis_Contig787 121838..122068 +
1680791613.3227863-CDS-P-littoralis_Contig787:125245..1254341680791613.3227863-CDS-P-littoralis_Contig787:125245..125434Pylaiella littoralis U1_48CDSP-littoralis_Contig787 125246..125434 +
1680791613.3352907-CDS-P-littoralis_Contig787:125913..1259311680791613.3352907-CDS-P-littoralis_Contig787:125913..125931Pylaiella littoralis U1_48CDSP-littoralis_Contig787 125914..125931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig787.49.1prot_P-littoralis_Contig787.49.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig787 121838..125931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig787.49.1

>prot_P-littoralis_Contig787.49.1 ID=prot_P-littoralis_Contig787.49.1|Name=mRNA_P-littoralis_Contig787.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=146bp
MWTAAFFSTPLFLWHGADGFSLSSSRLSAPAAAAGSAASCSSRAGGWSST
LHPLSVSTQTEEDLREKLARDNEDLSQVDSKVLDSFGGVSDAQFLTEIKK
ERPYFAVLAERASETVDSILSSASTTKESVPRKSSLAKPRGGLLL*
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mRNA from alignment at P-littoralis_Contig787:121699..126121+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig787.49.1 ID=mRNA_P-littoralis_Contig787.49.1|Name=mRNA_P-littoralis_Contig787.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4423bp|location=Sequence derived from alignment at P-littoralis_Contig787:121699..126121+ (Pylaiella littoralis U1_48)
GTGAGATACGACCAGACGGATATTTTCGAGAACATAAACAATACTGTGAC
GTCGTCACCGCTTGCTTATCCACCCGCTGCTGTACTGAGCAGAGAGCACC
CACTGCTCGTACGAAACACACACATCGGGGCACCAAAGCATGTGGACTGC
CGCGTTTTTTTCAACGCCCCTTTTCTTGTGGCACGGGGCTGATGGATTTT
CCCTGAGTAGCAGTCGCCTGTCGGCGCCAGCCGCAGCAGCAGGATCAGCT
GCTTCCTGCAGCAGTCGAGCTGGCGGCTGGAGCAGCACTCTGCATCCCCT
CTCCGTTTCGACTCAGACAGAGGAGGACCTGAGGGAAAAGCTTGCACGAG
ATAACGAGGACTTGAGCCAGGTGAGTACAGCAGCGTTACCGTGCAGGCTG
TAGAGCTTCCTTGGCCGGGGCGCGGAAGAATTACGGTTGCGAAACACACA
CACTGCTTGATGCTACAACAGTAAAAGTTGCTGTACCCGCGTCAACGAAA
CCTTTTCTTGTTTGCCAAGAACTAAACCATTGGCCATCACATGCGGCCTA
TCATATGACTGAACCTGACTGACTGAAACCCAGAAAGCGGTCTGTCTTCA
GATCAGATTGCAGAGGCATGTACTGCTGCAAAGAGGGTCAGGATAAACAT
GCCTTTGACACTCCTACGAACTTTAGGCAACATTGCGACTGCTGCCAATG
GCGCCGAGCCTCCATCTGTTAGTAATGCAGGTTCTGGTGAGCCCCCACGC
ATTTATTTTTTTGCGGACAAATACGCGAAGCATGATACACATTATATCGT
CATTATACGGGTAATACTTTGTGAAAAGATGATGCGTTCATCACGAATGC
CGCACTGCAATATCTACAGCAGTACACAGAAGAGCCTTGAGGGAAAACTG
GGTGTCGTCACCCTGGTTCTGTGTGTGTCCGATGTGGAGCACACAACGGG
TCTTCGCGTCCTCACTCTCGACGGCGAGAGTCGGGAGAGATCTGTAGAGA
GAGAGAGAGGACGGCACTGCCAGAACAAGTTCGTAGTCAAAGCGATGGAC
GGCGATACAATACCCCGAGGCGGGTTCAGTGGCGGTTCAGTCAGCATGTA
CTGGTACAGCAGTACATGCAAATAGAGAAACGGAGATGCATCATGACTGC
CGAAGATATATACTCTATGCAGCACCGGGCGTATGCGGTTGGCCTTACAG
CAGTATCCACTTTGGTTGTAATACCCTGGTTCTTCACAGGTGGGTGTGTA
GTGGAGTCTGCGGTGTTGGATTCTGGGGTTGATTCGAGCAAATTCTAGTA
CATGCGTTTTGGGTGTGAAGGTTTGACAACAGAGAGACTATCATACAGTA
CAAGTACGTTATACCTCTTTGTCTCTTTTTTTGCTTTTCCCTTTTCGTTC
CCCTGCTTCCTCTTTGTTTGGCTGCCTGTTTGTTGTGTTGGTGTACGAGT
ACACTCCCTCAGTCTTTGTGCCCTCCCTGTATCTTCTTTTCTACCGGTAT
TTTTTTGTCTTTGTGCCCTCCCTGTGTCTTCCTCTTTTTTATTTGTTTGT
CTTTCGTCTATTGATCATATAGTTACTGGACCATCGCCCTGGTTTGCCTT
TGCCTTGGTCTGTCATGGCCCTGGGCCCTGGCTCGATATACGAAGTACTT
CGAAGTATATGGTTATGGTTGAGGTTTGTCTTGGTTATTTTTTGTCTGTC
GTACTGCTGTTTCCAATTTTTGTTTTTTCTTTCGAACCTGTTATTTTTTT
TCTGTGTTTTGTTTGGTACGTTGGCCACCACAGATGGTACCCCAACGGCA
CCATATCTGATTTGAATGTGGGTGATCATAGTCCATTTATTTTATTTTTA
TTTTTTCCTCCTAGCACGATATGTGCCTGGTTTGTGACCACGGGCTAGAC
TGCGGCGGTAGTGAGCTAATGTGAGAATCAACAACAAACACTCAAAATAT
GAGGAAGGACTCAGAGGATTCCGTCCAGGTTTCTCTCCACTGCAGCACCA
ATTTCCTCCTGTGTTTCTTTCTTGCGTGTGCGGTATGCAGTCGACACCGG
GCCTCTCTATCGCTGGCGCTGGCGAGAGAGGCCGGCGAGAGAGAGAGAGA
GAGAGGAAGCAGGGAGCGAAACTGCATTGAGTGACTAGAGGCAGTGCCAA
AACGAATTATCAGCACGATACACGCGGCGCGAAAACTAACCCCGGGGCTT
TCAGTGACCAGGTACTGGCTCTCTAATCTGAGGCACCAAGTCGGAGAACC
TCACCGAGGATCTCTGACGGGTCGTCTGTCTGGTGGTGCTCCAAAAGGTA
TAGGTCGCTCCAGATATACCACGGGCCGCCCTGAACCGAATTTTACATCA
ATGACCCCGGCACTTGTACAATACCGGTACTACTGCTGTATTCCACCGCA
GAAAGTAGCGGGTCTATGATAGAAAAGGCGGTGTTGGATCAAAGTCGTCG
AGGGCTTCCGAAAACATCTTGTTTGATGCTGGCCAGCCACATCTTCGTTG
TGGTGTATGTACCTTACGCTGTACATGTACCGGTAATCTATCGCTATACA
GCAGTAGCAGATCATTCTTTTGCAGATCGGACGACGGTGCGTAATGTGCA
ACCTTCGGGTACTGCTGTGCCATATCATAGTCATTAAAGAGTATGCTAAG
TATACGGAGTATCTTCGCGAAGGCCACGTCGAGACCGGAGCGCCGCGCTC
GAAAATTTCTAGATACAAGCGTGTGCATACGTCTATTGGCACACCTCCCG
CAGACAAATCAGTGATCATGATCATTTACTACGGAAGTTTGTCGAGACCT
GAAATCCCTGCAACAACAGTCAGTGACCCCGCAACACAGAGTGATAAACC
TGGCGATCCAAAGCTGGAACAACGATATCTATATTTGGCTTTTGAGGTTA
AAATGAAACCGATGGGATGGCAACACGCAAGACATGTATACATACACAAA
GAAGCAGGGATCACCAGGGATGGTAATATCTAATACTTCGAAGTAGTAGC
TTTGAAAAACGGCGGTCGAAATCACCCAGCGTCCGTATGATAGCGGAGCT
ACACAAGCAGGTACATACGGAGTATATATTAATATTTCATACGCCAAATA
CGCTTCTTACGAGTAGAGCAGCCACTTCGTTCTCTACAGTTTTCAGCCTC
AAAAAAGGGATGCCTCATCCTACCGTCGATGGAGGCAGCGTATACAGTAG
GATTAGGAAAGGACCTCTCGACCGATTCTGAAAGATACGGGGATGGTAAA
AAATGATCTCCACGGCAGTAGATATCATGCGAGTCCCAACGAAAACCGAA
AATGGCTCGGCAGAGGCCTCTCTGAGACCTGTCAGAAAACGTTGACATCG
TTTGTGCAAGGATTGGGGCACTCTTTATTCGCTGCCAAGAAATCGAGCGT
CGAGAGTCGATTCCAGGGAGTGCGGGAAACTATGCAAATCGCCCTTTGTA
CTCCGTAACGTGTACCCGCCCTTCGTGTTACAGAAACGGTCATCACTCCT
CCGCCCCCGTTTTTCTGGAACGTTCGGGCGTTTCGTCGAGGGAGCAGGTG
GACTCGAAAGTCCTCGACAGCTTCGGTGGAGTGAGCGACGCCCAGTTCCT
GACGGAGATCAAGAAGGAGAGGCCGTACTTTGCCGTCCTCGCCGAGAGAG
CGTCGGAAACGGTCGACTCCATTTTGTCAAGCGCATCTACAACCAAGGAA
AGCGTGCCTCGAAAGTCCAGCTTGGCCAAGCCAAGGGTAAGATGCCAATG
GGGACTGCTGCAATCGACTCATTGTTTTGTGGAGCAAGTCACATCAACGC
GCCATCATGGCCCGGGGGGGTGTTTTGTCTTTGAGAGTACTACTGCTGTA
CTGCTGTATCGGGAGGACTTGCTTGACTCATTGTTTTGTGGGGGCGAACC
ACACCAGGTAACTCAACGCGCTATTATGGCCAGGGGGGATTGTTTGTCTC
TGAGGGTACTTCTGCTGCACTGCTGTATCGGGAGGATGTGCTTGAAGCCG
TGCTCGCCCTCAACGCGCTCGTTATCTAGCTTTCGCGCTTCACCCCCCGA
AACTCGGCAGCGAATGCATCGACCTGCCTCATTTCTTCGTGTATCCCAGC
GTGTCCGTGTGCGCATTCTCGAAGGAACTCGGGGGCGGACATGCACCGAA
CAAATCGCAAGGTCCATCCCACGTCAAATATTTTCTGACACGCATGCCAC
CGCAAACACTACCAGGGAGGACTACTGCTGTAAAACTAAAACGTCACAAT
CGAGAAGCGACTCCCTGCTGGTGTTGCTCCCATGCGCCTCCTGCCCGAAG
CCCCTCACTCCATGATGCACGGTGCCCCCGTCGGCTTTCTCAACGAGAGG
CGACTCCCCTGCTGGTGTCGCCCCCTTGCGCCTCCTGCCCGAAGCCCCTC
ACCCCATGATGCACGGTGCCCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig787:121699..126121+

>mRNA_P-littoralis_Contig787.49.1 ID=mRNA_P-littoralis_Contig787.49.1|Name=mRNA_P-littoralis_Contig787.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=438bp|location=Sequence derived from alignment at P-littoralis_Contig787:121699..126121+ (Pylaiella littoralis U1_48)
ATGTGGACTGCCGCGTTTTTTTCAACGCCCCTTTTCTTGTGGCACGGGGC
TGATGGATTTTCCCTGAGTAGCAGTCGCCTGTCGGCGCCAGCCGCAGCAG
CAGGATCAGCTGCTTCCTGCAGCAGTCGAGCTGGCGGCTGGAGCAGCACT
CTGCATCCCCTCTCCGTTTCGACTCAGACAGAGGAGGACCTGAGGGAAAA
GCTTGCACGAGATAACGAGGACTTGAGCCAGGTGGACTCGAAAGTCCTCG
ACAGCTTCGGTGGAGTGAGCGACGCCCAGTTCCTGACGGAGATCAAGAAG
GAGAGGCCGTACTTTGCCGTCCTCGCCGAGAGAGCGTCGGAAACGGTCGA
CTCCATTTTGTCAAGCGCATCTACAACCAAGGAAAGCGTGCCTCGAAAGT
CCAGCTTGGCCAAGCCAAGGGGAGGACTACTGCTGTAA
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