mRNA_P-littoralis_Contig787.47.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig787.47.1
Unique NamemRNA_P-littoralis_Contig787.47.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig787.47.1 vs. uniprot
Match: A0A6H5LNE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNE2_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.660e-27
Identity = 67/194 (34.54%), Postives = 104/194 (53.61%), Query Frame = 1 
Query:   43 EEDVRQDFNMFRGQMDSLFVQEECDDALRNTRPIKVGDKNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHGELELERSR 624
            E+DV+    +F  Q  SL  QE C  A+ + + I+VG+ +   + L V  G  AV++A +AW +I+ K+ VP++V  + A G P+E+W+  +  Y       K  L+ +   L+ QVGE P  Y  RA   R K E +G   SD ++N H  R L  D+ +Q+S+LL   E+ TE +E+ +     E E  R R
Sbjct:  368 EDDVQTAVMVFTSQFRSLLEQERCLGAIESKKTIRVGNTDANISALKVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILASGCPTESWDQFLNFYRVYAERDKLELQGQLYTLKQQVGEEPRRYLTRASAPRQKLEAYGWVQSDHDANVHYVRNLMPDFNVQRSVLLAHSEVKTELVEKVILTTWAETEAARKR 561
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BLAST of mRNA_P-littoralis_Contig787.47.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 7.090e-26
Identity = 66/194 (34.02%), Postives = 104/194 (53.61%), Query Frame = 1 
Query:   43 EEDVRQDFNMFRGQMDSLFVQEECDDALRNTRPIKVGDKNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHGELELERSR 624
            E+DV+    +F  Q  SL  QE C  A+ +   I+VG  +   + L V  G  AV++A +AW +I+  + VP++   + A G P+E+W+  +  Y     T K  L+ +  +L+ QVGE P  Y  RA  LR   E +G   SD ++N H  R L  D+ +Q+S+LL   EI+T+ +E+ +  +  E E  R R
Sbjct:   64 EDDVQTAVMVFTSQFRSLLKQERCLGAIESKNTIRVGKTDANISALKVEHGTEAVDRAVKAWQLIISNMQVPTIFPAILASGCPTESWDQFLNFYRVHAETEKLELQGQRYSLKQQVGEEPLRYLTRASVLRQNLEAYGWVQSDHDANFHYVRNLLPDFNVQRSVLLAHSEITTKLVEKVIMTSWAETEAARKR 257
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BLAST of mRNA_P-littoralis_Contig787.47.1 vs. uniprot
Match: A0A6H5JKK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKK7_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.050e-24
Identity = 58/166 (34.94%), Postives = 90/166 (54.22%), Query Frame = 1 
Query:  127 RNTRPIKVGDKNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHGELELERSR 624
            + T  +  G  +   + L V  G  AV++A +AW +I+ K+ VP++V  + A G P+E+W+  +  Y     T K  L+ +W +L+ QVGE P  Y  R   LR K E +G   SD ++N H  R L  D+ +Q+S+LL   E+ TE +E+ +  A  E E  R R
Sbjct:   60 KETIRVSAGKTDANISALKVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILASGYPTESWDQFLNFYRVHAETDKLELQGQWYSLKQQVGEEPRRYLTRTSILRQKLEAYGWVQSDHDANAHYVRNLLPDFNVQRSVLLAHSEVKTELVEKVILTAWAETEAARKR 225
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BLAST of mRNA_P-littoralis_Contig787.47.1 vs. uniprot
Match: A0A6H5JKH8_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH8_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 4.490e-23
Identity = 57/166 (34.34%), Postives = 91/166 (54.82%), Query Frame = 1 
Query:  127 RNTRPIKVGDKNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHGELELERSR 624
            + T  I  G  +   + L+V  G  AV++A +AW +I+ K+ VP++V  +   G P+E+W+  + ++     T K  L+ +W +L+ Q GE P  Y  RA  LR K E +G   SD ++N H  R L  D+ +Q+S+LL   E+ TE +E+ +  A  E E  R R
Sbjct:  105 KETIRISAGKTDANISALNVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILTSGCPTESWDQFLNLFRVHAETDKLELQGQWYSLKQQSGEEPRRYLTRASVLRQKLEAYGWAQSDHDANVHYVRNLLPDFNVQRSVLLAHSEVKTELVEKVILTAWAETEAARKR 270
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BLAST of mRNA_P-littoralis_Contig787.47.1 vs. uniprot
Match: A0A6H5KB85_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB85_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.030e-22
Identity = 57/161 (35.40%), Postives = 88/161 (54.66%), Query Frame = 1 
Query:  127 RNTRPIKVGDKNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHGELE 609
            + T     G  +   + L V  G  AV++A +AW +I+ K+ VP++V  + A G P+E+W+  +  Y     T K  L+ +W +L+ QVGE P  Y  RA  LR K E +G   SD ++N H  R L  D+ +Q+S+LL   E+ TE +E+ +  A  E E
Sbjct:  360 KETIRTSAGKTDANISALKVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILASGCPTESWDQFLNFYRVHAETDKLELQGQWYSLKQQVGEEPRRYLTRASVLRQKLEAYGWVQSDHDANVHYVRILLPDFNVQRSVLLAHSEVKTELVEKVILTAWAETE 520
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BLAST of mRNA_P-littoralis_Contig787.47.1 vs. uniprot
Match: A0A6H5JCR6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR6_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.170e-22
Identity = 58/166 (34.94%), Postives = 91/166 (54.82%), Query Frame = 1 
Query:  127 RNTRPIKVGDKNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHGELELERSR 624
            + T  I  G+ +   + L V  G  AV++A +AW +I+ K+ VP++V  +   GSP+E+W+  +        + K  L+ +W +L+ QVGE P  Y  RA  LR K E +G   SD ++N H  R L  D+ +Q+S+LL   E+ TE +E+ +  A  E E  R R
Sbjct:  105 KETIRISAGNTDANISALKVEHGTEAVDRAFKAWQLIISKIQVPTIVPAILDSGSPTESWDQFLNFCRVHAESDKLELQGQWYSLKQQVGEEPRRYLTRASVLRQKLEAYGWVQSDHDANVHYVRNLLPDFNVQRSVLLAHSEVKTELVEKVILTAWAETEAARKR 270
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BLAST of mRNA_P-littoralis_Contig787.47.1 vs. uniprot
Match: A0A6H5JN82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN82_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 8.170e-20
Identity = 55/192 (28.65%), Postives = 96/192 (50.00%), Query Frame = 1 
Query:   49 DVRQDFNMFRGQMDSLFVQEECDDALRNTRPIKVGDKNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHGELELERSR 624
            DV+    +F  Q   L+  ++C +A+ +   I+VG  +     L   +G  A+EKA +AW +IL K+ V S+V  + + G P+E+W +    +     T + +L+ EW  L   V   P  Y +R   LR +    GV +++ ++NRH+ R L  +Y +    L+    +  E +ER +  A  E+E  R +
Sbjct:  129 DVQVRVQVFESQFRMLWQLDDCLNAIVSEETIRVGKSDADIPKLKEEYGRKAIEKAMKAWELILAKIQVASIVPAIISSGCPTESWRIFRNHFQLHAHTERTSLQLEWQELTQGVQHHPKEYLSRGWVLRQRLSSWGVKITEDDANRHLVRNLLPEYVVYTGFLMSESGLEKERVERIIVNAWAEMEARRKK 320
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BLAST of mRNA_P-littoralis_Contig787.47.1 vs. uniprot
Match: A0A6H5JQQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ7_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 5.850e-16
Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 1 
Query:  127 RNTRPIKVGDKNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSEAWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKREKHGVTLSDSESNRH 492
            + T  I  G  +L  + L V  G  AV++A +AW +I+ K+ VP++V  + A G P+E+W+  +  Y     T K  L+ +W +L+ QVGE P  Y  RA  LR K E +G   SD ++N H
Sbjct:  105 KETIRISAGKTDLDISALKVEHGTVAVDRAVKAWQLIISKIQVPTIVPAILASGCPTESWDQFLNYYRVHAETDKLELQGQWYSLKQQVGEEPRRYLTRASVLRQKLEAYGWGQSDHDANVH 226
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig787.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5LNE2_9PHAE2.660e-2734.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LC04_9PHAE7.090e-2634.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKK7_9PHAE2.050e-2434.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKH8_9PHAE4.490e-2334.34Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KB85_9PHAE1.030e-2235.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCR6_9PHAE1.170e-2234.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JN82_9PHAE8.170e-2028.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQQ7_9PHAE5.850e-1636.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig787contigP-littoralis_Contig787:110055..110678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size624
Hectar predicted targeting categoryother localisation
Exons1
Cds size624
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791613.2637432-CDS-P-littoralis_Contig787:110054..1106781680791613.2637432-CDS-P-littoralis_Contig787:110054..110678Pylaiella littoralis U1_48CDSP-littoralis_Contig787 110055..110678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig787.47.1prot_P-littoralis_Contig787.47.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig787 110055..110678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig787.47.1

>prot_P-littoralis_Contig787.47.1 ID=prot_P-littoralis_Contig787.47.1|Name=mRNA_P-littoralis_Contig787.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=208bp
SVVAAWNLQRTKGKEEDVRQDFNMFRGQMDSLFVQEECDDALRNTRPIKV
GDKNLRPADLHVIFGVPAVEKAQRAWSIILEKVTVPSLVEQLQALGSPSE
AWELMVEMYTALPTTAKETLEQEWINLEMQVGETPTLYFARAKTLRTKRE
KHGVTLSDSESNRHIARRLSSDYALQKSMLLISDEISTETLERTVKKAHG
ELELERSR
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mRNA from alignment at P-littoralis_Contig787:110055..110678-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig787.47.1 ID=mRNA_P-littoralis_Contig787.47.1|Name=mRNA_P-littoralis_Contig787.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=624bp|location=Sequence derived from alignment at P-littoralis_Contig787:110055..110678- (Pylaiella littoralis U1_48)
AGTGTTGTAGCAGCATGGAACCTTCAGAGAACAAAAGGGAAAGAAGAGGA
TGTAAGACAGGATTTTAATATGTTCAGAGGACAGATGGATTCTTTGTTTG
TGCAGGAAGAGTGCGATGACGCACTGAGAAACACTCGCCCCATCAAGGTG
GGCGACAAAAATTTAAGACCAGCAGACTTGCACGTGATTTTTGGTGTACC
AGCAGTAGAGAAGGCACAGAGAGCGTGGAGTATTATACTGGAGAAGGTCA
CTGTTCCATCTCTTGTCGAGCAGCTGCAGGCACTAGGTAGTCCGAGTGAA
GCATGGGAGCTGATGGTAGAGATGTATACTGCCTTGCCCACCACAGCCAA
AGAAACACTTGAGCAGGAGTGGATCAATCTGGAGATGCAAGTAGGAGAGA
CCCCCACTTTGTACTTTGCTCGCGCCAAAACGCTGCGCACAAAGCGTGAA
AAACATGGCGTGACACTTTCCGATTCAGAGTCTAACAGACATATTGCCCG
CCGTCTTTCGTCCGACTACGCACTGCAAAAGAGTATGCTTCTGATAAGTG
ATGAGATTTCTACAGAGACCCTCGAACGCACAGTGAAGAAGGCGCACGGG
GAGTTGGAATTGGAACGGTCGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig787:110055..110678-

>mRNA_P-littoralis_Contig787.47.1 ID=mRNA_P-littoralis_Contig787.47.1|Name=mRNA_P-littoralis_Contig787.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=624bp|location=Sequence derived from alignment at P-littoralis_Contig787:110055..110678- (Pylaiella littoralis U1_48)
AGTGTTGTAGCAGCATGGAACCTTCAGAGAACAAAAGGGAAAGAAGAGGA
TGTAAGACAGGATTTTAATATGTTCAGAGGACAGATGGATTCTTTGTTTG
TGCAGGAAGAGTGCGATGACGCACTGAGAAACACTCGCCCCATCAAGGTG
GGCGACAAAAATTTAAGACCAGCAGACTTGCACGTGATTTTTGGTGTACC
AGCAGTAGAGAAGGCACAGAGAGCGTGGAGTATTATACTGGAGAAGGTCA
CTGTTCCATCTCTTGTCGAGCAGCTGCAGGCACTAGGTAGTCCGAGTGAA
GCATGGGAGCTGATGGTAGAGATGTATACTGCCTTGCCCACCACAGCCAA
AGAAACACTTGAGCAGGAGTGGATCAATCTGGAGATGCAAGTAGGAGAGA
CCCCCACTTTGTACTTTGCTCGCGCCAAAACGCTGCGCACAAAGCGTGAA
AAACATGGCGTGACACTTTCCGATTCAGAGTCTAACAGACATATTGCCCG
CCGTCTTTCGTCCGACTACGCACTGCAAAAGAGTATGCTTCTGATAAGTG
ATGAGATTTCTACAGAGACCCTCGAACGCACAGTGAAGAAGGCGCACGGG
GAGTTGGAATTGGAACGGTCGAGG
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