mRNA_P-littoralis_Contig78.133.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig78.133.1
Unique NamemRNA_P-littoralis_Contig78.133.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig78.133.1 vs. uniprot
Match: A0A6H5L5G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5G4_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 9.920e-5
Identity = 25/71 (35.21%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:   88 GPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQGYKFETDDPGMLVTKKSTG 300
            G D     + G GD+ + L+++ G + + V NAA+VP F YNLLS+S    +G+ +     G+ +T K+ G
Sbjct:   22 GGDKAPVPLLGYGDVTLVLQTEDGGVPVPVLNAAHVPKFPYNLLSLSSLAEEGHTYSGMKGGLTLTTKAGG 92
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig78.133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L5G4_9PHAE9.920e-535.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig78contigP-littoralis_Contig78:622519..622905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog5180.EDN93342
PFAMsRVT_2,gag_pre-integrs,rve
Model size387
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.06e-07
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,39W4B@33154|Opisthokonta,3P15U@4751|Fungi,3QR1M@4890|Ascomycota
DescriptionEncoded by
Cds size387
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791607.6879742-CDS-P-littoralis_Contig78:622518..6229051680791607.6879742-CDS-P-littoralis_Contig78:622518..622905Pylaiella littoralis U1_48CDSP-littoralis_Contig78 622519..622905 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig78.133.1prot_P-littoralis_Contig78.133.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig78 622519..622905 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig78.133.1

>prot_P-littoralis_Contig78.133.1 ID=prot_P-littoralis_Contig78.133.1|Name=mRNA_P-littoralis_Contig78.133.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=129bp
WHIDSGASGTVTRSSRMMTNFRPCNKLVAGPDNVTHQIKGRGDIAVDLKS
DVGSMLMAVKNAAYVPTFAYNLLSMSQCVRQGYKFETDDPGMLVTKKSTG
EHLLMRPDNDLYVSYGRRVDGEVETACAV
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mRNA from alignment at P-littoralis_Contig78:622519..622905-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig78.133.1 ID=mRNA_P-littoralis_Contig78.133.1|Name=mRNA_P-littoralis_Contig78.133.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig78:622519..622905- (Pylaiella littoralis U1_48)
TGGCACATTGACTCCGGGGCTTCAGGCACCGTGACGCGTAGCTCCAGGAT
GATGACCAACTTCCGACCGTGCAACAAGCTAGTTGCAGGTCCAGACAATG
TCACTCACCAGATTAAAGGCAGAGGTGACATAGCCGTCGACCTCAAGTCT
GATGTGGGGTCAATGCTTATGGCTGTCAAAAACGCAGCCTACGTGCCCAC
GTTTGCCTACAATCTGCTCTCCATGTCCCAGTGCGTGCGACAAGGATACA
AATTCGAAACCGATGACCCCGGTATGCTCGTCACTAAAAAGTCGACCGGA
GAACACCTACTGATGCGCCCCGACAATGACTTATATGTTTCATACGGCCG
CAGAGTTGATGGTGAGGTAGAAACAGCCTGCGCCGTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig78:622519..622905-

>mRNA_P-littoralis_Contig78.133.1 ID=mRNA_P-littoralis_Contig78.133.1|Name=mRNA_P-littoralis_Contig78.133.1|organism=Pylaiella littoralis U1_48|type=CDS|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig78:622519..622905- (Pylaiella littoralis U1_48)
TGGCACATTGACTCCGGGGCTTCAGGCACCGTGACGCGTAGCTCCAGGAT
GATGACCAACTTCCGACCGTGCAACAAGCTAGTTGCAGGTCCAGACAATG
TCACTCACCAGATTAAAGGCAGAGGTGACATAGCCGTCGACCTCAAGTCT
GATGTGGGGTCAATGCTTATGGCTGTCAAAAACGCAGCCTACGTGCCCAC
GTTTGCCTACAATCTGCTCTCCATGTCCCAGTGCGTGCGACAAGGATACA
AATTCGAAACCGATGACCCCGGTATGCTCGTCACTAAAAAGTCGACCGGA
GAACACCTACTGATGCGCCCCGACAATGACTTATATGTTTCATACGGCCG
CAGAGTTGATGGTGAGGTAGAAACAGCCTGCGCCGTT
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