mRNA_P-littoralis_Contig78.67.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig78.67.1
Unique NamemRNA_P-littoralis_Contig78.67.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig78.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig78contigP-littoralis_Contig78:285346..285762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size417
Hectar predicted targeting categoryother localisation
Exons1
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791602.3607564-CDS-P-littoralis_Contig78:285345..2856751680791602.3607564-CDS-P-littoralis_Contig78:285345..285675Pylaiella littoralis U1_48CDSP-littoralis_Contig78 285346..285675 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791602.3731282-UTR-P-littoralis_Contig78:285675..2857621680791602.3731282-UTR-P-littoralis_Contig78:285675..285762Pylaiella littoralis U1_48UTRP-littoralis_Contig78 285676..285762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig78.67.1prot_P-littoralis_Contig78.67.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig78 285346..285675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig78.67.1

>prot_P-littoralis_Contig78.67.1 ID=prot_P-littoralis_Contig78.67.1|Name=mRNA_P-littoralis_Contig78.67.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
MEDPEARCDGGDVLFTGTALCTCMHFHFFTEGLVPNLKRGIFFFSLFFSW
VSRRWRYSCCPFVVVVPLWKSFPASIDVSVFVVGSSNALLPSSPPPALRY
FPCSAPFRS*
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mRNA from alignment at P-littoralis_Contig78:285346..285762+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig78.67.1 ID=mRNA_P-littoralis_Contig78.67.1|Name=mRNA_P-littoralis_Contig78.67.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=417bp|location=Sequence derived from alignment at P-littoralis_Contig78:285346..285762+ (Pylaiella littoralis U1_48)
ATGGAGGATCCCGAGGCGCGTTGTGACGGAGGCGACGTTTTGTTCACAGG
TACTGCGTTATGTACTTGTATGCATTTCCATTTTTTCACGGAAGGACTTG
TCCCAAACCTCAAGCGGGGCATTTTTTTTTTCTCTCTTTTTTTTTCTTGG
GTTTCTCGGCGCTGGCGGTATTCCTGTTGCCCGTTCGTTGTTGTTGTTCC
TCTATGGAAAAGCTTTCCGGCGTCAATCGATGTGTCGGTTTTCGTCGTTG
GCTCCTCAAATGCACTTCTTCCTTCTTCGCCTCCTCCTGCTCTTCGTTAT
TTTCCTTGCTCCGCACCTTTCCGGTCGTGATCCTCCTGACATTCTTCACA
TGCGTCCCGCTTTGCTGTTGTTGCTGGGTGAGACACCAAGGGCGCCACAT
GTTCGTGGGAATATCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig78:285346..285762+

>mRNA_P-littoralis_Contig78.67.1 ID=mRNA_P-littoralis_Contig78.67.1|Name=mRNA_P-littoralis_Contig78.67.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig78:285346..285762+ (Pylaiella littoralis U1_48)
ATGGAGGATCCCGAGGCGCGTTGTGACGGAGGCGACGTTTTGTTCACAGG
TACTGCGTTATGTACTTGTATGCATTTCCATTTTTTCACGGAAGGACTTG
TCCCAAACCTCAAGCGGGGCATTTTTTTTTTCTCTCTTTTTTTTTCTTGG
GTTTCTCGGCGCTGGCGGTATTCCTGTTGCCCGTTCGTTGTTGTTGTTCC
TCTATGGAAAAGCTTTCCGGCGTCAATCGATGTGTCGGTTTTCGTCGTTG
GCTCCTCAAATGCACTTCTTCCTTCTTCGCCTCCTCCTGCTCTTCGTTAT
TTTCCTTGCTCCGCACCTTTCCGGTCGTGA
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