mRNA_P-littoralis_Contig776.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig776.19.1
Unique NamemRNA_P-littoralis_Contig776.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig776.19.1 vs. uniprot
Match: A3Z1C6_9SYNE (PAS protein n=2 Tax=Synechococcus sp. WH 5701 TaxID=69042 RepID=A3Z1C6_9SYNE)

HSP 1 Score: 177 bits (450), Expect = 1.890e-47
Identity = 121/352 (34.38%), Postives = 188/352 (53.41%), Query Frame = 1
Query:   49 RFLANISYETRTPMNGIVGMSDILRHEKGIPAQSVECVRVIRACSNHLLNLINNVLDLSKIESKQMTACAQKMTKEQS*RSCTRTSHSA---PRLWVMVS--------------E*HR*ISNLITNAVKFTDDGSIHVDIRWEKQTDAGAALEAIIVCLTVTDTGIAVPENSMARLFKPFTQATNNTHSQ---ATGIGLTISKSLAVAMGGSLTCTSKEKEGTKFTFEFVVIGSFTLEPESVTCAESPAPVSVPLFSETALIVDDNVVNTRVLERMLAKMEVASETAMSGKEAISFCNKRKYGVIFMDKFMPGIDVIESTRPLRREGLNRDTVVIFVTADASPESQQECFLA 1044
            +FL+ IS+E RTP+N ++GMSD+L  +  +  Q  E V  I + +  LL LIN++LDLSKIE+++M   ++  +       C R   +A    RL +  S                 + + NL+ NA+KFT  GS+ V I W   T +   L+     L V DTG  + E+ ++++F+ FTQ  N  H+     TG+GL I   L   MGGS+   S+  +G++F     +  S   EPE+++ +    P+ + L S   L V+DN +N RVLE +LAK+ + +E A  G++A+    +  + ++ MD  MPGID +E+TR LR   + +  VV   TA A  + QQEC  A
Sbjct:  156 QFLSTISHEIRTPLNAVIGMSDLLL-DTSLDGQQQELVHTINSSAELLLRLINDILDLSKIEARKMKISSETFSLRSLVLDCCRMMDAAVRAKRLELRCSFSDDPPDALIGDGLRIRQIVLNLLNNAIKFTSHGSVDVKIGWRPLTSSAIELD-----LVVADTGTGISEDFLSKIFQDFTQEHNQAHASHHHGTGLGLAICDRLCRLMGGSIEAVSQLGQGSRFHVRLPLKRS---EPEALSASGLDQPLELDLSSVRLLAVEDNRINQRVLELLLAKLSLQAEFADCGEDAVERLGQGGFNLVLMDLQMPGIDGLEATRQLRALPIPQPYVVAL-TAFAFEDQQQECLAA 497          
BLAST of mRNA_P-littoralis_Contig776.19.1 vs. uniprot
Match: Q8QKV7_ESV1K (Histidine kinase n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKV7_ESV1K)

HSP 1 Score: 178 bits (452), Expect = 1.280e-46
Identity = 128/399 (32.08%), Postives = 200/399 (50.13%), Query Frame = 1
Query:   19 DTRSVSTQKSRFLANISYETRTPMNGIVGMSDILRHEKGIPAQSVECVRVIRACSNHLLNLINNVLDLSKIESKQMTACAQKMTKEQS*RSC--------TRTSH---------------SAPRLWVMVSE*HR*ISNLITNAVKFTDDGSIHVDIRWEKQTDAGAALEAIIVCLTVTDTGIAVPENSMARLFKPFTQATNNTHSQATGIGLTISKSLAVAMGGSLTCTSKEKEGTKFTFEFVVIGSFTLE-----------------------PESVTCAESPAPVS--------VPLFSETA-----LIVDDNVVNTRVLERMLAKMEVASETAMSGKEAISFCNKRKYGVIFMDKFMPGIDVIESTRPLRR-EGLNRDTVVIFVTADASPESQQEC 1035
            DT   S  KSRF+A++S+E RTPMNGI+G +++LR +   P    E V +I +C   LL +I++VLD+SKI++  M    ++M    +            TR+ H               +A  +    +   + + NL++NA+KFTD+GS+ V +  E     G A     +  +VTDTGI + E++M +LF+PF+Q         TG+GL I++ L   MGG ++C SK   GTKFTF  +  G+                           P++  C ++   +         + +  ET      L+VDDN VN  V  ++L      +E A  G +AI  C+   Y +I MDK MP +D +E+T+ +RR  GLN++T ++F+TA  S E+  EC
Sbjct:  327 DTAKESKFKSRFIADMSHEIRTPMNGIMGSAELLRDQDLNPV-CTEYVSMISSCGTSLLTIIDDVLDMSKIQANMMNIENKQMNTNGTFHDAVHATWAGYTRSPHFKNSVCLNLEISPAATASEVASDSTRIRQIVCNLVSNALKFTDNGSVSVSVDVENGPGEGTAY----IRASVTDTGIGMSESAMKKLFQPFSQVHRGRDVGGTGLGLVITQQLVTLMGGKISCDSKAGLGTKFTFCVLAKGTVNSSRNDQPPLLYTFGTFGGAENVQVCPQNA-CMDTATSIDSHGQSTFDIDMACETGTQPKILVVDDNKVNRLVASKLLQSFGCLTELADHGLQAIEACDVSSYSLIIMDKVMPVMDGVEATKEIRRGNGLNKNTKILFLTATVSTEAILEC 719          
BLAST of mRNA_P-littoralis_Contig776.19.1 vs. uniprot
Match: A0A150WQD1_BDEBC (Histidine kinase n=1 Tax=Bdellovibrio bacteriovorus TaxID=959 RepID=A0A150WQD1_BDEBC)

HSP 1 Score: 171 bits (432), Expect = 3.900e-44
Identity = 124/365 (33.97%), Postives = 188/365 (51.51%), Query Frame = 1
Query:   43 KSRFLANISYETRTPMNGIVGMSDILRHEKGIPAQSVECVRVIRACSNHLLNLINNVLDLSKIESKQMTACAQKMTKEQS*RSCTRTS-----HSAPRLWVMVSE*HR*IS------------------NLITNAVKFTDDGSIHVDIRWEKQTDAGAALEAIIVCLTVTDTGIAVPENSMARLFKPFTQATNNT--HSQATGIGLTISKSLAVAMGGSLTCTSKEKEGTKFTFEFVVIGSFTLEPESVTCAESPAPVSVPLFSE------TALIVDDNVVNTRVLERMLAKMEVASETAMSGKEAISFCNKRKYGVIFMDKFMPGIDVIESTRPLRREGLNRDTVVIFVTADASPESQQECFLA 1044
            KS+FLAN+S+E RTP+NGI+GMS +L  +  +  +  E    IR C   LL ++N++LD SKIE+ +    ++    E    SC   S     H A +  + ++  HR I+                  NLI NAVKFT  G + V +  E   +        ++  +V DTG+ +P + M RLFK F+Q  ++T  H   TG+GL ISK+L   MGGS+   S+   GT F+F      +  L+ E+         VSV  FS       T L+VDDN +N  +   +L KM  +++TA +G EAI   NK+ Y ++ MD  MP +  +E+T  +R+  L     +I +TA+A  E +++C  A
Sbjct:  312 KSQFLANMSHEIRTPLNGIIGMSGLLL-DLSLDKKQTELTHNIRECGESLLEIVNDILDYSKIEANKFELVSEPFNIE----SCIDQSLYILDHRASQKGLTLT--HRAITPLPKVVIGDMGRLKQILVNLIGNAVKFTHQGQVQVKVGAEDLPN-----NETLLSFSVQDTGVGIPPDRMDRLFKSFSQVDSSTSRHYGGTGLGLAISKNLCELMGGSIKVQSEVGVGTTFSF------TVKLKCEADESLIKKKDVSVLTFSPEAASNLTILVVDDNAINRLLAVGLLQKMGFSADTATNGIEAIEAVNKKAYDIVLMDVQMPEMSGLEATDNIRKMKLENQPAIIALTANAMREDEEKCLAA 658          
BLAST of mRNA_P-littoralis_Contig776.19.1 vs. uniprot
Match: UPI001EE9AB30 (PAS domain S-box protein n=1 Tax=Paenibacillus piscarius TaxID=1089681 RepID=UPI001EE9AB30)

HSP 1 Score: 171 bits (432), Expect = 6.760e-44
Identity = 128/367 (34.88%), Postives = 191/367 (52.04%), Query Frame = 1
Query:   16 EDTRSVSTQKSRFLANISYETRTPMNGIVGMSDILRHEKGIPAQSVECVRVIRACSNHLLNLINNVLDLSKIESKQMTACAQKMTKEQS*RSCT-----RTSHSAPRLWV---------MVSE*HR*---ISNLITNAVKFTDDGSIHVDIRWEKQTDAGAALEAIIVCLTVTDTGIAVPENSMARLFKPFTQATN--NTHSQATGIGLTISKSLAVAMGGSLTCTSKEKEGTKFTFEFVVIGSFTLEPESVTCAESPA---PVSVPLF-SETALIVDDNVVNTRVLERMLAKMEVASETAMSGKEAISFCNKRKYGVIFMDKFMPGIDVIESTRPLRR-EGLNRDTVVIFVTADASPESQQECFLA 1044
            E   + +  KS FLA +S+E RTPMNG++GM+D+L  +    +Q  E + +IR     LLN+IN++LDLSKIE+ +++  A+    +    S       +  H    L V         +V +  R    + NL+ NAVKFT  G I V +R      AG  L+      TV DTG  + E + +RLF+PF Q     +  ++ TG+GL ISK L   MGG +   +   EG  F F  V+      E E+V  AE P    P + PL  S   L+V+DN +N  VL +ML K  +A + A  G +A++   ++ Y +IFMD  MPG++ +E+T  +R  E   R  V++ VTA+A    ++ C  A
Sbjct:  376 ETAENTNRAKSEFLAMMSHEIRTPMNGVIGMTDLLLEQSEPGSQQREYLELIRQSGESLLNIINDILDLSKIEAGKISLHAEPFVLQHCLDSALEVLKLKAEHKGLSLQVEVDPEVPQHLVGDGERLKQVLINLVGNAVKFTCTGGIRVSVRRLDGGPAGVTLQ-----FTVADTGRGIKEEARSRLFEPFYQPDEFMSRRAEGTGLGLAISKQLVERMGGRIYLDTTAAEGATFVFTVVL----EAEAEAVP-AEGPGGAMPEAEPLSRSLRILVVEDNAINQTVLRKMLEKRGLAVDVAEDGLQAVAMAAQQSYDLIFMDIQMPGLNGLEATARIRELEAEGRRPVIVAVTANALKGDRELCLQA 732          
BLAST of mRNA_P-littoralis_Contig776.19.1 vs. uniprot
Match: A0A7V5VK59_9BACT (Response regulator n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V5VK59_9BACT)

HSP 1 Score: 164 bits (415), Expect = 9.420e-44
Identity = 120/356 (33.71%), Postives = 190/356 (53.37%), Query Frame = 1
Query:   28 SVSTQKSRFLANISYETRTPMNGIVGMSDILRHEKGIPAQSVECVRVIRACSNHLLNLINNVLDLSKIESKQMTA---------CAQKMTKEQS*RSC-------TRTSHSAPRLWVMVS--E*HR*ISNLITNAVKFTDDGSIHVDIRWEKQTDAGAALEAIIVCLTVTDTGIAVPENSMARLFKPFTQATNNTHSQ--ATGIGLTISKSLAVAMGGSLTCTSKEKEGTKFTFEFVVIGSFTLEPESVTCAESPAPVSVPLFSETALIVDDNVVNTRVLERMLAKMEVASETAMSGKEAISFCNKRKYGVIFMDKFMPGIDVIESTRPLRREGLNRDTVVIFVTADASPESQQEC 1035
            + S  KS FLAN+S+E RTPMNG++GM  +L      P Q  + +R ++  +++LL L+N++LDLSKIE+ +MT           AQ+       R+        TR   +AP  WV+       + ++N I+NA+KFT +GS+ + +        G       V + V DTGI +PE     LF+ FTQA ++T  +   TG+GLTI K LA  MGG +   S+E  G+ F  +  +    T  P++ + +  P  +         L+V+DN VN +V  R+L+K+++  + A++G EA+       Y +I MD  MP +D  E+TR LR  G+   T +I +TA+A    +++C
Sbjct:    4 AASRAKSEFLANMSHEIRTPMNGVLGMVQLLEDTPLTPEQQ-DLLRTLKNSAHYLLGLLNDILDLSKIEAGKMTLERIPVNLHELAQEAVALFGGRASEKGLVLETRIEPNAPE-WVLGDPVRLRQIVANFISNAIKFTHEGSVTLILLPSPTYPQG-------VWMGVQDTGIGIPEEKQTSLFEAFTQADSSTTRKYGGTGLGLTICKRLAEMMGGRIGVESEEGVGSLFYVDLPLPA--TQPPQTQSDSTQPESLPEAFPGRRILLVEDNEVNRKVATRLLSKLQLEVDIAVNGLEAVEKATDNNYDLILMDCQMPEMDGYEATRVLRERGVQ--TPIIALTANALEGDREKC 346          
BLAST of mRNA_P-littoralis_Contig776.19.1 vs. uniprot
Match: A0A238JHM9_9RHOB (Histidine kinase n=1 Tax=Pelagimonas phthalicica TaxID=1037362 RepID=A0A238JHM9_9RHOB)

HSP 1 Score: 168 bits (425), Expect = 1.290e-43
Identity = 123/355 (34.65%), Postives = 184/355 (51.83%), Query Frame = 1
Query:   34 STQKSRFLANISYETRTPMNGIVGMSDILRHEKGIPAQSVECVRVIRACSNHLLNLINNVLDLSKIESKQMTACAQKMTKEQS*RSCTRTSHSAPRLWVMVS------------------------E*HR*ISNLITNAVKFTDDGSIHVDIRWEKQTDAGAALEAIIVCLTVTDTGIAVPENSMARLFKPFTQATNNTHSQ--ATGIGLTISKSLAVAMGGSLTCTSKEKEGTKFTFEFVVIGSFTLEPESVTCAESPAPVSV-PLFSETALIVDDNVVNTRVLERMLAKMEVASETAMSGKEAISFCNKRKYGVIFMDKFMPGIDVIESTRPLRREG--LNRDTVVIF-VTAD 1008
            S  KSRFLAN+S+E RTP+NGI+GM+  L   K + A   +CV VI      LL+ IN+VLDLSK+E       A +M  + S  + T+T  SA  L+   +                        +  + + NLI NAVKFT+ G +++   W  + D+        + + V DTG+ +P  ++ ++F+PF QA ++   +   TG+GL IS+ +  AMGGSLT  S    G+    EF ++    +   +V   E   P  V PL  +  LI DDN  N  +LER L+  +    +A  G+EA++  +  ++ +I MD  MPG+D IE+TR +R E     R  V IF VTA+
Sbjct:  217 SAAKSRFLANVSHEIRTPLNGILGMASELEETK-LDANQRKCVTVINNSGAVLLDTINDVLDLSKVE-------AGRMDLKDSNFNLTKTLQSAYDLYAPKAREKGLTFTLDISGQVPNSVRADERKLQQVLHNLIANAVKFTEGGRVNIVATWNTEADS--------ITVKVLDTGVGIPSEALNKIFEPFVQADSSVTRKFGGTGLGLAISRQIIEAMGGSLTVESTLGRGS----EFRILLPLRVHSNAVPTREEKKPTDVVPLHGKRVLITDDNATNRLILERFLSPSDCIVYSASGGEEAVTLASDTEFDLILMDIQMPGVDGIEATRRIRAEESETGRARVPIFAVTAN 551          
BLAST of mRNA_P-littoralis_Contig776.19.1 vs. uniprot
Match: UPI0018DB4355 (PAS domain S-box protein n=3 Tax=sulfur-oxidizing endosymbiont of Gigantopelta aegis TaxID=2794934 RepID=UPI0018DB4355)

HSP 1 Score: 171 bits (432), Expect = 1.630e-43
Identity = 133/368 (36.14%), Postives = 194/368 (52.72%), Query Frame = 1
Query:    1 VDAKWEDTRSVSTQKSRFLANISYETRTPMNGIVGMSDILRHEKGIPAQSVECVRVIRACSNHLLNLINNVLDLSKIESKQMTACAQ-----KMTKEQS*RSCTRTSHSAPRLWVMVSE*------------HR*ISNLITNAVKFTDDG--SIHVDIRWEKQTDAGAALEAIIVCLTVTDTGIAVPENSMARLFKPFTQATNNTHSQATGIGLTISKSLAVAMGGS-LTCTSKEKEGTKFTFEFVVIGSFTLEPESVTCAESPAPVSVPLFSE----TALIVDDNVVNTRVLERMLAKMEVASETAMSGKEAISFCNKRKYGVIFMDKFMPGIDVIESTRPLRR----EGLNRDTVVIFVTADASPE 1020
            + AK E     +  KS FL+N+S+E RTP+NG++G + IL+++K +  + +E +  I++C +HLL LIN+VLDLSKIES  M          K+ K        R S    +L V++ E              + + NL+ NAVKFT  G  S+HV + ++KQ       E+  VC  V DTGI +PE     +F  F QA     +  TG+GL IS+ L   MGG+ +T  S+  EG+ F+F   +I     E E VT +E      +P   +    TALIVDD  VN  +LER+L      + +A +GKEA++   K KY +I MD  MP +D I + + +R+    E   +  V+I VTA   PE
Sbjct:  632 ISAK-EVAEEANKAKSEFLSNMSHELRTPLNGVLGYAQILQNDKQVTHEQMESLDAIKSCGHHLLTLINDVLDLSKIESGNMAFTISAVDLPKLVKGVYDMVIHRASAKGVKLDVIMQEGLPKGIKTDATKLRQVLVNLLGNAVKFTHSGTISLHVSV-YDKQ-------ESPNVCFVVADTGIGIPEEKHQIIFDAFKQAKEGMDAGGTGLGLAISQRLIQEMGGTEITLQSQYGEGSAFSFCLPLIEVSDDELE-VTYSEHYDDSVIPKLPDGLQLTALIVDDRQVNRDILERLLQASGFKTMSANNGKEAVAMSQKYKYPLILMDIRMPEMDGIHAAKLIRQSMEQEESQQKLVIIAVTAGVFPE 989          
BLAST of mRNA_P-littoralis_Contig776.19.1 vs. uniprot
Match: A0A4P6AS09_9ALTE (Histidine kinase n=1 Tax=Alteromonas sp. KUL49 TaxID=2480798 RepID=A0A4P6AS09_9ALTE)

HSP 1 Score: 169 bits (429), Expect = 1.980e-43
Identity = 121/356 (33.99%), Postives = 193/356 (54.21%), Query Frame = 1
Query:   19 DTRSVSTQKSRFLANISYETRTPMNGIVGMSDILRHEKGIPAQSVECVRVIRACSNHLLNLINNVLDLSKIESKQMTACAQKMTKEQS*RSC-----TRTSHSAPRLWVMVSE*------------HR*ISNLITNAVKFTDDGSIHVDIRWEKQTDAGAALEAIIVCLTVTDTGIAVPENSMARLFKPFTQATNNTHSQ--ATGIGLTISKSLAVAMGGSLTCTSKEKEGTKFTFEFVVIGSFTLEP--ESV-TCAESPAPVSVPLFSETALIVDDNVVNTRVLERMLAKMEVASETAMSGKEAISFCNKRKYGVIFMDKFMPGIDVIESTRPLRREGLNRDTVVIFVTADASPE 1020
            +    S  KS+FL+N+S+E RTPMN ++G + +    KG   Q  E +R I     HLL++IN++LD +KIES   T  +      +S R        R      ++ V + +              + + NL+ NA+KFTDDGS+ + +  + +TD G  L+     + VTDTGI + E  +A+LF  FTQA N+   +   TG+GLTI+K L   M G++   S+  +G+  TF F     F+ EP  E V T    P+ +   L  ++ L+V+DN +N  V+ERML  + +  + A++G+EA++   K KYG++ MD  MP +D I++TR +R+   N    +I ++A A+ E
Sbjct:  397 EAEEASLAKSQFLSNMSHELRTPMNAVLGFAQVGIEAKG-EHQKNEYLRKIGQSGEHLLSVINDILDFNKIESNTFTLESTSFRINRSLRRVLDMCLVRADEKGLKVKVQLDKAIPKHLIGDPFRLEQILINLLGNAIKFTDDGSVSIKVDLQDKTDNGVTLK-----IAVTDTGIGIAEAHLAQLFSEFTQADNSITRKYGGTGLGLTITKQLVERMHGNIHVESQLGKGS--TFSFTAKFEFSDEPMIEPVKTDNVDPSQLVNALAGKSVLLVEDNEINRLVVERMLEPIALNLDVAVNGEEAVAMVKKNKYGLVLMDVQMPVLDGIDATRAIRQ--FNTSMAIIGLSAHANTE 742          
BLAST of mRNA_P-littoralis_Contig776.19.1 vs. uniprot
Match: A0A7W4BRQ1_9GAMM (Histidine kinase n=5 Tax=unclassified Shewanella TaxID=196818 RepID=A0A7W4BRQ1_9GAMM)

HSP 1 Score: 169 bits (427), Expect = 3.760e-43
Identity = 115/343 (33.53%), Postives = 192/343 (55.98%), Query Frame = 1
Query:   43 KSRFLANISYETRTPMNGIVGMSDILRHEKGIPAQSVECVRVIRACSNHLLNLINNVLDLSKIESKQMTACAQKM---TKEQS*RSCTRTSHSAPRLWVMVSE*HR*IS-------------NLITNAVKFTDDGSIHVDIRWEKQTDAGAALEAIIVCLTVTDTGIAVPENSMARLFKPFTQATNNT--HSQATGIGLTISKSLAVAMGGSLTCTSKEKEGTKFTFEFVVIG-SFTL-EPESVTCAESPAPVSVPLFSETALIVDDNVVNTRVLERMLAKMEVASETAMSGKEAISFCNKRKYGVIFMDKFMPGIDVIESTRPLRREGLNRDTVVIFVTADA 1011
            KS+FLAN+S+E RTP+NGI+G+ D+L  ++ + +Q    +  ++  SN LL ++N++LD+SK+E+ ++T  ++     T  QS  S   T+  A  L + +S   + +S             NL++NA+KFT  GSI++   ++  +D       + V +T+TDTGI +PE  +  + +PFTQ  N+   HS  TG+GL IS +L   M G+LT  S+E+ GT+     ++IG  FTL +P     A   + +++   +   L+ DD+  N  V++ M  K++   +    G EA+    K KY VI MD +MP +D I ++  +R + L + T +I  TA+A
Sbjct:  410 KSKFLANVSHEVRTPLNGIIGLLDVLVDDEELNSQQQFYLTTMQDSSNSLLQILNDILDVSKMEAGKLTLVSEPFNLTTTLQSACSLMNTNAEASGLSLSLSLPEQELSLLGDPGRIRQLVLNLLSNAIKFTKVGSINLTATYDVVSDT-----QVNVTITITDTGIGIPETMLNHILEPFTQVDNSAIKHSSGTGLGLAISNNLVKLMQGTLTINSQEQSGTE-----IIIGIPFTLAKPAEYNSATLISNLNLRDRNVKILLADDDKTNQLVMQAMCDKLQCNIDIVNDGIEAVEAAKKLKYDVILMDIYMPRMDGITASTLIRADSLCQTTPIIAFTANA 742          
BLAST of mRNA_P-littoralis_Contig776.19.1 vs. uniprot
Match: A0A7C2EWI1_9BACT (Hybrid sensor histidine kinase/response regulator n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C2EWI1_9BACT)

HSP 1 Score: 166 bits (420), Expect = 4.970e-43
Identity = 122/360 (33.89%), Postives = 188/360 (52.22%), Query Frame = 1
Query:   25 RSVSTQKSRFLANISYETRTPMNGIVGMSDILRHEKGIPAQSVECVRVIRACSNHLLNLINNVLDLSKIESKQMTACAQK-----MTKEQS*RSCTRTSHSAPRLWVMVS------------E*HR*ISNLITNAVKFTDDGSIHVDIRWEKQTDAGAALEAIIVCLTVTDTGIAVPENSMARLFKPFTQATNNTHSQ--ATGIGLTISKSLAVAMGGSLTCTSKEKEGTKFTFEFV--VIGSFTLEPESVTCAESPAPVSVPLFSETALIVDDNVVNTRVLERMLAKMEVASETAMSGKEAISFCNKRKYGVIFMDKFMPGIDVIESTRPLRR--EGLNRDTVVIFVTADASPESQQEC 1035
            ++ S  KSRFLA +S+E RTPMNGI+GM  +L  +  +  +  E +R ++ C+ HLL L+N++LDL+++E+ + T    K     + KE       +     P L   +                + ++NL+ NA+KFT +GS  V +R E+Q   G  L  +     V DTGI +P   +A +F+PFTQA ++T  Q   TG+GLTISK L  AM G +   S+  +G+ F FE    V+    LEP       S    ++P+     L+V+DN VN +V  RML  M    + A +G+EA+    K  Y ++ MD  MP +D  E+TR +R   +G  +  ++I +TA A    +  C
Sbjct:  189 QAASEAKSRFLATMSHEIRTPMNGILGMGQLLL-QTPLNEEQCEYLRTLQGCAEHLLALLNDILDLARLEAGKFTLSRTKFDLHTLVKEVVVLFKAKAVQQGPALTATIDPDVPPYVRGDPVRLRQILANLVGNAIKFTHEGS--VALRVERQP--GEQLRFM-----VQDTGIGIPPEKIATIFEPFTQADDSTTRQHGGTGLGLTISKQLVEAMSGRIGVESEVGKGSTFWFEIPLEVVDQGELEPPP-----SSPETALPIPRLHVLVVEDNEVNRKVATRMLEGMGCRVDIATNGREAVEMTAKHTYDLVLMDCQMPEMDGYEATRLIREREQGTGQHLLIIALTAHALSGDRDRC 533          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig776.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A3Z1C6_9SYNE1.890e-4734.38PAS protein n=2 Tax=Synechococcus sp. WH 5701 TaxI... [more]
Q8QKV7_ESV1K1.280e-4632.08Histidine kinase n=1 Tax=Ectocarpus siliculosus vi... [more]
A0A150WQD1_BDEBC3.900e-4433.97Histidine kinase n=1 Tax=Bdellovibrio bacteriovoru... [more]
UPI001EE9AB306.760e-4434.88PAS domain S-box protein n=1 Tax=Paenibacillus pis... [more]
A0A7V5VK59_9BACT9.420e-4433.71Response regulator n=1 Tax=Armatimonadetes bacteri... [more]
A0A238JHM9_9RHOB1.290e-4334.65Histidine kinase n=1 Tax=Pelagimonas phthalicica T... [more]
UPI0018DB43551.630e-4336.14PAS domain S-box protein n=3 Tax=sulfur-oxidizing ... [more]
A0A4P6AS09_9ALTE1.980e-4333.99Histidine kinase n=1 Tax=Alteromonas sp. KUL49 Tax... [more]
A0A7W4BRQ1_9GAMM3.760e-4333.53Histidine kinase n=5 Tax=unclassified Shewanella T... [more]
A0A7C2EWI1_9BACT4.970e-4333.89Hybrid sensor histidine kinase/response regulator ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig776contigP-littoralis_Contig776:28098..29165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog366602.Caul_4759
PFAMsHATPase_c,HisKA,Response_reg
Model size1044
Max annot lvl204458|Caulobacterales
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.33e-22
EggNOG OGsCOG0642@1|root,COG0784@1|root,COG0784@2|Bacteria,COG2205@2|Bacteria,1R5I4@1224|Proteobacteria,2TX3G@28211|Alphaproteobacteria,2KHZS@204458|Caulobacterales
Descriptionresponse regulator
Cds size531
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791599.1728218-CDS-P-littoralis_Contig776:28097..284271680791599.1728218-CDS-P-littoralis_Contig776:28097..28427Pylaiella littoralis U1_48CDSP-littoralis_Contig776 28098..28427 -
1680791599.190558-CDS-P-littoralis_Contig776:28451..286521680791599.190558-CDS-P-littoralis_Contig776:28451..28652Pylaiella littoralis U1_48CDSP-littoralis_Contig776 28452..28652 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791599.210117-UTR-P-littoralis_Contig776:28652..291651680791599.210117-UTR-P-littoralis_Contig776:28652..29165Pylaiella littoralis U1_48UTRP-littoralis_Contig776 28653..29165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig776.19.1prot_P-littoralis_Contig776.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig776 28098..28652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig776.19.1

>prot_P-littoralis_Contig776.19.1 ID=prot_P-littoralis_Contig776.19.1|Name=mRNA_P-littoralis_Contig776.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=177bp
MARLFKPFTQATNNTHSQATGIGLTISKSLAVAMGGSLTCTSKEKEGTKF
TFEFVVIGSFTLEPESVTCAESPAPVSVPLFSETALIVDDNVVNTRVLER
MLAKMEVASETAMSGKEAISFCNKRKYGVIFMDKFMPGIDVIESTRPLRR
EGLNRDTVVIFVTADASPESQQECFLA
back to top

mRNA from alignment at P-littoralis_Contig776:28098..29165-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig776.19.1 ID=mRNA_P-littoralis_Contig776.19.1|Name=mRNA_P-littoralis_Contig776.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1068bp|location=Sequence derived from alignment at P-littoralis_Contig776:28098..29165- (Pylaiella littoralis U1_48)
GTGGACGCCAAGTGGGAAGATACACGAAGTGTGTCAACGCAGAAGTCGCG TTTTCTGGCCAACATTTCCTACGAGACACGGACGCCGATGAATGGTATCG TAGGGATGAGCGACATACTTAGACATGAAAAAGGAATACCCGCACAGTCT GTCGAATGTGTGCGAGTGATAAGAGCGTGTAGTAATCACCTGTTGAATCT GATCAACAACGTTCTCGACCTTTCGAAGATTGAGTCGAAACAGATGACCG CGTGTGCGCAGAAAATGACAAAGGAACAGAGTTGACGATCGTGTACGAGA ACGTCCCACTCGGCGCCGAGGTTGTGGGTGATGGTCTCAGAATAACACAG GTAAATCTCCAACCTCATTACCAACGCCGTTAAGTTCACCGACGATGGAT CCATTCATGTTGACATCCGCTGGGAAAAACAAACTGATGCCGGTGCTGCG CTGGAAGCCATTATCGTTTGTCTGACAGTGACTGACACGGGTATCGCAGT ACCGGAAAACTCAATGGCTCGGTTGTTCAAACCTTTCACACAGGCCACCA ACAACACCCATAGTCAAGCCACGGGTATCGGGCTTACAATTTCGAAGTCG CTCGCTGTGGCGATGGGTGGAAGTCTGACGTGCACGAGCAAAGAGAAAGA GGGGACCAAATTCACATTTGAGTTCGTTGTGATCGGTAGTTTCACATTGG AACCGGAAAGCGTTGTCATTGAAAATTGACCACACCAGACCTGCGCCGAA AGTCCAGCGCCTGTTTCTGTCCCACTTTTTTCAGAAACTGCGCTGATCGT TGACGACAATGTTGTGAATACAAGAGTTTTGGAAAGAATGTTGGCGAAGA TGGAGGTCGCCTCCGAGACAGCGATGAGCGGAAAAGAAGCCATTTCCTTT TGCAACAAACGCAAATACGGTGTGATTTTCATGGACAAGTTTATGCCAGG AATCGATGTTATCGAGAGTACCAGGCCTCTTAGACGCGAGGGTTTAAATA GAGATACGGTCGTTATATTCGTTACGGCGGACGCTTCTCCCGAATCTCAA CAGGAGTGTTTTTTGGCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig776:28098..29165-

>mRNA_P-littoralis_Contig776.19.1 ID=mRNA_P-littoralis_Contig776.19.1|Name=mRNA_P-littoralis_Contig776.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=531bp|location=Sequence derived from alignment at P-littoralis_Contig776:28098..29165- (Pylaiella littoralis U1_48)
ATGGCTCGGTTGTTCAAACCTTTCACACAGGCCACCAACAACACCCATAG
TCAAGCCACGGGTATCGGGCTTACAATTTCGAAGTCGCTCGCTGTGGCGA
TGGGTGGAAGTCTGACGTGCACGAGCAAAGAGAAAGAGGGGACCAAATTC
ACATTTGAGTTCGTTGTGATCGGTAGTTTCACATTGGAACCGGAAAGCGT
TACCTGCGCCGAAAGTCCAGCGCCTGTTTCTGTCCCACTTTTTTCAGAAA
CTGCGCTGATCGTTGACGACAATGTTGTGAATACAAGAGTTTTGGAAAGA
ATGTTGGCGAAGATGGAGGTCGCCTCCGAGACAGCGATGAGCGGAAAAGA
AGCCATTTCCTTTTGCAACAAACGCAAATACGGTGTGATTTTCATGGACA
AGTTTATGCCAGGAATCGATGTTATCGAGAGTACCAGGCCTCTTAGACGC
GAGGGTTTAAATAGAGATACGGTCGTTATATTCGTTACGGCGGACGCTTC
TCCCGAATCTCAACAGGAGTGTTTTTTGGCG
back to top