mRNA_P-littoralis_Contig776.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig776.2.1
Unique NamemRNA_P-littoralis_Contig776.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig776.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig776contigP-littoralis_Contig776:1872..6337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size192
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791598.6081142-CDS-P-littoralis_Contig776:1871..19041680791598.6081142-CDS-P-littoralis_Contig776:1871..1904Pylaiella littoralis U1_48CDSP-littoralis_Contig776 1872..1904 +
1680791598.6204605-CDS-P-littoralis_Contig776:6179..63351680791598.6204605-CDS-P-littoralis_Contig776:6179..6335Pylaiella littoralis U1_48CDSP-littoralis_Contig776 6180..6335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig776.2.1prot_P-littoralis_Contig776.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig776 1872..6335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig776.2.1

>prot_P-littoralis_Contig776.2.1 ID=prot_P-littoralis_Contig776.2.1|Name=mRNA_P-littoralis_Contig776.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=63bp
LAGEKANPIPPGGRVPFSAREAAPDIVANKLMKGSRFEDGGGRKFVANKI
AGNGDCLFNSVAF
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mRNA from alignment at P-littoralis_Contig776:1872..6337+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig776.2.1 ID=mRNA_P-littoralis_Contig776.2.1|Name=mRNA_P-littoralis_Contig776.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4466bp|location=Sequence derived from alignment at P-littoralis_Contig776:1872..6337+ (Pylaiella littoralis U1_48)
CTGGCCGGGGAAAAAGCAAACCCCATCCCCCCGGTGAGTCGTGTTGGACG
TATCATGTCATACAGAAAGGCCTCCGTACATACAAACGAATCCGCATTAC
TCTTCCCTGCTTTCGAAGGAGGTTTGTCCTACCGTTGTGCAAGTTGTTGA
TACGGATGGTGTGCACAAAGCCAATAGGATCGGCCGTTTATATTAAAGCA
ACTTTAATCGGAATCGAAAATATTAGTGGGTAGCCAAACTTGCTCCCGCA
CATGCGGCGCATCAAGCAGATTTTTTATTTCGCCCTTATTATTCCGGAAG
CTGAAGGAAAGGGTGGAATCGAAGAAGTCCGAGTTTGTAGTCTAAAATGC
AGCTCAAAAATCGATTTGACCTAGAACACGAGCAGAGAGGTTTTTGCTGT
GCTTTCTGGGAGTACATAGGTGCACATCGATGTGTCTTTGCGTAGTCGGT
CACAGCCCAACTTGCATCCCCCTGTACGTATGTGTGACCTCGGCGAAAGC
TGGTGTTCCGTAGATTACTAGAAAGGGGAAAGGAATTGAGAAGCAGTGTG
CGTTGGAGGGCCGCTTCTCAAATATCTGCCTTACGCCCTGTGCGTTGCTG
TTTGTTGGCGAATGATATGGCTGCTGCTTCACAGCAGTGCTGCTACTGCA
GAACACAGCTGGTGGTGTGCTGGTGTGCGTGCGCGCCAGCGCAACGAACA
CGAAAAGCCTCTCGTCATTTTTCACAAAAAAGGGACCCTATTAATAACTC
GCCTCCGACAAGATAGCTGTGCGCACAGGACACGGGCCGCGGTGAACCCA
GCAGCAGTGGGTAGATGCTATTTACCTCATCAGTTGAAGCCCTTGGTCGT
AGCGATCTGTGATGAACTGGTGCCAAAGTGTTGCAAAATGTGGCCAATAT
CTCGGACACACACACAGACAGACACACAGACACCATAAACCTCCAAAATT
AAACAAAGGCATCCCTGTCTCCGCTTTTTGTTTTAGAAGTATTCGCACAT
ACACTCACACCTGCACATCACGACAAGTCGGTATGAATTCCAAGGAGTTG
GACACCGAAGTTACACTTCGCTGCGCTCGTGGACTCCTTCTCAATACTAG
TCTTGGGTGGTACGAAGGAGCCCCCCCCGGGATCGCGATTAAGGGGGCTC
CTTCCTAACTGCATTAAGCAAGCTGCGCTGCTGCCGAAAGCCTGCTTTCG
ATTTTGTTTCCTCTGCTTTCCAACCCCCCCCTCAGACAACATCAGTCATC
AAAAACAACATGGTGTGGGCCCCTGTTTTTTTTTTTTTGTTTTTTTTTTG
GGCGAGACATGTCGTTTGCAGCAACCGTACAGCAGCGATTTCTCGGCGTA
GACGACAGCCGTGCCTCTACCAAGCTGGTCCGACACGGACAGTGCCATGT
AGATGTGGAAAAGTCTGCTGTATCGTGCTGCTGATGGCCGTGGGTGTGCG
TTCCGCTGGGTGCGTGCTACTGCTGAGGGCGTGTTATCCAACGTCTCGTA
GAAACTAGATTTACAGCAGTAGCGACAAACATCGTAGAGCAGCGATTTCT
CGGCGTAGACGACAGCTGTGCCTCTACCGAGCTGGTCCGACTCGGACAGT
GCCACGTAGAGGTGGATAAGTCTGCTGTATGGTGCTGCTGATGGCCGTGG
GTGTGTGTGCGTTCTGGTTGTGGAATGGCACTGCTGGGGAGGTGGTATCT
GGCGTACGCACAGCAGAAAATAGCACGGTTGTGGGCAGCTCGGCGGCCAC
CGCGGTCGATTTGCGCAAGGACGCAGGCACCAGTGAGGAATTACTATTTT
TCTCGTGCGTTCAAGCCCGGGGTCGCTCCGATCCGTGAAGAATTGGCCGC
GTAAGCAACGAAAAAGTGGCCTATTTAGGGCACAGACAGACAAACAGACA
AACAGACAGACACCAAAAACATCGATTTGGTAAATTTGGGTCGCTAGGCA
TGTTTTTTTCCCAATCTTTCCCACCGTCTCCCTCGCACACACACACACAC
ACACACACACACACACATCACGACCCACTATATTTAGGAGCCTTTGGCCC
CGACTTTCTTACAGAAAGCACGGTGCCCGGCGACTTCGTCGCCGGTGGGC
TCCTTCCTACAAATCTCTTCGTTCGAGCGTATTCTGATGAGAATCCGGAG
AGCACCACTCAAGTGTGCAGACGTATGCAGACAGCAGTAGTTGTTGCTCT
CTACATTACTCTCATGCCGGTGGTGGTGCTGTGCATTTCGATTACAACAT
CGGTATGATCTTACTCACGATACCACAACACAACTTGTAGCTGCCTGCTT
TACACAAACGGTACCTCCACACGAAGATAGTATCGCCAATTGCAAAGAAG
GAAAACTGTCGGAGCGGAGTCTGAGGAGCTGAGGAGCTCATCCGAGTTCA
ATGTCGTCGCCCTGCATGATATGTAGGTATGTACAACGGCAGAAATCATG
GGACTCTGAAAAGGGTGAGGACTACCAACGCGCCTGAGTTAGGCCGATGT
AGGGCACTATCGTGGATTACGTTAGAGGTACGGTAGCTCCCGCACTAACT
AGCCTTACAATTGTCACAGCATACGTTTTACGACCGTCTATCCTCTGACT
TGCTGGCCGTGCCTCTTCCTATTCATGTATTGTACCTCCGCCTTGTTAGA
TTTTTGATGAACGCAGCCGTAGCTGCGTGGACCCAACCCCATTTCTCAAA
CTGAAGCAAGCTGTGTTGTGCCGTTCCTGAAAGCAGCCTGGAAAAACATT
GGTCCTCAAAAACACGAAGCATCGAATGCAGCTGCGGAGGCCGCTGTGTT
CGTGTGTTTATATCCCATCGGTTTTGGTCACCAGTCTCCACCTTCCTACA
TACGTTCGGCTTACCAGCCGCGGTTGGTCTCACACAAGATGATGCATTTC
AGGAATTCGAGTTTGTTCCAAGAGCTCCTTACCCAATTTAACCCAACGCT
AAATCCGACGCAACCTCATCGGAATCTGCGGTGGAGGAGTGGTTCATCGC
GGAATACTCAAACTGAGCATGCCGATCAAGCAACGCACACACATTCAGTT
CCAACTGTTGTCGACAGCACTTTGCCACCACATACTCCCAGCCTTCCATC
ACAAGACCCATACAACCGCCGCGTGCCTTCGCACGTGGTGTGGTGTGTGG
CAGAGCTGCTTGTGGTTGTTGGTCGCTTTTGTGTTGATCTCGCGCCAAAA
GAAAAAACGTTACCTACTGTTAAGAAGGGCTAGGGGGCCTGCTAACATAG
CGAGGAATTTCACAAAATGATGGCATGACGTGTCCTTTTACTTACAAGCC
AGCATCCTAGACAACGGGGCCTTGTGACGCTGAGTGCCCAAGGTCGTCTG
CGGAGCTGTACTTGATCCTGCCCAACGTTATGGGCACACAGCAGAGGGCA
GCGAGTTTGCTCATATTTCGGCGTTGATCGCCAAGTTTTATCTGACCCAT
GAGGGAAACCAGGGTGTGTACCTTGGTGGCTGTACAACCCAACAAAATGT
GTGAAATTGGTAGCAGCACTACAGAGTTGACGATATAGGCTCTACAACGT
GGCCTAAAAGCGCCCCAAACCATGATGAACTGCATTTGTTTACTAGGTTG
AGCATTCTGAAACAGAACAACTCGCAATGTTCCTTGGAATCAGCAATACA
TCGATGACGATCAAAAAATGCCCTGAAGGCGACCCAAACCACTCTGGACT
CTGTGGTTTAATAGGTTGAAATTTCCTTGAAAGTTTTGAAGCAAGGACAA
CATGTCTACCTCGAAAAATGTCGCCAACATTTCATTGTTTCGTGCTCCAT
AACGACTTTTGATCAAAGTTGTGCACTCGAAGTATTGAATTTCCGAAACC
GGTTGAAACTCGGAGGTTGTGTAGCTTGGTCGATGCACTACCCGACAAAC
GTAGGTAGAGTTTGGGATCAGCACAACAGCTCGTCAACCAGCAGATTGAT
TTGCATGTGTCACAGGAAAATTTACGTTGTTCGCTCCATGTAATGATAAA
ATTGGATAAAATTTGTCTTGTCGCTTTAAATAAGAAGGCGATTTCATATT
GTTTCCTATAGGCAGCAGCACGTGTCTCCGTTGCCGAGGATGGCATAGTT
TAATGAACGTGCGTGGTTAGGGGCTCACTGTCACGAGGCACCGCGGACAG
ACAGACTGGCGGAGGACCTAAAGCTTAAAACCACGTGCGCATGTGTTCTC
CACGAGCCATACAAACTCCAAAACGTGTGTGACTCGATGATTCATAACTG
CAGTTCTTCGTACGTCGCCTACCGTGCGCACGGGTGCGTACTACTGTAAA
CCTGCCAGGGCGGGAGAGTCCCATTCTCCGCGCGCGAGGCGGCACCTGAT
ATAGTGGCGAACAAGCTAATGAAGGGATCGAGGTTCGAGGATGGCGGAGG
TCGCAAATTTGTTGCCAACAAAATCGCGGGTAACGGCGATTGCTTGTTCA
ACTCGGTTGCGTTCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig776:1872..6337+

>mRNA_P-littoralis_Contig776.2.1 ID=mRNA_P-littoralis_Contig776.2.1|Name=mRNA_P-littoralis_Contig776.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig776:1872..6337+ (Pylaiella littoralis U1_48)
CTGGCCGGGGAAAAAGCAAACCCCATCCCCCCGGGCGGGAGAGTCCCATT
CTCCGCGCGCGAGGCGGCACCTGATATAGTGGCGAACAAGCTAATGAAGG
GATCGAGGTTCGAGGATGGCGGAGGTCGCAAATTTGTTGCCAACAAAATC
GCGGGTAACGGCGATTGCTTGTTCAACTCGGTTGCGTTC
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