mRNA_P-littoralis_Contig774.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig774.19.1
Unique NamemRNA_P-littoralis_Contig774.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig774.19.1 vs. uniprot
Match: D7FRQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRQ8_ECTSI)

HSP 1 Score: 411 bits (1057), Expect = 5.940e-129
Identity = 377/587 (64.22%), Postives = 410/587 (69.85%), Query Frame = 3 
Query:  339 MAASELSELRDELWRTRDDLERMKSRGTPTNADQSPQRLFDRR-NRTSPTSSXXXXXXXXXXTVARDGKERTDHNHRRPHWHEGVGVTHKKENRDGVGGGEGDVG--IRSGPTSPPTSGDSSPGSGTDNNRNGGNRGRLGVGRKGGGGGGLKTVVRDGRKLR-SSSRGV--STSSGGENAAQE-SPEEVAAEETISNLELEGAAFKNWTEEASSIAIRLIEEVKMLRWEKAGWADRERAAESEAAGLRA----RADRLAERLRSAEADGRRSQQALTRAQQEMVREQARTTGERAKGDALRAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGS-LLEMLRREKEGADALQRRLDAARAASARHERERKEWRSSRXXXXXXXXXXGKGLKKVEKKLRFIAKENAALRARVAKAERARDRADADALHHRDALRRLTEQRDNLLLGATRLGGGKGGRDLSGSSPADALAELLAAXXXXXXXXXXXXXXTGGSERHRVRADELETELAQARSEAKLARVAAQQERLEREAAAREKEEAVRQLHRLMGAARRAVARRDSRLKSSRLETEVVWNALTEAVR 2063
            MAASELSELR ELWRTRDDLER+KSRGTP +AD SP+R FDRR +R SP+ +             RD +      HR    H+G G+       +  GG  GD G  IRS P          PGSG D +     RG  G    G   GG        R+L+  SSRG   S SS GENAA+  S EEVAAEET+ NLELEGAAFKNWTEEASSIA+RLIEEVKMLRWEKA WA+RERAAE            +AD L ERL  AEADGRR+Q+AL RAQQ++ R            + LRAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    L+EMLRREKEGADALQRRLDAARAASARHE+ERKEWRSS XXXXXXXXXX             + KENAALRARV +AERARDRADAD+L HR+ LRRLTEQRDNLLLGATRLGG +G   L  SSPA+ LAELLAAXXXXXXX           E        LE +L QARSEAKLARVAAQQERL REAAAREKEEAVRQLHRLMGAARRAV RRDSRLKSSR+ETEVVWNALTEAVR
Sbjct:    1 MAASELSELRAELWRTRDDLERIKSRGTPPSADCSPRRHFDRRRHRASPSPTLAATTACEVRNKDRDYRR-----HRHSEQHKGDGL-------EAGGGARGDSGGGIRSXPXXXXXXXXXXPGSGADYDDE-APRGLGGTASSGSSHGG--------RQLKFGSSRGRVGSASSEGENAAKGGSSEEVAAEETLCNLELEGAAFKNWTEEASSIAVRLIEEVKMLRWEKASWAERERAAEXXXXXXXXXXXXQADHLEERLGLAEADGRRAQEALARAQQDVERXXXXXXXXXXXAEGLRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVEMLRREKEGADALQRRLDAARAASARHEKERKEWRSSXXXXXXXXXXXXXXXXXXXXXXXXMTKENAALRARVGEAERARDRADADSLGHREELRRLTEQRDNLLLGATRLGGRRG---LVASSPAETLAELLAAXXXXXXXDATDVGPGADGE--------LEAQLEQARSEAKLARVAAQQERLRREAAAREKEEAVRQLHRLMGAARRAVGRRDSRLKSSRMETEVVWNALTEAVR 555
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig774.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRQ8_ECTSI5.940e-12964.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig774contigP-littoralis_Contig774:35385..39610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3057
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_003480.1
Cds size1728
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791596.659661-UTR-P-littoralis_Contig774:35384..363751680791596.659661-UTR-P-littoralis_Contig774:35384..36375Pylaiella littoralis U1_48UTRP-littoralis_Contig774 35385..36375 -
1680791596.7195783-UTR-P-littoralis_Contig774:38675..388981680791596.7195783-UTR-P-littoralis_Contig774:38675..38898Pylaiella littoralis U1_48UTRP-littoralis_Contig774 38676..38898 -
1680791596.7323425-UTR-P-littoralis_Contig774:39495..396101680791596.7323425-UTR-P-littoralis_Contig774:39495..39610Pylaiella littoralis U1_48UTRP-littoralis_Contig774 39496..39610 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791596.680883-CDS-P-littoralis_Contig774:36375..369331680791596.680883-CDS-P-littoralis_Contig774:36375..36933Pylaiella littoralis U1_48CDSP-littoralis_Contig774 36376..36933 -
1680791596.7058032-CDS-P-littoralis_Contig774:37505..386751680791596.7058032-CDS-P-littoralis_Contig774:37505..38675Pylaiella littoralis U1_48CDSP-littoralis_Contig774 37506..38675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig774.19.1prot_P-littoralis_Contig774.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig774 36376..38675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig774.19.1

>prot_P-littoralis_Contig774.19.1 ID=prot_P-littoralis_Contig774.19.1|Name=mRNA_P-littoralis_Contig774.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=576bp
MAASELSELRDELWRTRDDLERMKSRGTPTNADQSPQRLFDRRNRTSPTS
SPAAAAAAAAATVARDGKERTDHNHRRPHWHEGVGVTHKKENRDGVGGGE
GDVGIRSGPTSPPTSGDSSPGSGTDNNRNGGNRGRLGVGRKGGGGGGLKT
VVRDGRKLRSSSRGVSTSSGGENAAQESPEEVAAEETISNLELEGAAFKN
WTEEASSIAIRLIEEVKMLRWEKAGWADRERAAESEAAGLRARADRLAER
LRSAEADGRRSQQALTRAQQEMVREQARTTGERAKGDALRAAAAAAAAAA
AAAAAAQEKERIQQQQQQQMEAEGGGGGGGGRGSLLEMLRREKEGADALQ
RRLDAARAASARHERERKEWRSSRARLEELRRSWGKGLKKVEKKLRFIAK
ENAALRARVAKAERARDRADADALHHRDALRRLTEQRDNLLLGATRLGGG
KGGRDLSGSSPADALAELLAAAAGVVADAAGGGGGTGGSERHRVRADELE
TELAQARSEAKLARVAAQQERLEREAAAREKEEAVRQLHRLMGAARRAVA
RRDSRLKSSRLETEVVWNALTEAVR*
back to top

mRNA from alignment at P-littoralis_Contig774:35385..39610-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig774.19.1 ID=mRNA_P-littoralis_Contig774.19.1|Name=mRNA_P-littoralis_Contig774.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4226bp|location=Sequence derived from alignment at P-littoralis_Contig774:35385..39610- (Pylaiella littoralis U1_48)
GCGGGTGATGTGGACGCGGTGATCGATGCAACCGCTCCTCAGCTGCAGCT
CTTCCTCGGTCGGGGGTGTGTAGGCCATCGTCAAATGGTCTGGGCTGAAG
CGGGTCGTGCAGCAGGTAAGCGTACTGCTTCATTTTTCCATTTTTTTCTG
TGCCTGCTGTGTCGGAGAAGACCTGTTTCTTCATCAGCAGGAGAAGCAGG
GAACGTTTTTTAGTGATACGAACACAAAAATGAGGCAACCGCTCTGCCTC
GATGTGGATACTACTGCTGCTGTACAGCAGTTAGTCGGCCACTCGCCCCA
GCGATTGAAGTAGCTTCCAAGCGTGGGAGTACGAGTACTATGAGACGTAG
CAAAAGGGCGCTGTGGCCTCTACAAATTATTTCTCGTAGACAGTTTGTGG
TGTTTGGCGGAAACTCCGACGTCCAAAACCTGTAACGCGTGTCCAACAAG
CCCGCTACATGACATGATGCGAGTAACGTTCATATCGTTGTCACTCCAGA
CAATTTACTCCTGTCATTCGAACCAACGACACAGCCGTACGGCCCAGCGT
TGGACCGGGAGACAGCGAACTTTGAGGGCATTCGTTTGAGCAAACAGCCA
TTCCTAAGGTAGAGCTGTAGCCTTTTATCACGATAGAATTGCACAAAGGA
CAGGTTGCAAGACGGCGGACGTTTCCTCAACCTCTCTCTCCAATGTCATG
TTATCTCTCCAGGTCGGCTGCGAACAGCTACATGCTTGAACCAGGTTTCC
CTTGTGAGGGGGGGCTAAAGCAACATAGCCAGGGCCAAGGAGTGCCGCAA
GACGGAAAGAGGGATACAACGCCCAGGCGCCCGGCTCACACGGGAAGTGT
CGCAGTGGGAACACGGTACTCTCTAAGGTAGCATCTACAGCAGATAGTTG
CATTCCTGCCTGCAGCTGTCTGAAACGGAAGAGACATGGCGGCGTCGGAG
CTGTCGGAGCTGCGCGACGAGCTGTGGCGAACTCGCGACGACCTCGAGCG
CATGAAGTCTCGTGGTACGCCGACGAACGCAGACCAATCACCCCAACGCC
TTTTCGATCGTCGCAACCGCACTTCACCAACGTCTTCTCCTGCTGCTGCT
GCTGCTGCGGCTGCTGCCACCGTTGCTAGAGACGGGAAAGAAAGGACGGA
TCATAACCATCGACGACCGCACTGGCACGAAGGTGTTGGAGTGACGCACA
AGAAAGAAAACCGCGACGGGGTCGGCGGTGGTGAGGGGGATGTGGGAATC
AGAAGCGGACCCACCAGCCCGCCGACAAGCGGAGATTCGTCACCAGGGTC
AGGCACTGACAACAATCGCAACGGTGGTAACAGAGGTCGTTTGGGGGTGG
GAAGGAAGGGCGGTGGCGGCGGCGGACTAAAAACAGTGGTACGAGATGGC
CGAAAGCTCAGAAGTAGCAGTCGGGGCGTGAGCACAAGCTCGGGCGGCGA
GAACGCAGCGCAGGAATCCCCAGAGGAGGTTGCGGCGGAAGAAACTATCT
CCAACCTGGAGCTCGAGGGGGCCGCGTTCAAGAACTGGACGGAGGAAGCC
TCGTCCATCGCCATCCGCCTCATCGAGGAGGTCAAGATGCTCCGCTGGGA
GAAGGCCGGCTGGGCGGACAGGGAGCGCGCGGCCGAGAGCGAGGCAGCAG
GGCTGAGGGCGCGGGCTGACCGCCTGGCGGAACGCCTCCGCTCGGCCGAG
GCGGACGGGAGGAGGTCGCAGCAGGCGTTGACAAGGGCGCAGCAGGAGAT
GGTAAGAGAGCAGGCGCGGACGACGGGGGAGCGAGCGAAGGGAGACGCTC
TCCGAGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCA
GCGCAGGAGAAGGAGAGAATACAGCAGCAGCAACAGCAGCAGATGGAGGC
GGAAGGCGGTGGTGGTGGTGGTGGTGGACGAGGCAGTTTGCTGGAGATGT
TGAGACGCGAGAAAGAGGGAGCGGACGCACTGCAGCGAAGGCTGGATGCG
GCGAGGGCGGCGTCAGCGCGGCACGAGAGGGAGAGAAAGGAGTGGCGGTC
TTCCAGGGCGAGGCTAGAGGAGCTCCGACGGTCGTGGGGGAAGGGGCTGA
AGAAGGTGGGTTTGGGAAGTTGCTTTCATTCCATCCGTGGGTCACGATTG
CACCACTGGACGCGGCTGTAGCCTGAGACACCTCGTAGAGGCAGCAGCGG
CGGCAGGCATTAGGTTATGCATAACTACAGCGGAAAACTCTTATTACGTG
GTGTATAAATGGAAAGGTCACTCTCGTTACAGGGGGGCACTATCCTATCC
TCCCAAGGGCAACCACACAAAGTGCGACCATATTTGGAAACTATTGGTTA
ACAGAGGGTTTAGATCCGTCGTAAGACTTCAATGCAGCCACTTCACGGCT
AGGATGTTGGTTGTGACTGAATTTTGCTCTCCTCCGAGACCAGGTATACA
CTCAGACACTAACTTCGACTTGTTTTTTTCGCCTTTATTATTGTGGTGGG
ACATGGGCGGCGAGGGGGAGGGGGTCGGACAGCCCCACGACTTTTGTGGT
ATTGGCAATTTTGAACCCTCTTCGGGTGTCTCGAGAATATTTTTCTATTC
GGTCTTCCCCAATCTCACACCCAGCCCATGACTCATCACCACTCACTGGT
CAAATCAACTCTGCCCTCCCCTCTCAGGTTGAGAAGAAGTTGCGATTCAT
TGCAAAGGAGAACGCCGCGCTCCGTGCCAGGGTCGCGAAGGCAGAGCGAG
CGAGGGACCGTGCCGACGCCGACGCCCTCCACCACCGAGACGCGCTGCGG
CGGCTTACCGAACAGCGAGACAACCTCCTCCTTGGCGCCACCCGCCTCGG
CGGAGGGAAGGGGGGGCGAGATCTGTCCGGCTCCTCACCGGCGGACGCTT
TGGCGGAGCTCCTGGCCGCTGCCGCCGGTGTGGTCGCAGACGCCGCTGGC
GGCGGCGGCGGCACCGGCGGTAGCGAACGGCATAGGGTCCGGGCGGATGA
GCTCGAGACGGAGCTGGCGCAGGCGAGGTCGGAGGCGAAACTCGCTAGGG
TGGCGGCGCAGCAAGAGCGGCTTGAGCGGGAAGCGGCGGCGAGGGAGAAG
GAGGAAGCGGTGCGGCAGCTGCATCGGCTGATGGGGGCGGCGAGGCGGGC
GGTGGCGCGGAGGGACTCGCGGCTGAAATCCAGCCGGCTGGAGACTGAAG
TTGTGTGGAACGCGCTAACGGAGGCCGTCCGCTGACAAGCTGCAGTCGCA
CTTTCTCACTGCACAAATTTTAGACTCTGGGTGCCTTTTTTTGCGTACGA
CAGCTGTGCACGCGGCTCTTCGATGCTCATGTTGATAGCGTTCGCGTGTT
CTCAGATCGCAAAGTTGTTGAACGTTGATTCGGAAGGACAGAACAGCAGT
TGCTTTACAGCAGGCACATGTACGTGTGGTCTTTGGTGACCATTTTGCCT
AGCCTAATTCTAGTCTAATCCGCATTTGTCGCATGTCTGCTGCTTTTTTG
TCATGATGGCGCATGTTTATCTTCGAAGAGCTCACACGAACAGCAGCAAG
CAACTGTTACAAAAAAATAGGCGCACGGTAAGAAAGAGCCTGACGGGGTG
TTTTGTGGGCCGGGGTGGGGGCAGTCTAGACTTACCGCAGCCCCTTGGGG
ACTACGGTGAGGACAAGAAAACACGCGCCGTATGCAGGAAGGGTGGCAGA
TCAATAGTGTGTACCAGGTGTGTACGAGCACGCATGTGTATCAACCAGGC
GTTGCAATCATATTAAAGACTACATTTTTTGCTCGATACGAGAGATGCGT
CTCTCCTATCGACTGGAAAATACAAACTCCTTGTATTTCTATTTGCTGCA
AGGTGGCGTGGCGATTCAAAACTCGTGGCAGAAAGAAGCCGAGTATTTTA
CCGACGACATGCACCCACGGTGTCGCCGATCACGAGAACACCTAAGCGCT
GGTGGTCGTTTACACATTGAACGATTCGCTCATCGGGGGTGCATCAACAG
AAGGAAGTTATGCTGGATACGCTCGAGAAATTCGACCGACTCTCGAAGTG
TTTGATCGCATCGCAGTTTGCTTGACTGCTGTGCAACGGATGTACAGGTG
TGCAAGATTATTCTAGGAAATAATTCGTTTTTGTAGTATGTATCATACGT
GGTCACTTTTGTGTTCAACTCAATGTTTCGTTTTGAATTCACCAAACGAA
CTTAGATTCGGAGGAGTCTTTCTGAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig774:35385..39610-

>mRNA_P-littoralis_Contig774.19.1 ID=mRNA_P-littoralis_Contig774.19.1|Name=mRNA_P-littoralis_Contig774.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1728bp|location=Sequence derived from alignment at P-littoralis_Contig774:35385..39610- (Pylaiella littoralis U1_48)
ATGGCGGCGTCGGAGCTGTCGGAGCTGCGCGACGAGCTGTGGCGAACTCG
CGACGACCTCGAGCGCATGAAGTCTCGTGGTACGCCGACGAACGCAGACC
AATCACCCCAACGCCTTTTCGATCGTCGCAACCGCACTTCACCAACGTCT
TCTCCTGCTGCTGCTGCTGCTGCGGCTGCTGCCACCGTTGCTAGAGACGG
GAAAGAAAGGACGGATCATAACCATCGACGACCGCACTGGCACGAAGGTG
TTGGAGTGACGCACAAGAAAGAAAACCGCGACGGGGTCGGCGGTGGTGAG
GGGGATGTGGGAATCAGAAGCGGACCCACCAGCCCGCCGACAAGCGGAGA
TTCGTCACCAGGGTCAGGCACTGACAACAATCGCAACGGTGGTAACAGAG
GTCGTTTGGGGGTGGGAAGGAAGGGCGGTGGCGGCGGCGGACTAAAAACA
GTGGTACGAGATGGCCGAAAGCTCAGAAGTAGCAGTCGGGGCGTGAGCAC
AAGCTCGGGCGGCGAGAACGCAGCGCAGGAATCCCCAGAGGAGGTTGCGG
CGGAAGAAACTATCTCCAACCTGGAGCTCGAGGGGGCCGCGTTCAAGAAC
TGGACGGAGGAAGCCTCGTCCATCGCCATCCGCCTCATCGAGGAGGTCAA
GATGCTCCGCTGGGAGAAGGCCGGCTGGGCGGACAGGGAGCGCGCGGCCG
AGAGCGAGGCAGCAGGGCTGAGGGCGCGGGCTGACCGCCTGGCGGAACGC
CTCCGCTCGGCCGAGGCGGACGGGAGGAGGTCGCAGCAGGCGTTGACAAG
GGCGCAGCAGGAGATGGTAAGAGAGCAGGCGCGGACGACGGGGGAGCGAG
CGAAGGGAGACGCTCTCCGAGCAGCGGCAGCGGCAGCGGCAGCGGCAGCG
GCAGCGGCAGCGGCAGCGCAGGAGAAGGAGAGAATACAGCAGCAGCAACA
GCAGCAGATGGAGGCGGAAGGCGGTGGTGGTGGTGGTGGTGGACGAGGCA
GTTTGCTGGAGATGTTGAGACGCGAGAAAGAGGGAGCGGACGCACTGCAG
CGAAGGCTGGATGCGGCGAGGGCGGCGTCAGCGCGGCACGAGAGGGAGAG
AAAGGAGTGGCGGTCTTCCAGGGCGAGGCTAGAGGAGCTCCGACGGTCGT
GGGGGAAGGGGCTGAAGAAGGTTGAGAAGAAGTTGCGATTCATTGCAAAG
GAGAACGCCGCGCTCCGTGCCAGGGTCGCGAAGGCAGAGCGAGCGAGGGA
CCGTGCCGACGCCGACGCCCTCCACCACCGAGACGCGCTGCGGCGGCTTA
CCGAACAGCGAGACAACCTCCTCCTTGGCGCCACCCGCCTCGGCGGAGGG
AAGGGGGGGCGAGATCTGTCCGGCTCCTCACCGGCGGACGCTTTGGCGGA
GCTCCTGGCCGCTGCCGCCGGTGTGGTCGCAGACGCCGCTGGCGGCGGCG
GCGGCACCGGCGGTAGCGAACGGCATAGGGTCCGGGCGGATGAGCTCGAG
ACGGAGCTGGCGCAGGCGAGGTCGGAGGCGAAACTCGCTAGGGTGGCGGC
GCAGCAAGAGCGGCTTGAGCGGGAAGCGGCGGCGAGGGAGAAGGAGGAAG
CGGTGCGGCAGCTGCATCGGCTGATGGGGGCGGCGAGGCGGGCGGTGGCG
CGGAGGGACTCGCGGCTGAAATCCAGCCGGCTGGAGACTGAAGTTGTGTG
GAACGCGCTAACGGAGGCCGTCCGCTGA
back to top