mRNA_P-littoralis_Contig772.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig772.2.1
Unique NamemRNA_P-littoralis_Contig772.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig772.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig772contigP-littoralis_Contig772:8059..9736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size584
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791594.2408383-UTR-P-littoralis_Contig772:8058..80951680791594.2408383-UTR-P-littoralis_Contig772:8058..8095Pylaiella littoralis U1_48UTRP-littoralis_Contig772 8059..8095 -
1680791594.2715242-UTR-P-littoralis_Contig772:8446..85011680791594.2715242-UTR-P-littoralis_Contig772:8446..8501Pylaiella littoralis U1_48UTRP-littoralis_Contig772 8447..8501 -
1680791594.2823167-UTR-P-littoralis_Contig772:9595..97361680791594.2823167-UTR-P-littoralis_Contig772:9595..9736Pylaiella littoralis U1_48UTRP-littoralis_Contig772 9596..9736 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791594.2605906-CDS-P-littoralis_Contig772:8095..84461680791594.2605906-CDS-P-littoralis_Contig772:8095..8446Pylaiella littoralis U1_48CDSP-littoralis_Contig772 8096..8446 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig772.2.1prot_P-littoralis_Contig772.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig772 8096..8446 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig772.2.1

>prot_P-littoralis_Contig772.2.1 ID=prot_P-littoralis_Contig772.2.1|Name=mRNA_P-littoralis_Contig772.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
MNRPTTRTRRPPWRPHRPLPAPPLSALLPPILQHLAPTPPSTPVLTRTLL
LLASVLLRLLALSCTLLLSPMPAPVLLRLQPPLHPLSLSTRRLHALLPSG
ARPQLRLQLPLPLPLL*
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mRNA from alignment at P-littoralis_Contig772:8059..9736-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig772.2.1 ID=mRNA_P-littoralis_Contig772.2.1|Name=mRNA_P-littoralis_Contig772.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1678bp|location=Sequence derived from alignment at P-littoralis_Contig772:8059..9736- (Pylaiella littoralis U1_48)
GTCAACCAAAAGATCTATCTACCGTCAAGAGTTGAAGCAATACCCGTGAG
TGAGTGAGCTAGCAAGACTGGCCACGAACTATCCTGCGCGTTACAAGAGA
GGGCCCCCTTTCTCTTCACATCTGGCGTCAACGCTACCGAGGTACAGTCT
GTGACTTTTGCGCTTGTGCGTTCTTTGGTTTCCGAGGTCGCTACTTTGAA
ACCAATACACTCGCCGTCGATCACGCATTGCCACTGCTGTATCGCCTGGT
TTGCACGCTCTCTCCTCTGATTTTGCTCCTCCTTTCACATATCTCTTCAA
CACAAGAGAGACTCCACTCTGTGAAGCGTACAACCCCGCGCTTGCACAGT
ACAGTTGTTGTTGCGCGTTCGCAGCTTTTGCGCGCTGGCACCTTTCAGTT
GTTGTTTCGCGTCCACAGCATGTCGACTTGGTGTGGCATCGACCATTTTA
CTTCAGATCAGTACGAGGAGTTGAGGCAATTTTTCTCCTCCCCTTTATCA
CTTGAACGTACAGTCGTCAACACGATTGATCACGCTTCTACTGCTGTATC
TAGTGACGGTCCTCCTGGTTCGAGTGCCGCTCCACACATTGTTCAAGACG
CTTTACGCAGCACGACATTGCTCTCTGCATATGATGTAGCCACACCACAC
TTGGGCACCCTTAGTGTCGTACAAGTTGCTGCTACAGTGCTGCTGCCGCT
GCCCGCGCTTGATACTGTACCATTTCAGTACTGTTGCCATGATGATAGTG
CCTTGCCCGCTCCTCTTCGGCACGGCGCCCACACCCGTGCACCCCTCCGC
CTTGCTCAGCGTGCAGCGGATTGGCCTGTAGTGGCCTCGGACCTTTTTCC
GTCGTCTACCTTTTGCCAACATCTACAGTACGGTCTAGTTGGTGTCGAAC
TCTCCACCGCCACGCTGGCTCCACGCTTCACACCCCGTTTCGGCCCAGTC
TCCAGCGCCGTTTCGGTGGGCTGGGATGACTTCAGCCGCGGCATACCTTC
GCGCACCGCCCGTTTTACCAGAGGCCGCACCGATGCACTTACGGTCCTTG
ATCACCACTACTGGCATGACCTTTTCCTTTCCCCACGTAGGTTTACAGAT
TTTTACTACCTGTCCACCGCTGTGTGGCCCTGGAAAACTTCTTTTTTGCA
GGCCTTCCTTAGATCGCTCCCTGATCATGCTCGTGAATTTCTGCCGCATG
CTCCTCCAACATATTCTGCCCTTCCTCCTTCGCAGCTCCACACCACGCCG
TCTCCCCGCGCCGACCCAGACGACTCGGATCTGGTGGACTATGAACCGAC
CGACGACCCGGACTCGCCGCCCGCCGTGGAGGCCACATCGACCGCTGCCG
GCGCCGCCCCTGTCGGCGCTGCTGCCACCAATTCTCCAGCACCTGGCGCC
GACACCCCCATCAACGCCTGTGCTGACGCGGACGCTCCTTCTGCTGGCGT
CCGTGTTGCTTCGTCTGCTGGCCCTGTCGTGCACACTGCTGCTGTCGCCG
ATGCCGGCGCCCGTGCTACTTCGGCTGCAGCCGCCGCTGCACCCTCTTTC
GCTGTCGACACGACGTTTACACGCACTGCTGCCGTCGGGAGCTCGCCCGC
AGCTTCGGCTTCAGCTGCCGCTGCCGCTGCCGCTGTTGTAGACTTCGCAG
TGCACACCGCTGCCACCGCTCCTTTTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig772:8059..9736-

>mRNA_P-littoralis_Contig772.2.1 ID=mRNA_P-littoralis_Contig772.2.1|Name=mRNA_P-littoralis_Contig772.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig772:8059..9736- (Pylaiella littoralis U1_48)
ATGAACCGACCGACGACCCGGACTCGCCGCCCGCCGTGGAGGCCACATCG
ACCGCTGCCGGCGCCGCCCCTGTCGGCGCTGCTGCCACCAATTCTCCAGC
ACCTGGCGCCGACACCCCCATCAACGCCTGTGCTGACGCGGACGCTCCTT
CTGCTGGCGTCCGTGTTGCTTCGTCTGCTGGCCCTGTCGTGCACACTGCT
GCTGTCGCCGATGCCGGCGCCCGTGCTACTTCGGCTGCAGCCGCCGCTGC
ACCCTCTTTCGCTGTCGACACGACGTTTACACGCACTGCTGCCGTCGGGA
GCTCGCCCGCAGCTTCGGCTTCAGCTGCCGCTGCCGCTGCCGCTGTTGTA
G
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