mRNA_P-littoralis_Contig771.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig771.10.1
Unique NamemRNA_P-littoralis_Contig771.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig771.10.1 vs. uniprot
Match: D7FLR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR6_ECTSI)

HSP 1 Score: 343 bits (881), Expect = 2.220e-112
Identity = 170/173 (98.27%), Postives = 170/173 (98.27%), Query Frame = 1
Query:   25 GGATLGTGANQVGSAPTNSAAATARRAIPGAPSPARAYGFCFGLGADGKGLAGKLKQLFAGENGFGRGPITTDGCNAPKFGEAGVTKSDRFSWKLDDHDNLILPVHNSNSYGGKHPRCQIGGVVPVERVKGSWRLCPWAYRYVSTGRVVQQITHNQRHNGAQQKGSDKKRAQK 543
            GGATLGTGANQVGSAPTNSAAATARRAIPGAPSPARAYGFCFGLGADGKGLAGKLKQLFAGENGFGRGPITTDGCNAPKFGEAGVT SDRFSW LDDHDNLILPVHNSNSYGGKHPRCQIGGVV VERVKGSWRLCPWAYRYVSTGRVVQQITHNQRHNGAQQKGSDKKRAQK
Sbjct:  487 GGATLGTGANQVGSAPTNSAAATARRAIPGAPSPARAYGFCFGLGADGKGLAGKLKQLFAGENGFGRGPITTDGCNAPKFGEAGVTNSDRFSWTLDDHDNLILPVHNSNSYGGKHPRCQIGGVVLVERVKGSWRLCPWAYRYVSTGRVVQQITHNQRHNGAQQKGSDKKRAQK 659          
BLAST of mRNA_P-littoralis_Contig771.10.1 vs. uniprot
Match: A0A6H5KU43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU43_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 1.360e-74
Identity = 120/166 (72.29%), Postives = 134/166 (80.72%), Query Frame = 1
Query:   46 GANQVGSAPTNSAAATARRAIPGAPSPARAYGFCFGLGADGKGLAGKLKQLFAGENGFGRGPITTDGCNAPKFGEAGVTKSDRFSWKLDDHDNLILPVHNSNSYGGKHPRCQIGGVVPVERVKGSWRLCPWAYRYVSTGRVVQQITHNQRHNGAQQKGSDKKRAQK 543
            G + VG AP+N AAA  R+ IP  P+PA+A GFCFG+GADG GLA KLKQLFAGENGFG+GPITT GC+ PKFGEAGVTKSDRFSW+LD+   LILP HN+N+ GGKHP CQIGG VPVE+V GSWRLC WA  YVSTGRVVQ+ITHN RHN A QK   KKRA K
Sbjct:  389 GESVVGGAPSNGAAARLRKHIPDPPNPAKARGFCFGIGADGVGLAEKLKQLFAGENGFGKGPITTKGCHTPKFGEAGVTKSDRFSWQLDEDGCLILPPHNTNNPGGKHPTCQIGGTVPVEKVNGSWRLCSWALPYVSTGRVVQKITHNARHNNAPQKSRGKKRALK 554          
BLAST of mRNA_P-littoralis_Contig771.10.1 vs. uniprot
Match: D7FWV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV7_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 7.720e-60
Identity = 105/171 (61.40%), Postives = 125/171 (73.10%), Query Frame = 1
Query:   22 IGGATLGTGANQVGSAPTNSAAATARRAIPGAPSPARAYGFCFGLGADGKGLAGKLKQLFAGENGFGRGPITTDGCNAPKFGEAGVTKSDRFSWKLDDHDNLILPVHNSNSYGGKHPRCQIGGVVPVERVKGSWRLCPWAYRYVSTGRVVQQITHNQRHNGAQQKGSDKKR 534
            + GA LGTGANQVGSAP++ AAA  R+ IPG  +P RA+GFCFG GADG GL  KL   FAG+NGFG GPIT  GC  P F EAGVTK  + +W+LD+HDNLILPVH+S    G HPRCQ+GG VPVE+V  SWRLC WA +Y+   R+VQ+I+ +QRHNGA  K   K R
Sbjct:  384 VAGAALGTGANQVGSAPSDGAAAKMRKPIPGQLNPVRAHGFCFGFGADGVGLPQKLHDKFAGKNGFGDGPITEGGCEIPNFSEAGVTKG-KSTWQLDEHDNLILPVHSSIETEG-HPRCQLGGCVPVEKVNESWRLCHWALKYILARRIVQRISQSQRHNGAPAKSRAKGR 552          
BLAST of mRNA_P-littoralis_Contig771.10.1 vs. uniprot
Match: A0A6H5L5E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E5_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 2.190e-55
Identity = 98/163 (60.12%), Postives = 114/163 (69.94%), Query Frame = 1
Query:   46 GANQVGSAPTNSAAATARRAIPGAPSPARAYGFCFGLGADGKGLAGKLKQLFAGENGFGRGPITTDGCNAPKFGEAGVTKSDRFSWKLDDHDNLILPVHNSNSYGGKHPRCQIGGVVPVERVKGSWRLCPWAYRYVSTGRVVQQITHNQRHNGAQQKGSDKKR 534
            GANQVGSAP+N AAA  R+ IPG  +P + YGFCFG GADG GL  KL   FAGENGFG GPIT  GC  P F EAGVTK +  +W+LD+HD LILPVH+ N   G HP C IGG VPVE+V  SWRLC WA +Y+   R+V ++T N RHNGA +K   K R
Sbjct:  437 GANQVGSAPSNGAAAKVRKPIPGQRNPVKEYGFCFGFGADGVGLDQKLHDKFAGENGFGDGPITEGGCEIPNFSEAGVTKGES-TWQLDEHDYLILPVHSGNKTEG-HPACTIGGCVPVEKVNESWRLCHWALKYILNRRIVSKVTQNARHNGAGEKSRAKGR 597          
BLAST of mRNA_P-littoralis_Contig771.10.1 vs. uniprot
Match: A0A6H5K7M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M5_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 3.780e-50
Identity = 92/163 (56.44%), Postives = 111/163 (68.10%), Query Frame = 1
Query:   46 GANQVGSAPTNSAAATARRAIPGAPSPARAYGFCFGLGADGKGLAGKLKQLFAGENGFGRGPITTDGCNAPKFGEAGVTKSDRFSWKLDDHDNLILPVHNSNSYGGKHPRCQIGGVVPVERVKGSWRLCPWAYRYVSTGRVVQQITHNQRHNGAQQKGSDKKR 534
            GANQVGSAP++ AAA  R+ IPG  +P +A+GFCFGLGA G GLA KL   FA E+GF  GPIT  GC  P F EAGVT+  +  W+ D+HD LILPVH+     G HPR  IGG V VE+V  SWRLC W  +Y+   R+V +IT NQRHNGA +K   K+R
Sbjct:  223 GANQVGSAPSDGAAAKMRKPIPGQLNPVKAHGFCFGLGAGGVGLAQKLYDKFASEHGFEEGPITEGGCETPNFSEAGVTEG-KSKWEHDEHDKLILPVHSGIRTDG-HPRYVIGGCVSVEKVNESWRLCHWVLKYILARRIVPKITQNQRHNGAPEKSYAKRR 383          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig771.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FLR6_ECTSI2.220e-11298.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU43_9PHAE1.360e-7472.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWV7_ECTSI7.720e-6061.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5E5_9PHAE2.190e-5560.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7M5_9PHAE3.780e-5056.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig771contigP-littoralis_Contig771:73683..74781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size553
Hectar predicted targeting categoryother localisation
Exons2
Cds size546
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791593.5840414-UTR-P-littoralis_Contig771:73682..736891680791593.5840414-UTR-P-littoralis_Contig771:73682..73689Pylaiella littoralis U1_48UTRP-littoralis_Contig771 73683..73689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791593.601515-CDS-P-littoralis_Contig771:73689..742071680791593.601515-CDS-P-littoralis_Contig771:73689..74207Pylaiella littoralis U1_48CDSP-littoralis_Contig771 73690..74207 -
1680791593.6119595-CDS-P-littoralis_Contig771:74753..747811680791593.6119595-CDS-P-littoralis_Contig771:74753..74781Pylaiella littoralis U1_48CDSP-littoralis_Contig771 74754..74781 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig771.10.1prot_P-littoralis_Contig771.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig771 73690..74781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig771.10.1

>prot_P-littoralis_Contig771.10.1 ID=prot_P-littoralis_Contig771.10.1|Name=mRNA_P-littoralis_Contig771.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=182bp
ISDTPGGIGGATLGTGANQVGSAPTNSAAATARRAIPGAPSPARAYGFCF
GLGADGKGLAGKLKQLFAGENGFGRGPITTDGCNAPKFGEAGVTKSDRFS
WKLDDHDNLILPVHNSNSYGGKHPRCQIGGVVPVERVKGSWRLCPWAYRY
VSTGRVVQQITHNQRHNGAQQKGSDKKRAQK*
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mRNA from alignment at P-littoralis_Contig771:73683..74781-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig771.10.1 ID=mRNA_P-littoralis_Contig771.10.1|Name=mRNA_P-littoralis_Contig771.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1099bp|location=Sequence derived from alignment at P-littoralis_Contig771:73683..74781- (Pylaiella littoralis U1_48)
ATCTCGGACACTCCAGGGGGGATCGGAGGTAAGACGATTCGGGACTTGTT ACATCCTTTGCAACCGACAGAACGCGATGCCTTAAGAGCGAGCAACTGGT GCATGGTTGGATTGAACCTATTCCCCCCGCCCGTCGTGTTCGTCGCAGGC GTTTCTGTCTGCGTGTTATTGTTGTTCTTTCATTCTCTACGCCCGTTCCA TTCCGACCCGCCCCCGCCTTTCATGATACGATAGTTTACCCGACGCGAAC CAACTCATCCCGGCTCCATGCTCCACTGGTTGTGTTGATACGGTTGAGTG CGTCTGACCCGTTGAATGCAAGGATGTTGTTGCGTCGAATGCGTCCACTC GCCTGCTATTGTACTTCGTGTGCGTCCGCAAGTCTGTGGGCGTTTGGAAC TTCCAGAGGGTGCTACAAAAGGGAAAAAATGCCACTGGGGTAGCCCGACG CATCGAGGTCCATCGCTATTTCTTTAGTGTGCCCGAATTGTACGTATGTG ATCCCAGGCTTCGCAATAGCATGATCACCTTTTCTTTTCCTCTCGTCGGA TACTGTCGTCAACGCGTGGAAAAGGTGCGACCTTGGGAACAGGGGCGAAC CAGGTGGGAAGCGCCCCCACTAACAGTGCAGCGGCCACCGCGCGCAGGGC CATCCCCGGCGCGCCCAGCCCTGCTAGAGCCTATGGCTTTTGCTTTGGTT TGGGTGCGGATGGCAAGGGTCTCGCCGGGAAGCTCAAGCAACTGTTTGCC GGTGAAAACGGTTTCGGGAGAGGGCCAATCACCACGGACGGGTGCAACGC ACCCAAGTTCGGAGAGGCGGGAGTGACAAAGTCCGACAGATTCTCGTGGA AGCTTGACGACCACGACAATCTCATCCTCCCCGTCCACAACAGCAACAGC TACGGCGGGAAGCACCCTAGGTGCCAAATCGGAGGTGTTGTCCCCGTTGA GAGGGTCAAGGGATCGTGGCGACTATGCCCATGGGCGTATCGGTACGTCT CGACTGGGAGGGTCGTGCAACAGATCACGCACAACCAACGCCACAACGGG GCACAACAGAAGGGCAGCGACAAGAAGAGGGCGCAGAAGTAGTGAGTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig771:73683..74781-

>mRNA_P-littoralis_Contig771.10.1 ID=mRNA_P-littoralis_Contig771.10.1|Name=mRNA_P-littoralis_Contig771.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=546bp|location=Sequence derived from alignment at P-littoralis_Contig771:73683..74781- (Pylaiella littoralis U1_48)
ATCTCGGACACTCCAGGGGGGATCGGAGGTGCGACCTTGGGAACAGGGGC
GAACCAGGTGGGAAGCGCCCCCACTAACAGTGCAGCGGCCACCGCGCGCA
GGGCCATCCCCGGCGCGCCCAGCCCTGCTAGAGCCTATGGCTTTTGCTTT
GGTTTGGGTGCGGATGGCAAGGGTCTCGCCGGGAAGCTCAAGCAACTGTT
TGCCGGTGAAAACGGTTTCGGGAGAGGGCCAATCACCACGGACGGGTGCA
ACGCACCCAAGTTCGGAGAGGCGGGAGTGACAAAGTCCGACAGATTCTCG
TGGAAGCTTGACGACCACGACAATCTCATCCTCCCCGTCCACAACAGCAA
CAGCTACGGCGGGAAGCACCCTAGGTGCCAAATCGGAGGTGTTGTCCCCG
TTGAGAGGGTCAAGGGATCGTGGCGACTATGCCCATGGGCGTATCGGTAC
GTCTCGACTGGGAGGGTCGTGCAACAGATCACGCACAACCAACGCCACAA
CGGGGCACAACAGAAGGGCAGCGACAAGAAGAGGGCGCAGAAGTAG
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