mRNA_P-littoralis_Contig77.117.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig77.117.1
Unique NamemRNA_P-littoralis_Contig77.117.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig77.117.1 vs. uniprot
Match: D7FZQ8_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ8_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 7.030e-20
Identity = 79/250 (31.60%), Postives = 118/250 (47.20%), Query Frame = 2 
Query:   38 LNALVRKSFTLGLLNDRELLDQLQFRGDDMVEQGGHPAAVLRVFSEMLPNKRHVSRETTFRDRGKLRDINKL---------HSASTAVS--GAAHGYPGPSHLAAHHAARVAASSTAPQPRSRGSSVRGGGGRYSSAGTSVPLPFTPSVLP-PTATARRPAHQGGSARGNGRGA-SAPXXXXXXXXXADRKRYTDKLRENQQAMTSSPNADRCHNCADKGRVDLHHHKACAFSLCRRCKRGGHRAVDCTF 748
            L A +R +  +GL++ + +L +  FRG  +++    P +VL VFS  L N + V+ ET   D  +++ + K+         H  +T  S   A  G P PS     +AA   A S A  PR+   +V           +S+P P    VLP P         +GG  RG G G+ S P         A    +  +++  Q+ +   P   +C+NCA+K R   HHH  CA+S+C RC RGGHRA  CT+
Sbjct:  177 LLAAIRLAAEIGLVDTQRVLQRTLFRGRKLLDASFDPQSVLSVFSRKLSNAQGVTAETLLGDLQEMKLVRKMNGRHGQASTHQTTTKPSYARARGGIPFPS----PYAAAAPAGSVAGPPRAASMAV-----------SSLPAPV---VLPLPKKKGASGRKRGGGLRGPGAGSLSGPSPQRSPRELAALADFNAQIQAVQEKLPEIPGGPQCNNCANKARNRFHHHFTCAYSICTRCGRGGHRAAACTY 408
[Close]
BLAST of mRNA_P-littoralis_Contig77.117.1 vs. uniprot
Match: D7G5U8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U8_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.570e-18
Identity = 49/120 (40.83%), Postives = 75/120 (62.50%), Query Frame = 2 
Query:   11 EDWFTFSQHLNALVRKSFTLGLLNDRELLDQLQFRGDDMVEQGGHPAAVLRVFSEMLPNKRHVSRETTFRDRGKLRDINKLHS----ASTAVSGAAHGYPGPSHLAAHHAARVAASSTAP 358
            EDW++F  H++A++ K  TLGL+  R +LD   +RG+DM+ Q G P  V  +F++++PN R++SRETT RDR +L+ I+ +      A+T  +    GY G    AA  A+ +AA  TAP
Sbjct:  199 EDWYSFKPHVDAIIAKGVTLGLMTWRSMLDDFVYRGNDMLLQFGVPEKVFGIFTDLMPNARNISRETTLRDRSRLKAIDTISGGWKLAATLATAHLSGYAGAYQQAASQASTIAAGITAP 318
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZQ8_ECTSI7.030e-2031.60CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G5U8_ECTSI1.570e-1840.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:480216..481063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size848
Hectar predicted targeting categoryother localisation
Exons1
Cds size642
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791591.6021516-UTR-P-littoralis_Contig77:480215..4803391680791591.6021516-UTR-P-littoralis_Contig77:480215..480339Pylaiella littoralis U1_48UTRP-littoralis_Contig77 480216..480339 +
1680791591.6231856-UTR-P-littoralis_Contig77:480981..4810631680791591.6231856-UTR-P-littoralis_Contig77:480981..481063Pylaiella littoralis U1_48UTRP-littoralis_Contig77 480982..481063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791591.6128736-CDS-P-littoralis_Contig77:480339..4809811680791591.6128736-CDS-P-littoralis_Contig77:480339..480981Pylaiella littoralis U1_48CDSP-littoralis_Contig77 480340..480981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.117.1prot_P-littoralis_Contig77.117.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig77 480340..480981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig77.117.1

>prot_P-littoralis_Contig77.117.1 ID=prot_P-littoralis_Contig77.117.1|Name=mRNA_P-littoralis_Contig77.117.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=214bp
MVEQGGHPAAVLRVFSEMLPNKRHVSRETTFRDRGKLRDINKLHSASTAV
SGAAHGYPGPSHLAAHHAARVAASSTAPQPRSRGSSVRGGGGRYSSAGTS
VPLPFTPSVLPPTATARRPAHQGGSARGNGRGASAPPPPPSNAAAADRKR
YTDKLRENQQAMTSSPNADRCHNCADKGRVDLHHHKACAFSLCRRCKRGG
HRAVDCTFPPYRG*
back to top

mRNA from alignment at P-littoralis_Contig77:480216..481063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig77.117.1 ID=mRNA_P-littoralis_Contig77.117.1|Name=mRNA_P-littoralis_Contig77.117.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=848bp|location=Sequence derived from alignment at P-littoralis_Contig77:480216..481063+ (Pylaiella littoralis U1_48)
GTCCAACACAGAAGATTGGTTTACTTTCTCCCAACACCTGAACGCCCTCG
TCAGGAAATCTTTTACACTTGGCCTCCTCAACGATCGTGAACTCCTGGAC
CAACTCCAGTTTCGTGGAGACGATATGGTTGAACAAGGAGGACACCCAGC
CGCCGTTTTGCGCGTCTTCTCCGAGATGCTTCCGAACAAACGTCATGTCT
CGCGGGAGACCACCTTTCGGGACCGCGGAAAACTCCGCGACATCAACAAG
CTCCACAGCGCGTCAACCGCAGTGTCCGGAGCAGCGCACGGATATCCTGG
CCCGTCCCATTTAGCCGCTCACCACGCTGCACGTGTGGCGGCGTCGTCCA
CCGCTCCACAGCCGCGGAGTAGGGGTTCGAGCGTTCGCGGTGGGGGAGGC
CGCTACTCTTCTGCAGGGACTTCGGTCCCTCTGCCGTTTACTCCGTCTGT
TTTGCCGCCTACCGCCACGGCCCGACGCCCTGCCCATCAAGGAGGCTCTG
CACGCGGTAACGGGCGGGGTGCATCCGCTCCACCCCCGCCCCCTTCCAAC
GCTGCGGCCGCCGACCGGAAAAGGTACACAGACAAACTCCGGGAGAACCA
GCAGGCCATGACTTCTTCGCCCAACGCCGACCGCTGCCACAACTGCGCCG
ATAAGGGCCGCGTAGACCTCCACCACCACAAAGCGTGTGCTTTCTCCCTG
TGCCGCCGCTGCAAACGCGGAGGGCACCGCGCGGTGGACTGCACCTTTCC
CCCTTACCGCGGTTGACCTTGTTGATATAGGATCTTTGGACGGCCATTCC
GGGTGCTGACACTTGCCCGAGCTGAGCGCGTCGTTTGAGAGGGGGTAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig77:480216..481063+

>mRNA_P-littoralis_Contig77.117.1 ID=mRNA_P-littoralis_Contig77.117.1|Name=mRNA_P-littoralis_Contig77.117.1|organism=Pylaiella littoralis U1_48|type=CDS|length=642bp|location=Sequence derived from alignment at P-littoralis_Contig77:480216..481063+ (Pylaiella littoralis U1_48)
ATGGTTGAACAAGGAGGACACCCAGCCGCCGTTTTGCGCGTCTTCTCCGA
GATGCTTCCGAACAAACGTCATGTCTCGCGGGAGACCACCTTTCGGGACC
GCGGAAAACTCCGCGACATCAACAAGCTCCACAGCGCGTCAACCGCAGTG
TCCGGAGCAGCGCACGGATATCCTGGCCCGTCCCATTTAGCCGCTCACCA
CGCTGCACGTGTGGCGGCGTCGTCCACCGCTCCACAGCCGCGGAGTAGGG
GTTCGAGCGTTCGCGGTGGGGGAGGCCGCTACTCTTCTGCAGGGACTTCG
GTCCCTCTGCCGTTTACTCCGTCTGTTTTGCCGCCTACCGCCACGGCCCG
ACGCCCTGCCCATCAAGGAGGCTCTGCACGCGGTAACGGGCGGGGTGCAT
CCGCTCCACCCCCGCCCCCTTCCAACGCTGCGGCCGCCGACCGGAAAAGG
TACACAGACAAACTCCGGGAGAACCAGCAGGCCATGACTTCTTCGCCCAA
CGCCGACCGCTGCCACAACTGCGCCGATAAGGGCCGCGTAGACCTCCACC
ACCACAAAGCGTGTGCTTTCTCCCTGTGCCGCCGCTGCAAACGCGGAGGG
CACCGCGCGGTGGACTGCACCTTTCCCCCTTACCGCGGTTGA
back to top