mRNA_P-littoralis_Contig77.87.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig77.87.1
Unique NamemRNA_P-littoralis_Contig77.87.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:298810..300767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog511051.CSE_04280
Preferred namegcvH
PFAMsGCV_H
Model size1629
Max annot lvl2|Bacteria
KEGG rclassRC00022,RC02834
KEGG koko:K02437
KEGG ReactionR01221
KEGG Pathwayko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200
KEGG ModuleM00532
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue7.29e-06
EggNOG OGsCOG0509@1|root,COG0509@2|Bacteria
Ec32 ortholog descriptionGlycine cleavage system H-protein
Ec32 orthologEc-01_011490.1
Descriptionglycine decarboxylation via glycine cleavage system
Cds size159
COG categoryE
BRITEko00000,ko00001,ko00002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791590.2833428-UTR-P-littoralis_Contig77:298809..2995731680791590.2833428-UTR-P-littoralis_Contig77:298809..299573Pylaiella littoralis U1_48UTRP-littoralis_Contig77 298810..299573 -
1680791590.3182573-UTR-P-littoralis_Contig77:300061..3007671680791590.3182573-UTR-P-littoralis_Contig77:300061..300767Pylaiella littoralis U1_48UTRP-littoralis_Contig77 300062..300767 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791590.2982194-CDS-P-littoralis_Contig77:299573..2996661680791590.2982194-CDS-P-littoralis_Contig77:299573..299666Pylaiella littoralis U1_48CDSP-littoralis_Contig77 299574..299666 -
1680791590.3073115-CDS-P-littoralis_Contig77:299995..3000611680791590.3073115-CDS-P-littoralis_Contig77:299995..300061Pylaiella littoralis U1_48CDSP-littoralis_Contig77 299996..300061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.87.1prot_P-littoralis_Contig77.87.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig77 299574..300061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig77.87.1

>prot_P-littoralis_Contig77.87.1 ID=prot_P-littoralis_Contig77.87.1|Name=mRNA_P-littoralis_Contig77.87.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
MFGELIQANKALLENPGLMSEDPLGLGWLAIVRLKPRDLRHLQQALGVVE
ER*
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mRNA from alignment at P-littoralis_Contig77:298810..300767-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig77.87.1 ID=mRNA_P-littoralis_Contig77.87.1|Name=mRNA_P-littoralis_Contig77.87.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1958bp|location=Sequence derived from alignment at P-littoralis_Contig77:298810..300767- (Pylaiella littoralis U1_48)
TTTGCCTGTTCAAAAGCCAACAGCAATGCTGGAAATCTGTTGGAATGCTA
CGCGACTGGTATTGTAGTTTGATTCAGACAGGGTGCGCGTCCATACTGCT
GTATTGCGTCATTTCCAGCACTGCCCTTCTGCGGGTCTACCGTTGGCAGT
CGTCGAGGATACCACCTTTTCTATTTGCAGTACAGAACGGTGCACTAAAG
TGGCACGAACTTTACGCCACACGTCAGTCCTCTTCGCAGACGCTTTCCGC
TTCTTCCGCCCGCCCTATTTGATCATGTCGGTTCAGTGCCATCGTAACCG
CGGACTTCGATGCGGGAGGGTGTAACGTGCTCGAGTCTGCGACGGTCAAG
GGGAAAAAAAAAAGGGGGGCCCTCCAACTCCACCCGGCCACGGTTTTGTG
CAGCGTCATGACAAAGGGTAGGAACCAATACAAGGTGCGTTTACCCACCA
TAGTTGGCAGAGGAGCGTGCGTTTCCTGGTTGTCCGCCAGAGGTGAAACT
GAAGCACGGCATCGTCGTGCTTCTTTTTCGCGACACGTACGGACAATAAA
CAGCATTGTAGATCGACGCGAAGCCTTGTTCCAAACCCTTGCTTGCTGCA
CGCACTGCTCGTTCGTCGCTCCGTGGCGGCGTTGAATCGGTGTTGCCCTG
CTCCTCTACATTACTGAATGAATATTCGAATTTGAACCGCCAAGGTTTGC
ACGGGGATGTTTGGTGAGCTGATTCAAGCGAACAAGGCCCTCCTGGAAAA
CCCCGGGCTGATGAGCGAAGATGTGAGGCTGCTGACTACTGTGTTTGATA
GATGATTTTGCGCTGCTAGCCCCTTTCGGCTTGATACACGAGGAACTTGT
CGGTGAAAATGACCGTTGTAAACTGGCGATCGATTTATGTCCAATTTTTA
TTTGGTCCCTGTCGTGATGACAAAGTATAGCTAAACTGCTGCCTCGGCAG
AACTCTCATGAAACGAGTTCTTGGTCGAGTTTCGTACCGCACTTGAGAAC
GTACATGGTGACGGTCCGACGACCATCTGGTCGAATAGCGCCACACAGCT
GACGTCACCCTACCCTGCCCGTGTTTGCATGCCACTGTGTTGATGTGCCA
GCCGTTAGGCCTGGGGTGGTTAGCGATAGTCAGACTCAAACCGCGGGACC
TGCGGCATCTACAGCAAGCGTTGGGGGTCGTAGAAGAGCGATAGCCTTGG
CACCATTTTCCAAGACAGAAGAAGCGAGGGTGGCGGACACTCGTTGGTCT
CGTCAGGACCTTGTCTCGTTGCTGTTGGCGGGGTCGTAACACAAGCACCT
CGTTTTTGAAGAATGCGTCGTGCATCAGGCTCTGGCCAGGCGGGAGGAGG
TGTACACTCGGTTGCTGCTACCGATCAAGTTCGGGTAGTGCGAGGAGCTT
TTGATGAACGCCGAACAGCTTCCGTTTTGCTAGCAAGACTTTACCACGCG
GCGTGTACGAATAGTGGGTGGTTTTATGGACACTCAGTCGGAAATTAGGC
TCCGTGTTGAGCTATTGTGTAGCTTGGTGTGACCGTGAGGGCTGCTGCTT
GCAATCGACTTGGACAAAACAAGTGGTCCGCCGTAATCGTAACAAGAGCT
GCTGCTTGTTTGGTGCTCCTTGTTCCTCGTAACCCACGTATCCTATCATA
TGCTCTTTACTTTATGGTCCTCAAGGGCGAACATAATTTCCCCACACCAA
GGAAACCCATCTACTGCTGTTCGGGTATTTTGTCACGTAATTCTGCACAG
TACAAAACCAAGTCCTCAAATGGACGAACTTTACAGCAGTGTACCCGAGC
TACTATTTGTATGGACTAGCGCACCTCTACACGCACTGTTGTCAAATAAC
TCGACTACAAAGAGGGTTGCGTAACCGCCCATTAATGCCCGCGTAAGGCA
CGCGCGTTTTAAAAATTGTACAGGTTGGTTTACATAAATCTCATGGTTTG
CTTTTCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig77:298810..300767-

>mRNA_P-littoralis_Contig77.87.1 ID=mRNA_P-littoralis_Contig77.87.1|Name=mRNA_P-littoralis_Contig77.87.1|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig77:298810..300767- (Pylaiella littoralis U1_48)
ATGTTTGGTGAGCTGATTCAAGCGAACAAGGCCCTCCTGGAAAACCCCGG
GCTGATGAGCGAAGATCCGTTAGGCCTGGGGTGGTTAGCGATAGTCAGAC
TCAAACCGCGGGACCTGCGGCATCTACAGCAAGCGTTGGGGGTCGTAGAA
GAGCGATAG
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