mRNA_P-littoralis_Contig77.65.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig77.65.2
Unique NamemRNA_P-littoralis_Contig77.65.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig77.65.2 vs. uniprot
Match: D7G702_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G702_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 4.650e-72
Identity = 194/389 (49.87%), Postives = 217/389 (55.78%), Query Frame = 2 
Query:  287 MFDMIASKIGEAQAFADGVASLDFVNMDRLLEEQEREEQSKDESLRLLRTSGDTTDAASSQDSSRMGAVAAAGRVVERANKSRRNDDALREIEMPQVLAAA-AELEQIQHGSHQPSPNGGASE-SSFRDRFASIEDGGVNFEDEFDPILASIRKPXXXXXXXXXXXXXXAISTATTAPAGGVGERKQDSFF-----PSP-----ENDTAGRPTAGSTFAAGFLSMLPGDMRAKAGEVMAQSSARISESANAIRSALDSGGAAPPAADK--RRQSDPAYRG---GFSELEEGKGGISGGRRAAGGEGDEGEVQLLNVNDLFSEEEKQQLSSXXXXXXXXXXXXXXXXXXKYVPVAVVIGLLGLFYLWRWTSLIVGGG-ANGVASLGPERM 1399
            MFDM+ASKIGEAQAFADG+ +LD +NMDRLLEEQER        LRL                                           +IE+PQ+     AEL      SH PSP G  SE SSF DRFAS+EDGGVNFEDEFDPILASIRKP                  +TTA A  +  R +         PS      E + AGRPT GS+ AAGFLSMLPGDMRAKAGEVMAQSSARISESANA RSAL  GGAA  A DK  RRQSD   RG   G  ELEEG+             GDE +V+L+NVN++ SEEE+QQL+S                  KYVPV V IGLLGL YLWRWT+L+VG   AN V  LG ERM
Sbjct:    1 MFDMLASKIGEAQAFADGLVNLDVINMDRLLEEQERXXXXXXXXLRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDIEIPQLRQEDNAELR-----SH-PSPRGSTSEHSSFGDRFASMEDGGVNFEDEFDPILASIRKPQQPP-------------ASTTAAASSMSPRGRXXXXXXXXXPSGRERGREANDAGRPTTGSSLAAGFLSMLPGDMRAKAGEVMAQSSARISESANAFRSALGPGGAAQSATDKSKRRQSDHTCRGVDGGDHELEEGR-------------GDEDDVRLMNVNEVLSEEERQQLASFAGGAGAGRFCGWRRLR-KYVPVFVGIGLLGLLYLWRWTTLLVGKDTANEVKVLGSERM 356
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.65.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G702_ECTSI4.650e-7249.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:231396..237498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2129
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_011590.1
Cds size1116
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.65.2prot_P-littoralis_Contig77.65.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig77 231682..236771 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791589.1016123-UTR-P-littoralis_Contig77:231395..2316811680791589.1016123-UTR-P-littoralis_Contig77:231395..231681Pylaiella littoralis U1_48UTRP-littoralis_Contig77 231396..231681 +
1680791589.172764-UTR-P-littoralis_Contig77:236771..2374981680791589.172764-UTR-P-littoralis_Contig77:236771..237498Pylaiella littoralis U1_48UTRP-littoralis_Contig77 236772..237498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791589.116078-CDS-P-littoralis_Contig77:231681..2317671680791589.116078-CDS-P-littoralis_Contig77:231681..231767Pylaiella littoralis U1_48CDSP-littoralis_Contig77 231682..231767 +
1680791589.1313965-CDS-P-littoralis_Contig77:232577..2334121680791589.1313965-CDS-P-littoralis_Contig77:232577..233412Pylaiella littoralis U1_48CDSP-littoralis_Contig77 232578..233412 +
1680791589.140983-CDS-P-littoralis_Contig77:236227..2363211680791589.140983-CDS-P-littoralis_Contig77:236227..236321Pylaiella littoralis U1_48CDSP-littoralis_Contig77 236228..236321 +
1680791589.1604176-CDS-P-littoralis_Contig77:236670..2367711680791589.1604176-CDS-P-littoralis_Contig77:236670..236771Pylaiella littoralis U1_48CDSP-littoralis_Contig77 236671..236771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig77.65.2

>prot_P-littoralis_Contig77.65.2 ID=prot_P-littoralis_Contig77.65.2|Name=mRNA_P-littoralis_Contig77.65.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=372bp
MFDMIASKIGEAQAFADGVASLDFVNMDRLLEEQEREEQSKDESLRLLRT
SGDTTDAASSQDSSRMGAVAAAGRVVERANKSRRNDDALREIEMPQVLAA
AAELEQIQHGSHQPSPNGGASESSFRDRFASIEDGGVNFEDEFDPILASI
RKPPQQQQQQQQQQQQPAISTATTAPAGGVGERKQDSFFPSPENDTAGRP
TAGSTFAAGFLSMLPGDMRAKAGEVMAQSSARISESANAIRSALDSGGAA
PPAADKRRQSDPAYRGGFSELEEGKGGISGGRRAAGGEGDEGEVQLLNVN
DLFSEEEKQQLSSLSGVSGGAGRFCRWRRLRKYVPVAVVIGLLGLFYLWR
WTSLIVGGGANGVASLGPERM*
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mRNA from alignment at P-littoralis_Contig77:231396..237498+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig77.65.2 ID=mRNA_P-littoralis_Contig77.65.2|Name=mRNA_P-littoralis_Contig77.65.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6103bp|location=Sequence derived from alignment at P-littoralis_Contig77:231396..237498+ (Pylaiella littoralis U1_48)
TGGGTTGCACGCTGTACGCCGATTCTGAGCCCGTTCTCCCCCTTCTCTGA
TGAGGACTTCAAGGCCTAGAGAGGCGCTATTGACTATCGACACACGGTAA
CCAGTCGTTGTCACCCGGCCACTTGAGTTGTTTGGGTTACCTAACATCTT
CTCTCCTGTAGTTCGGTTCGACGGCGCAATTAACTACTCACGAGTTTAAA
AAAACAGCCCAACCCACGAGCGGCAGCACTCGGCGTGTATAGTCACCAAC
CGCGTTTGCCCTTGGGTGGGGGACCAGTAGTAAAACATGTTCGACATGAT
CGCGTCCAAGATTGGGGAGGCCCAAGCTTTCGCGGATGGCGTGGCGAGCC
TGGACTTCGTGAACATGGATAGGTGTGTGACACTCATGACCCCCTGGTCG
ATTAGCACCTGATATCCTATGTAGACAGGACGGACGATTCGCCTCAGCTA
GACGGGACTACCGTACGTGCCTAGAGCGCAGTCAGTTTCAGCAATTCGCT
GATCTGCTTCTGGCTGTTTATGTGCCGTAGTATCATACAAGTAATGCTGC
TTTTGTGCCTGCCCAACCATTGGGAATGTCATGGGCCGGTAAATATAGCC
TCCATCGATTTCGTTGCGGTGTGAATAAAAAACGAAAAAACACCGCATCT
CCGACACGGCCCTCCGCACCTCCGCACTTCGCACCTTTTTTCCATCTCCA
TCTCCATCTCCATCTCCATCTCTATATCTGCCATCTACTGGCGTCAAGAA
CCATCTCTTGTGTCCCTCGTGGCGGGATGACGGTACCTACGGCGGATGCC
CATGGCTGTAACAACTCTTGTCACGGCTGCTTCACTCCCTCGATAGCTAC
AATTTCAGCACAGAGTATTTTCCTCCTAGCACGGTATGTGCCTGGTTTGT
GACCACGGGCTAGACTGCGGCGGTAGTGAGCTAATGTGAGAACCAACAAC
AACAACAACAACAACACACAGGATGCCGGGCCGCCTGTCCGTACTTTACT
ACACTTCCTCTATTATTGTTGTCTTCCCTCTTTTTTTCGCGTGGGCCTGA
CTCCTGGCTCAACGTTTCAAGGTTTCCTTTGTGTCTTCGCCCAAACATTC
TTTTGCGAATCCCACGACGCCTCTACCACTGCCCTATCGCCCTTTGCGTC
ATCACATCACTCGTGCCGCACATATCAAACAGACTTCTTGAAGAGCAGGA
AAGGGAAGAACAGTCCAAAGACGAATCCCTCCGACTACTGAGAACATCCG
GCGACACCACAGACGCTGCCTCCTCCCAGGACTCGTCAAGAATGGGCGCG
GTGGCAGCTGCGGGGAGGGTGGTAGAGAGGGCCAACAAAAGCCGTAGGAA
CGACGATGCTCTCCGTGAAATCGAGATGCCGCAAGTCCTCGCAGCAGCCG
CAGAGCTGGAACAAATACAGCACGGGAGTCACCAGCCTTCGCCGAATGGG
GGTGCGAGCGAGAGCAGCTTCAGGGATAGATTCGCGTCGATCGAGGATGG
CGGGGTAAACTTCGAGGACGAATTCGACCCCATCCTGGCATCGATACGGA
AACCTCCACAGCAACAACAACAACAACAACAACAACAACAACAGCCAGCT
ATCTCAACGGCAACAACAGCACCCGCCGGCGGTGTCGGAGAGCGAAAACA
GGATTCTTTTTTTCCTAGCCCCGAAAACGACACGGCCGGCAGGCCTACTG
CCGGGTCCACTTTCGCGGCAGGTTTTCTGTCCATGCTTCCAGGGGACATG
CGCGCCAAAGCCGGGGAAGTTATGGCGCAGTCGTCCGCGCGTATCTCCGA
ATCGGCGAACGCGATTCGATCGGCGTTAGATTCCGGAGGCGCGGCGCCTC
CCGCAGCGGACAAGAGAAGACAGTCCGACCCAGCGTATCGCGGTGGTTTT
TCTGAGCTGGAGGAGGGCAAAGGCGGTATAAGTGGGGGCAGGCGTGCGGC
GGGAGGGGAAGGGGATGAGGGCGAGGTGCAACTTTTGAACGTGAACGACC
TGTTCAGCGAAGAGGAGGTGAGGATAACGGGGTCTGCCTACGTTCGGGAC
GGTGTCCGTTTGTCTGCCTTCCTGACTGTCTGTCTGTCTGTCTGTCTAGT
GTGTAGCTGATCGCTATCGAAAAAACCCACCAATATACTTCGTACTTTGA
AGTACCAAATAACGAGGGAACACCTACCTGAGGCAGTACTCCGTGGGATG
TGTTGAATTCCCCACAGAAGAGGGTTCACTGCAAATAGTCGGCCGGCAGG
GACCTATCTTTTTTACGCACGCAAGCTTGATTTGCACGAGGCGTTTAGTT
GCTTTCAACCAGAAACAGGCAATAAAATGACTTTAAAACTATTAAAAATT
ATGATTGTATGATGAAAGGTTTCGGCGGCTTACGCCGCCACACTCAGTGA
GCGGCTCCAGGTGCTTGGTTAGCTTGTTGGTTATCCGTAGTGGGTCACTT
GTGTTCGTCTATGCCGCGAAAAACTTGTGTTCTGCGCATGTTGTTGTGGA
GAGAGTCGTATAAACGATTTAGACTCGACGCACCATCCCTACAATCAAAG
AATAGTACAACGCTTCTCCAGCGTGGAAGGTATAACACACGGTGGCGGCA
CGCGAACGAACCAACACTTGAGAAGACTGAAGAGCATTCCACCGTACGTA
TTGAAAAAGCATTCAACTGGATTCAAAAGCAGGACAGGAAAGGCCCCAAT
CTTATATCCACAAATTTTTATTACAGACACAAAAACCATTCTACTAGGCC
GAAAGTAATCAGGTGAACCCCATTACGTGACATCGGACCACACAACATTG
ATAAGCACCACACGTTGTTAATGCAAAGAATGCCGAGCGAAACCCGACGA
TAGCCAAAAACACCGAAGGAATAACTCTGCTGAGAAGTTGGAAAGGACAA
GGCCGCTAAGGCGAGTCACGCACTCCTTCCAGTATAGGTGATTTGAGTGG
GACTTGCTTGCCCCTTAGCCTCATTCTATCCACCAATTAGTTTGTTGGTC
GGGATGAAGAGGAGGGTCTCCGTCGACCCTTTGTGCCGTGCGTATGTGAG
GCAGTCCCTGGTGGATTGAAAGGCATGCATCCGATGAGATCTCAACATGT
TGTCGCGACAGCAGGGGAAAGTCGATGTTGTTAATCGGTCGCAGCGTGAA
TAAAAGCGGGGAAGGTGACATCGGCAACAAAACATATGTACTTCTGTTCA
AGTCGCCAAATAAGCGCGAGGGTCAAGTGAGGCAATTCATGGCGGATCGG
CTTTCGTGCACGTCTGAGGGCAACGTAAAGTTGGCCATGCGTGAAAACGT
TCGACCGCAACCTGTGTCTTGTGTTGAACAGCAGTGTTTGCCCTTCGCTT
TTGCTCGTGGAGGCGTAGCAAACATGTTCCTTGCCGCCAGAAGTGGAGTG
GTTTCCGAACAGAGAAGTGCGAGTGTGGCTGTCGAGGGATCGCCCGTGCG
ACATTTCCGGCGCTTTTTTTTTGTCTTTGTTTTTTGCGAGCAAAGAGCCG
CTCTCGTGCACTGCTGTGAGCGGCGAGAATATCATCAGTAGAATTAAAAC
AAAATAAACGAGCACAGCGAAACAAAGTTTTCAAAGTTTTCGCTCCGAGC
CGGGAGCGTCCGCCAGGAACAATAATATTCCGAGCAAGGAGCCGAGCAAG
TTACTCAATGTCAGCACGACGCGGGTGCATGAGAAGCGGCAGCAAGCGCA
GGCAGGAAGCAACGTGTACGCACGTGCGTGCCCTTCAGAGAGCACCACTG
TTACTGCTGTGAGAGGTCTCAGCGAGGGTCCAGAGCCGAATGAGAGTGCG
CGTAGATGTGCGCGTTTGCGAGAGACACGCTTTTCGATTGCTCGTGCTGC
GGTGCGCTGTGAGCACAGCAGAAAAATGGACCGTTTAATCAAGTAATTCG
GAAATGAAAAACCCATTTAGGGCCTCGAGAGTGCTCGCCGGAAATCTGGC
TGCTTCACGCTCACGAAAATGATTAACGATATATCTGTGAATAACGGTAA
TAAAATAGTAGTAATATTTATGATAAAAATCCATAAAAATATTAATGCTA
AGTTTGTGTTGCGATTTTGGCGTTGGGTATGCACATAGAGCCACGCTCTT
GACCCAAATGGGTGCTGTGGTCGACTCCAGATATACCTTGCTCACCCTGT
ATTTGTGTGATTGAATATTATTCTCGAGTAAGTCAGAGCGAACTCTATTT
TACTTCGCCTCGCTGGAAAGAGAACCGGTCAACAAGGGAGCGATCCAAAG
TTCTTCGAGGTAGTCGTTGCGGCGAAGGAAGGCGCTGTGCTCTTCGAACA
ATACTTCGTAGTACGCTGTGTCCGAGAGTCGGGTTTGATGCGAACATTGA
CGTCTGCTCGAATTGACTCGCGTATTTTCTTTGGGTGCCGGCCGGCCACA
TGGCCAAACTAATTCCACCAAAGTGAAATCAAGCGACGTTGGAGGGTGAA
CGAGTGACGGCGCACTAATTTGATTCTCGTGCGCGATGATGTTTCACCAG
AATTGGATGCTTACGGGGCGAGAAAGTATCCACCCGTCGTCGCACTTGGA
TATAGATATTATATCATACGTTGTACCTGTGTGCCATGTGGAAGCACGAA
GGTGGCATTCCCCCCCCTCACTCAAACTACGTCACTCTCTCGTCTCTCCG
TCGTGGCGTGTCTTGTTTCACGGCTATGGCTGCTCGCTCCTTCCTGATGC
TGTCTCATCCGCGCGCTCACAGCGGCGTAACATCTCTGCTGAACCGAACT
CTCCGCCGCCCCGTGTTGCAATCTGCTTTGTCCACTCCTCCCCCCCCCCC
CCTTTCCCTTTCACGTTTCGTTCGGGACACAGAAACAACAACTGTCATCA
TTGTCAGGGGTGTCAGGCGGGGCAGGGAGGTTTTGTCGATGGAGAAGACT
CCGGAAATACGTTCCCGTCGCCGTGGGTGAGTTATTTCATTTCGTTTCCT
ACTTGTTGTACTGGTGAAACTGCGGGGGGCCCTGCAGAAAGCGCTCGAGG
GGTCCTTGGTTCCGGCCGGCATAACCATGATCTGCAGCAGCTGGACTTCA
AAGCATTCACGGGACCCCGTCCTAGGTGGCGATCTTCTCTTGATGTTGAT
TGTTTTCTCTTTTAAAAACACTAGGGTGAAGTTGTTCTTAGACAAGAAAG
TACTTCGTGTGTAGCTCTACCGACAAGGCGATAGCCGTGCGTGCTTCACT
ATATACTCGTACAAAACTCGTGACATGATATCCCCAAGTTTCCCCCCTCT
CGTCCATCGGTGCGTCCCACTGCAGTTATTGGGCTGCTGGGCTTGTTTTA
CCTCTGGCGATGGACGAGCTTGATCGTGGGTGGTGGCGCAAACGGAGTTG
CGTCGTTAGGCCCTGAGAGGATGTGACAATGGCTCATCGATGAGTGGGAG
GGTGCGAAAGTACCCGGGCATTCCTTGTTGGTGCTCGTTTTTCGGGGGGC
TTTCGAGTTGGGGCACGCAAAGTTGTGATTTTCTCCGGTGGGTTGTGTTG
TTCCGTGTACATTCGTGGACAGGTGCAGGCGGTATTACGCCGTGCATGGC
GACATTTGGTGCTGTTCGGGGTTTGTCTTCCCCGTTTTCGTGAGATTTTG
TTGCAGGCTGAGCGGATTGTGTGCTACCTGCTGTTCAACTGCTCGCCCTG
GGATACGTGGAGCGACCTAGTTGGTCGCCGGTGTCCACGGTCTAAATTGC
AACCTCGGAGGTTGTGGGTGATTAGGTCGTGAGTTTGAGCGTCAGCACCT
ATTTACCTGGCAGCATGTTCTGTTCTTATGCGCAGTAGTCAAAATAAATA
AATTTTGTTTTATTCATGGGAGGGATTAGGACTCGTAAACCCTTGCCGCG
ATTCAATTGAAGGCAGACTGCTGTACCGCAGGAGGGAGATGCGGTCGCTC
AGGCAGAGGATTTCCAACGCGTGATCCCCGCGATACGCCAGACACAGAGA
CTCTCGCAGTGTACGGACGAGGCGCCACCGAAAGAGAAAGAGACCAGAGT
TGGTGCCAACCATCATAGAGGAGTGATGGTGAAAAAATGTCAAGACATGT
TCTTCCCTAAACGTCAAAAGTAATTATCAAAGTTATCATTTAAAACAAAC
GGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig77:231396..237498+

>mRNA_P-littoralis_Contig77.65.2 ID=mRNA_P-littoralis_Contig77.65.2|Name=mRNA_P-littoralis_Contig77.65.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1116bp|location=Sequence derived from alignment at P-littoralis_Contig77:231396..237498+ (Pylaiella littoralis U1_48)
ATGTTCGACATGATCGCGTCCAAGATTGGGGAGGCCCAAGCTTTCGCGGA
TGGCGTGGCGAGCCTGGACTTCGTGAACATGGATAGACTTCTTGAAGAGC
AGGAAAGGGAAGAACAGTCCAAAGACGAATCCCTCCGACTACTGAGAACA
TCCGGCGACACCACAGACGCTGCCTCCTCCCAGGACTCGTCAAGAATGGG
CGCGGTGGCAGCTGCGGGGAGGGTGGTAGAGAGGGCCAACAAAAGCCGTA
GGAACGACGATGCTCTCCGTGAAATCGAGATGCCGCAAGTCCTCGCAGCA
GCCGCAGAGCTGGAACAAATACAGCACGGGAGTCACCAGCCTTCGCCGAA
TGGGGGTGCGAGCGAGAGCAGCTTCAGGGATAGATTCGCGTCGATCGAGG
ATGGCGGGGTAAACTTCGAGGACGAATTCGACCCCATCCTGGCATCGATA
CGGAAACCTCCACAGCAACAACAACAACAACAACAACAACAACAACAGCC
AGCTATCTCAACGGCAACAACAGCACCCGCCGGCGGTGTCGGAGAGCGAA
AACAGGATTCTTTTTTTCCTAGCCCCGAAAACGACACGGCCGGCAGGCCT
ACTGCCGGGTCCACTTTCGCGGCAGGTTTTCTGTCCATGCTTCCAGGGGA
CATGCGCGCCAAAGCCGGGGAAGTTATGGCGCAGTCGTCCGCGCGTATCT
CCGAATCGGCGAACGCGATTCGATCGGCGTTAGATTCCGGAGGCGCGGCG
CCTCCCGCAGCGGACAAGAGAAGACAGTCCGACCCAGCGTATCGCGGTGG
TTTTTCTGAGCTGGAGGAGGGCAAAGGCGGTATAAGTGGGGGCAGGCGTG
CGGCGGGAGGGGAAGGGGATGAGGGCGAGGTGCAACTTTTGAACGTGAAC
GACCTGTTCAGCGAAGAGGAGAAACAACAACTGTCATCATTGTCAGGGGT
GTCAGGCGGGGCAGGGAGGTTTTGTCGATGGAGAAGACTCCGGAAATACG
TTCCCGTCGCCGTGGTTATTGGGCTGCTGGGCTTGTTTTACCTCTGGCGA
TGGACGAGCTTGATCGTGGGTGGTGGCGCAAACGGAGTTGCGTCGTTAGG
CCCTGAGAGGATGTGA
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