mRNA_P-littoralis_Contig77.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig77.34.1
Unique NamemRNA_P-littoralis_Contig77.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig77.34.1 vs. uniprot
Match: D7G6Y5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Y5_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.600e-35
Identity = 87/116 (75.00%), Postives = 95/116 (81.90%), Query Frame = 2 
Query:   92 MVRTVFVSVVALAASANAFLAPVPGYSLARTSRASGALQMVTS--PGVSTAAVTSAPGEG---SSEATYTAALKKMEAESIADLEKAFDETAKKAKAESDKIWANLEEEFAADDDK 424
            MVRT FVSVVAL+ASANAFLAPVPGYSLARTSRAS  +QMVTS  P VST       GEG   S+E TYTAALKKMEAES+A+LEKAF+ETAKKAKAESDKIW +LE EFA D D+
Sbjct:    1 MVRTAFVSVVALSASANAFLAPVPGYSLARTSRASAPIQMVTSATPAVST-------GEGKMVSNEETYTAALKKMEAESLAELEKAFEETAKKAKAESDKIWGDLEAEFAQDVDE 109
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6Y5_ECTSI1.600e-3575.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:100075..104495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1392
Hectar predicted targeting categorychloroplast
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_011760.1
Cds size342
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.34.1prot_P-littoralis_Contig77.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig77 101654..102710 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791586.8460782-UTR-P-littoralis_Contig77:100074..1007571680791586.8460782-UTR-P-littoralis_Contig77:100074..100757Pylaiella littoralis U1_48UTRP-littoralis_Contig77 100075..100757 -
1680791586.857255-UTR-P-littoralis_Contig77:101377..1016531680791586.857255-UTR-P-littoralis_Contig77:101377..101653Pylaiella littoralis U1_48UTRP-littoralis_Contig77 101378..101653 -
1680791586.9006333-UTR-P-littoralis_Contig77:102710..1027511680791586.9006333-UTR-P-littoralis_Contig77:102710..102751Pylaiella littoralis U1_48UTRP-littoralis_Contig77 102711..102751 -
1680791586.9187849-UTR-P-littoralis_Contig77:104445..1044951680791586.9187849-UTR-P-littoralis_Contig77:104445..104495Pylaiella littoralis U1_48UTRP-littoralis_Contig77 104446..104495 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791586.8688724-CDS-P-littoralis_Contig77:101653..1018891680791586.8688724-CDS-P-littoralis_Contig77:101653..101889Pylaiella littoralis U1_48CDSP-littoralis_Contig77 101654..101889 -
1680791586.8827107-CDS-P-littoralis_Contig77:102604..1027101680791586.8827107-CDS-P-littoralis_Contig77:102604..102710Pylaiella littoralis U1_48CDSP-littoralis_Contig77 102605..102710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig77.34.1

>prot_P-littoralis_Contig77.34.1 ID=prot_P-littoralis_Contig77.34.1|Name=mRNA_P-littoralis_Contig77.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
MVRTVFVSVVALAASANAFLAPVPGYSLARTSRASGALQMVTSPGVSTAA
VTSAPGEGSSEATYTAALKKMEAESIADLEKAFDETAKKAKAESDKIWAN
LEEEFAADDDKEA*
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mRNA from alignment at P-littoralis_Contig77:100075..104495-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig77.34.1 ID=mRNA_P-littoralis_Contig77.34.1|Name=mRNA_P-littoralis_Contig77.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4421bp|location=Sequence derived from alignment at P-littoralis_Contig77:100075..104495- (Pylaiella littoralis U1_48)
GGCCACCCACGTGTTCTGTGACCTCCCAAGCTCGAACGGACATATCCAAG
GTAAGCGGTGCCAAGGGTATTGGGAATGGGGAGGGATAACTCTCGCATGC
GTTCCCTTTCCTTCCTCGATGGCTGTGTAGCATGTGTACCCAGAATGTTC
GAGGTGAGGTTTTTGAGTGACGTTTTGTCGGCAGATTCACCGGTGGAGCT
ATGAAACGTGGGACGTGCACCTACGTTCGTGTCTGGAGCTAGTCGAGGCT
TGGGCGGAGCCAGGAGCCCGATCGGAGGAGCGAGGATCTTCTACGTCCGG
GCTTACCATCGGGGGGAATGTGGGGGGGCATTCAGCCGTTCCGGCGTGAA
CCTGTTGCATGAACAACGGGTGGTTTTTCGATCTTGATTCGCCGCGAACC
ACGTCGCGAGAGGTCATTTCTGCGAGGCACGCACCAGCGGAGGAGAGCCG
GATGCCAGCCCTCAGGAGATTGGCTTGCACATACTTCGAGTCTGCAGTAC
CCCGTGTTTACACGTCAGATGCCAACGCTAGTTTGTCCTGGACGTTCTTG
GCGGAGCTGTTGTTTTGAGAGTAGTACGAGTATCATACCTCATGACGACC
CCCAGCTTAGACGTTCAACCAAATTTTTCATCATAACCTTTTTATTCAGT
TCGCCCGCCCATGCCTTTCAGCAAACACCCTTCCTCCTTGAGACGTGTGA
TGATTCGGAGATTCATTTGGTGGCGGTCGTCGCAGCCGTCTTCCCTCCTA
CACAGAGCACGGCAGGTCGAGAGGGGTTACTTAGCTCCACCTCTTTCTTG
CACCACGAGTACTAGATTCGCGATCAGAATTTGGACGCCCCGAACCACCG
CACAAATCACACAGCAGTGTAGTGAGGCAAATATGTCATGTACGTGTGTG
CCCTGCCCATCGGCTAACATGTGTGCAACCCTCTGCTGGGTTTATGTGGC
TCTCTGAGTTTGTTCAACATGGTCATGTTTTACCCTGTTGCTGACCATGA
TGAGAAATCCATGTACAAATTCAATCAGCAATGCTTGCCGACGTTTTTCT
TTTGCGCCCGCGCAAGATGTGCATCAAGGGCAAACCTTCAACACATAATT
ATGCCCGACTTTGTTCGGCAAGCTCAGTCCCGCCGCCGTTTGCGTCTGTC
GTGTTCCATTTCACACTATCAAATTATACCTGGTATTAAACAAAGGCAGT
CACGATGGGGCGCATCACAATTAACAACTGCTGTGGTACTCGTACAGTAG
TACCATATTTTCCCCCGACTTTGGTATCACTGAAAAGTAAAAATACGTCC
AGCAGTACGTAACGGTGCGAACTCCAATCCCGGCGAGCCTGAGCTCCCGC
CTGCTTTCCTGTTTTTTATATGTATGTACCTCACGCAGTCCCAGGGTTTC
GCAGCACCTTCTGACTCACAACGTTGTTGGGGGGTGGCATTTCGCATGAT
ACACTCCAACAGACCGATTGACAAGTGTACTTCCATTACATGCGTACAAG
CACACACCTATTTACAGTAGTACTTGCAAATGCACGTTCGTCCGCACCCC
AAGTATGATACAAACACGATATGCCGACCAGTTGCACCTCCGAAACGGTT
TGTTTGTTTACTATGACACATACATCTGATAATGCTCATGTGCAAACCAA
AACCTTTTTGCGTTTCTGCTCGCTACCCACCCCCCACCCCCCCCTTTCCG
CCCGTTCCTCCCCTTCCCGTTGTTGTTTCCCCTCATGGCTGCAGGCGTCT
TTCTCTTCCCCTCACACGTCAACCCTCCCAGCACAATGGTTCGCACAGTA
TTTGTTTCGGTGGTGGCCCTCGCGGCGTCGGCGAACGCCTTCCTGGCGCC
TGTACCTGGATACTCCTTGGCACGGACCTCGCGCGCCTCCGGTGAGAGAA
GGGCCGAGCTGAAAGCAATTTTCATGTCGGTCCATCTACTGAGTGCGCAG
ATCGAAGTTCCCAAACACGAACGTCAGTAGCATGCGGCGTTGAGGCAATT
TTCTGTAGCTTTTGGCGTACATGTTGTTGGGAGAGAGGCCGGGGGAGGCA
CACCTTATGTTCTTCGCTGTCGTGGAGACACGTCGGTTGACCGCTGCTGT
GAAGTTGAAGTTATCGTTTCGCTCGTTGTTCGGTCAAGAGTAACGAACAC
GTAAGCGTCGCCCGTTGCCCTCGGAATCTTCATTTCGTTTATTTTTTTCT
TGTCCATCATGCCGCAGGAGACACCAGTTCCATGTCTCGTTCATCGTCGG
TCAATCTGTGAGACAGCGGTAGTCCCGGAGCCTCTTTACTCGGTGAAAAA
AAATGTATTGTACTTCGAAGTACTACTGCTGTATCATCCCATCCCCTAAG
CAGCAGCAGCGCACACGAATTTATCCCCATGGACTAGACTCTTTTACGCA
TTAGACGCACAGTGGGTCAGAACCATCTCGTACACACCTTGAATGATGAA
AGGTGTTCGGTTCGGTGGTACGAAGTATACCAGACACTTCGCATGGCACA
AAGTGCGCAGAGCTGTCCCTCCGGCGTTGTTCACGGTACATGATACTTAT
TTTTTTCAACGTCCCCGGCATGCATCTCCCACGGCGTTCCTGACGACGAT
ACGCAGGCGCGTTGCAGATGGTGACTTCGCCAGGCGTTAGCACCGCGGCC
GTTACCTCGGCGCCAGGGGAGGGCTCCAGCGAGGCCACATACACGGCGGC
CTTGAAGAAGATGGAGGCCGAATCGATCGCGGACCTGGAAAAGGCATTCG
ATGAGACGGCGAAGAAGGCCAAGGCAGAGTCCGACAAGATCTGGGCGAAC
CTCGAGGAGGAATTTGCCGCCGACGACGACAAGGAGGCGTAAGGGTAGCA
GCCAAAACCATCTCAATTGCTTTCATTCTTTTTTGTCACGAGCAACCCGC
AAGCAAATCGAGTCGCTCGGATGGGGGGAGAGGTGCCTCGCGTGCGTGTC
GTGTGTGTGTGTGTGTGTGTGTTTGCTCATGAACGATAAAAGGTCGACCT
TGGTGGTGATATTTCGATTCGATTGGATAGCTGGCTCCGGTGGTGACCCT
CATAAGCTGTATCTCCTCTTTCTTACGCGCAGTCTCTTGCACTAGCTCGA
CTCCCGCCCTCGTAGATGGCGTACTCTGTAGATTGCTACTTCGGCTCGTG
AGGTCCGCGGGTGGCGCAGGGGGGGGGTTGTCTGCATGCGCTGCCACCTG
TAGCTCGTCGTTTGCTTGTAGCAAAAGAAGGCATACGGGTGCCCCCTCCC
ACCCCCCCCCCAGCCTCCTTTCGCGTGCCCCCATCGATGCCCTCGAGTTT
CGGCACGTGTTGGTGTTGGTATGTATCGTACGTTCCTGCTTTTTAGGGGA
ATGATTAGATGGGGGTATTGATGGAGGTTTAATGAAGTCACTCAACGTGC
GGCCGTCACGGGTGGCTCAAAACAGGGGATTGGCGAAAACGCAGCCGACG
CGGTGAAGTGATGCCGCCGATCATCCTCTGGGTCTTTGGAGTGTGATGAT
CGTTTCGACGCGATTTGTGGTGGTGCCCGGTGTAACTTTTTTGCGCAGGG
GTCCGGCATGACGGGGGGGGGTTTTTTTTTTTCGTTTGTTCCTGTCGTTT
TTGGGTTTTTGCATTTTTCCATTGGGGAAACATCGCATCCGCGTGCAGCA
GACGGGATTAGTTAGATCATGAGAAGGATTCGTTGTTGGCAGGGGGCGCA
TGGTGAGGTCTAAGAAAAGATCTGTGGCGTTTGTAGAGGTTTTCGACACT
TGATTTTCGGAGAAAAGTAAGATATCACTTGGTCATCGGCACACGATAGA
ATTTGTTCGAACCGGAAAAGTTACCGATTCAATAGAGGGCGCGAATGAGA
AAGGGATGAAAGGAAGAGAGACATACGGACGTGTGCAGCTCCTGACTTCA
TGGCTCGCTACAAGTAGTTTGCAGAGAAGCTAACTCGCGAACCGGTAACG
AAAACACTTGACTGGTGGCACGCCACCCGCGGTCTGTAAACCAGAGCAAC
TCCCCCAATCGGAAGGACACGAGACCCCGGGTTTTTGAGGCCGTGGATCA
TCCAGTCAAGCTCCTAATATTTTTCCGCCGATGCTAAAGTCCAAGGTGTC
CTAACGCTGTTCCTGTTTTTTTTTCACTCATTCCACGTACGTATATATGA
TTGTGTTGTATCTTGGAAACTACACAAACGTATGTGTAATATTTCCCTGT
ACTAATCTCGTACGTGACAAAGGTCCAGGTGTACCAGGTCTTTCGTGAAA
AAAACATGAGACACCGTTGTTACTCAATTCAAACGAGGATAATCGATGTA
CACAATCCTCCCGTGACACCGGGAGGTGTAGGCTTGGCTTAGCATCCAGA
ATAGATGGGATTTAAAAAACACACGGGAAAGAGTTGGGCAGCAAAAGCGC
ACATGCCGTCCGAATTCCACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig77:100075..104495-

>mRNA_P-littoralis_Contig77.34.1 ID=mRNA_P-littoralis_Contig77.34.1|Name=mRNA_P-littoralis_Contig77.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig77:100075..104495- (Pylaiella littoralis U1_48)
ATGGTTCGCACAGTATTTGTTTCGGTGGTGGCCCTCGCGGCGTCGGCGAA
CGCCTTCCTGGCGCCTGTACCTGGATACTCCTTGGCACGGACCTCGCGCG
CCTCCGGCGCGTTGCAGATGGTGACTTCGCCAGGCGTTAGCACCGCGGCC
GTTACCTCGGCGCCAGGGGAGGGCTCCAGCGAGGCCACATACACGGCGGC
CTTGAAGAAGATGGAGGCCGAATCGATCGCGGACCTGGAAAAGGCATTCG
ATGAGACGGCGAAGAAGGCCAAGGCAGAGTCCGACAAGATCTGGGCGAAC
CTCGAGGAGGAATTTGCCGCCGACGACGACAAGGAGGCGTAA
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