mRNA_P-littoralis_Contig77.103.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig77.103.1
Unique NamemRNA_P-littoralis_Contig77.103.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig77.103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig77contigP-littoralis_Contig77:357363..358193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size832
Hectar predicted targeting categoryother localisation
Exons1
Cds size642
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791585.177877-UTR-P-littoralis_Contig77:357362..3575511680791585.177877-UTR-P-littoralis_Contig77:357362..357551Pylaiella littoralis U1_48UTRP-littoralis_Contig77 357363..357551 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791585.1881757-CDS-P-littoralis_Contig77:357551..3581931680791585.1881757-CDS-P-littoralis_Contig77:357551..358193Pylaiella littoralis U1_48CDSP-littoralis_Contig77 357552..358193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig77.103.1prot_P-littoralis_Contig77.103.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig77 357552..358193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig77.103.1

>prot_P-littoralis_Contig77.103.1 ID=prot_P-littoralis_Contig77.103.1|Name=mRNA_P-littoralis_Contig77.103.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=214bp
MGGRRFGDAAVPIKIWSPTGELAAGTCGSGHNSGIHVSPTSPWKQQGGRC
VGSSELFMCSPGDVIPRDVQQLYPLGAMYTFVDSRHDRKRMFALEWDRVA
LQDELLRQYRVWMRDASASFEWEGAWALDYKGDWRQMRGYYGTNIRTLLS
PNEQEILFQRIESENEDRPRAQPESCAMSQEDVAAMPTADEPDLTQESCV
SCAVVPELTAGDGA
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mRNA from alignment at P-littoralis_Contig77:357363..358193+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig77.103.1 ID=mRNA_P-littoralis_Contig77.103.1|Name=mRNA_P-littoralis_Contig77.103.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=831bp|location=Sequence derived from alignment at P-littoralis_Contig77:357363..358193+ (Pylaiella littoralis U1_48)
CCATTACACTAGTGTACGCGATACGATACCTGTGCGAGAGTGTAACTACA
TATCGGGATCAGCGCCTCAGCGCGCACAAGACATTCAACGACAGCAAGTA
GAACAAGAGCGATGTCAACAGGAAGTAAAAAAGCAAGTAGAAAGTAGAAG
GGTGAAGGAGAGAGATCTACGGAGAAGTGCGGAGGCACTATGGGAGGACG
AAGATTTGGCGACGCAGCGGTGCCGATCAAGATCTGGAGTCCGACGGGAG
AACTAGCGGCTGGGACATGCGGCAGCGGTCACAACTCTGGCATTCATGTG
AGTCCCACGTCACCGTGGAAGCAGCAAGGTGGGAGGTGTGTTGGGTCATC
TGAGCTCTTCATGTGTTCACCGGGTGACGTCATTCCACGTGATGTGCAGC
AACTTTATCCGTTGGGAGCAATGTACACGTTTGTCGACAGCCGTCACGAT
CGCAAACGTATGTTTGCTTTGGAGTGGGATCGAGTAGCACTCCAAGACGA
GTTGCTTCGCCAATACCGTGTTTGGATGAGAGATGCTTCTGCTTCATTCG
AATGGGAAGGTGCATGGGCACTTGACTACAAGGGCGACTGGCGCCAGATG
CGCGGGTATTATGGTACGAATATCCGAACGCTTTTGTCTCCTAACGAGCA
AGAGATTTTGTTTCAGAGGATAGAGTCGGAGAACGAAGATCGACCGCGTG
CACAGCCGGAATCGTGCGCAATGAGTCAAGAGGATGTAGCAGCGATGCCC
ACAGCGGACGAACCTGACCTGACTCAGGAAAGTTGTGTTTCGTGTGCGGT
GGTCCCGGAGCTCACGGCCGGGGACGGAGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig77:357363..358193+

>mRNA_P-littoralis_Contig77.103.1 ID=mRNA_P-littoralis_Contig77.103.1|Name=mRNA_P-littoralis_Contig77.103.1|organism=Pylaiella littoralis U1_48|type=CDS|length=642bp|location=Sequence derived from alignment at P-littoralis_Contig77:357363..358193+ (Pylaiella littoralis U1_48)
ATGGGAGGACGAAGATTTGGCGACGCAGCGGTGCCGATCAAGATCTGGAG
TCCGACGGGAGAACTAGCGGCTGGGACATGCGGCAGCGGTCACAACTCTG
GCATTCATGTGAGTCCCACGTCACCGTGGAAGCAGCAAGGTGGGAGGTGT
GTTGGGTCATCTGAGCTCTTCATGTGTTCACCGGGTGACGTCATTCCACG
TGATGTGCAGCAACTTTATCCGTTGGGAGCAATGTACACGTTTGTCGACA
GCCGTCACGATCGCAAACGTATGTTTGCTTTGGAGTGGGATCGAGTAGCA
CTCCAAGACGAGTTGCTTCGCCAATACCGTGTTTGGATGAGAGATGCTTC
TGCTTCATTCGAATGGGAAGGTGCATGGGCACTTGACTACAAGGGCGACT
GGCGCCAGATGCGCGGGTATTATGGTACGAATATCCGAACGCTTTTGTCT
CCTAACGAGCAAGAGATTTTGTTTCAGAGGATAGAGTCGGAGAACGAAGA
TCGACCGCGTGCACAGCCGGAATCGTGCGCAATGAGTCAAGAGGATGTAG
CAGCGATGCCCACAGCGGACGAACCTGACCTGACTCAGGAAAGTTGTGTT
TCGTGTGCGGTGGTCCCGGAGCTCACGGCCGGGGACGGAGCA
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