mRNA_P-littoralis_Contig769.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig769.5.1
Unique NamemRNA_P-littoralis_Contig769.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig769.5.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 1.970e-34
Identity = 71/137 (51.82%), Postives = 89/137 (64.96%), Query Frame = 3 
Query:  570 EVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARDGDGEAIAVDPKVSREVFEFVTRKYQNCRMGD 980
            E EW+ FVD +K +SA  A+  + EL  +V EV RR++   G GLLF TKVF EF   LE GY+HILS+PFLLGAY GD P E LRV+ E+ AV+ +WA C     G       D KV+ EVF F+ +K+ NCRMGD
Sbjct:  226 EREWVSFVDLNKSASAGAAVEKDKELEHLVGEVKRRHDEINGAGLLFATKVFFEFTYALEIGYFHILSKPFLLGAYLGDLPGETLRVVREATAVRDAWAECCPPSSGSVN-FEWDSKVAHEVFLFIVQKWHNCRMGD 361
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BLAST of mRNA_P-littoralis_Contig769.5.1 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.160e-32
Identity = 64/118 (54.24%), Postives = 82/118 (69.49%), Query Frame = 3 
Query:  570 EVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARDGDGEAIAVDPKV 923
            E+EWMW VDRHKY S + A   E EL  V  EV RRN+P    GL+F T +FL+ +LTLESGY+H+LSQP  LG+Y G+ PEEILR++ ESP VQ +W AC  AR+G   +   DP++
Sbjct:  235 EIEWMWIVDRHKYPSKRAAEGNEMELRGVTEEVQRRNDPTRPRGLVFVTSLFLKLLLTLESGYFHVLSQPAFLGSYLGNLPEEILRLVSESPTVQRAWDACCQAREGG--SFHADPEM 350
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BLAST of mRNA_P-littoralis_Contig769.5.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 4.400e-29
Identity = 63/160 (39.38%), Postives = 95/160 (59.38%), Query Frame = 3 
Query:  576 EWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARDGDGEAIAVDPKVSREVFEFVTRKYQNCRMGDWTRRVSRMTSISKAQASVALRTELK 1055
            EW + V  +   S+  AI  +  L D+V EVD RN+P  G GLLFPT  + EFV  +E+G YH L  P+ LG Y GD   EILRV+ ES  V+ +WA C  +           P++  ++++FV +K+ N RMGD+ RR+S+ +++  ++  +ALR  L+
Sbjct:  167 EWDFIVQHNHSPSSAGAIERDPILQDMVGEVDARNDPVNGAGLLFPTLAWYEFVFHVENGIYHFLRDPYFLGTYLGDLSAEILRVVTESSEVRRAWAKCCPSAVAP-PPFEAQPEILDDIYKFVLQKFHNVRMGDFARRLSQNSTLRLSKGELALRQNLR 325
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BLAST of mRNA_P-littoralis_Contig769.5.1 vs. uniprot
Match: D7G5R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R0_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 4.890e-23
Identity = 56/123 (45.53%), Postives = 73/123 (59.35%), Query Frame = 3 
Query:  570 EVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARDGDGEAIAVDPKVSREVF 938
            E EW+ FVD +K +S   A+  + EL  +V EV RRN+   G GLLF TK F EF    E GY+HILS+PFLLGAY    P ++LRV+ E+  ++ +WA C     G       D KV+ EVF
Sbjct:  168 EREWVSFVDLNKSASEGAAVEKDKELEHLVGEVKRRNDEINGAGLLFATKAFFEFTYASEIGYFHILSKPFLLGAYLVGLPGDMLRVVSEATEIRDAWAECCPPSSGSVN-FEWDSKVAHEVF 289
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BLAST of mRNA_P-littoralis_Contig769.5.1 vs. uniprot
Match: D7FQM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM3_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.540e-10
Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 2 
Query:   56 LADPEAIVQRLVDAVDRLFTEHYRELIPLWDMTKGLAATRKVILDEWTSLVDILAATSKGKGTTKEASKFTLERFGRW 289
            + D   + +++  A + LF EH+  L+ LW   K LA TR      W  LVD+ A  SKGKG+TKEAS FTL RF  W
Sbjct:   43 IRDAADVGEKVDAAAEGLFREHFPWLLDLWIQVKSLAPTRLFNATSWALLVDVQARVSKGKGSTKEASNFTLARFASW 120
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BLAST of mRNA_P-littoralis_Contig769.5.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 4.780e-8
Identity = 42/132 (31.82%), Postives = 62/132 (46.97%), Query Frame = 3 
Query:  576 EWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARDGDGEAIAVDPKVSREVFEFVTRKYQNCR 971
            EW + V  +   S+  AI  +  L D+V EVD RN+P  G GLLFPT  +              LS+         D P EILRVI ES  V+ +W  C  +           P++  ++++FV +K+ + R
Sbjct:  182 EWDFIVQHNHSPSSAGAIERDPILKDMVGEVDARNDPAAGAGLLFPTLAWY-------------LSR---------DLPAEILRVITESSEVRRAWGKCCPSAVAH-PPFEAQPEILDDIYKFVLQKFHSFR 290
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig769.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FVM7_ECTSI1.970e-3451.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7M3_9PHAE1.160e-3254.24Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KW14_9PHAE4.400e-2939.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5R0_ECTSI4.890e-2345.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQM3_ECTSI1.540e-1044.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9K2_9PHAE4.780e-831.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig769contigP-littoralis_Contig769:4119..5587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1058
Hectar predicted targeting categoryother localisation
Exons2
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791583.896107-CDS-P-littoralis_Contig769:4118..45951680791583.896107-CDS-P-littoralis_Contig769:4118..4595Pylaiella littoralis U1_48CDSP-littoralis_Contig769 4119..4595 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791583.9101384-UTR-P-littoralis_Contig769:4595..47741680791583.9101384-UTR-P-littoralis_Contig769:4595..4774Pylaiella littoralis U1_48UTRP-littoralis_Contig769 4596..4774 -
1680791583.9240086-UTR-P-littoralis_Contig769:5185..55871680791583.9240086-UTR-P-littoralis_Contig769:5185..5587Pylaiella littoralis U1_48UTRP-littoralis_Contig769 5186..5587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig769.5.1prot_P-littoralis_Contig769.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig769 4119..4595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig769.5.1

>prot_P-littoralis_Contig769.5.1 ID=prot_P-littoralis_Contig769.5.1|Name=mRNA_P-littoralis_Contig769.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=159bp
MWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLE
FVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTA
RDGDGEAIAVDPKVSREVFEFVTRKYQNCRMGDWTRRVSRMTSISKAQAS
VALRTELKV
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mRNA from alignment at P-littoralis_Contig769:4119..5587-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig769.5.1 ID=mRNA_P-littoralis_Contig769.5.1|Name=mRNA_P-littoralis_Contig769.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1469bp|location=Sequence derived from alignment at P-littoralis_Contig769:4119..5587- (Pylaiella littoralis U1_48)
GGGGACCGCCAGCTCCCGGACGCAGGCCTTGTTGGATGCCCACGCAGACA
AGCTGCTGGCGGACCCGGAAGCCATCGTTCAGCGTCTCGTGGATGCCGTC
GATCGACTTTTCACCGAGCACTACAGAGAGTTGATTCCCCTTTGGGATAT
GACGAAGGGTCTGGCGGCCACGCGCAAGGTAATCCTCGACGAGTGGACAT
CATTGGTTGACATCCTCGCAGCAACGAGCAAGGGGAAAGGGACGACGAAG
GAGGCTTCCAAGTTCACGTTGGAGCGCTTCGGGCGATGGGGGGCACTTTG
CAATGGTGGCTAGGTCACTATGAGGTCCAGGAGGCGGTGGAGCGCGAGCC
CAAGGACCTCACCCTCCACCGGCTAGCGGGCATCATCGGCCAGGTGGACG
AGGTATGGGCATATGTTCTGCTGTTGTTGCATTGTGTTTCGTTGGTCGTG
TAAAATTTGCGCCTGCATGTGTGGGCGCAAATGGGTATGTTTACTTTGCG
GATGGGGGCCTTACCAGAGTGTCTCACCTCTCAATTTTCTCACGGGTCAT
ACGGCATACTCCAAGAGTTCTTGCATGCCTTGCGGCGCTTCGAAAGACGC
GCGAAGTCTGGTAGGTTCTTCATGTGTAGCTCGACTGAAAAGTAATTATT
TGGCCTACGCTCGTTTGTTTCAGCAGTGAGGGCTGGAATGATGCCCGCCG
TTAAATTTGTGGCGTTAATCTAGGCCTGATCTTTTACAAACCCTCGTGCC
GTCGTGCGTCTCGCCCGTTGTTCGCTCCCGACTTGTTCCATCTGTCCGTT
TTCTGTTCCGAAGGAGCTGTACAGGCTGTTTGTCCAAGAGAAGAGGAAGG
CGAACTCGGTCACCCTCGAGTACCCGAAGCAACAGATAGCCATGTCGCCA
GCGCGCATGCGGATCTTGTACTTCATCGCCGGGTGGTTGTTGAGCAGGAT
TTGGAAACACGTCCGTAGGAACAAGGTGGGGAGGTCGAATGGATGTGGTT
CGTGGATCGCCACAAGTACTCGTCCGCGCAGGACGCCATACGGTGCGAGG
GAGAACTGACCGATGTCGTGCGTGAGGTAGATCGGAGGAACGAACCAAAG
GGGGGTACGGGACTGTTGTTTCCCACTAAAGTGTTCCTCGAATTCGTTTT
GACGCTCGAGTCTGGGTACTACCACATCCTGTCACAGCCATTTCTTTTGG
GCGCGTATCGCGGCGACTTTCCGGAGGAGATTTTGCGGGTGATACTAGAA
TCACCCGCAGTTCAAAGTAGTTGGGCAGCTTGCTGGACGGCTCGTGACGG
GGACGGTGAAGCCATCGCTGTTGATCCCAAAGTGTCACGTGAAGTGTTCG
AATTCGTGACTCGTAAATACCAGAATTGCCGTATGGGAGACTGGACCCGG
CGTGTTAGTCGTATGACCTCCATTAGCAAAGCGCAGGCATCGGTTGCGCT
GCGCACGGAACTTAAGGTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig769:4119..5587-

>mRNA_P-littoralis_Contig769.5.1 ID=mRNA_P-littoralis_Contig769.5.1|Name=mRNA_P-littoralis_Contig769.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig769:4119..5587- (Pylaiella littoralis U1_48)
ATGTGGTTCGTGGATCGCCACAAGTACTCGTCCGCGCAGGACGCCATACG
GTGCGAGGGAGAACTGACCGATGTCGTGCGTGAGGTAGATCGGAGGAACG
AACCAAAGGGGGGTACGGGACTGTTGTTTCCCACTAAAGTGTTCCTCGAA
TTCGTTTTGACGCTCGAGTCTGGGTACTACCACATCCTGTCACAGCCATT
TCTTTTGGGCGCGTATCGCGGCGACTTTCCGGAGGAGATTTTGCGGGTGA
TACTAGAATCACCCGCAGTTCAAAGTAGTTGGGCAGCTTGCTGGACGGCT
CGTGACGGGGACGGTGAAGCCATCGCTGTTGATCCCAAAGTGTCACGTGA
AGTGTTCGAATTCGTGACTCGTAAATACCAGAATTGCCGTATGGGAGACT
GGACCCGGCGTGTTAGTCGTATGACCTCCATTAGCAAAGCGCAGGCATCG
GTTGCGCTGCGCACGGAACTTAAGGTT
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