mRNA_P-littoralis_Contig769.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig769.14.1
Unique NamemRNA_P-littoralis_Contig769.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig769.14.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 2.100e-6
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = -3 
Query:  170 DNVSYVLARTIRSNLHQEAAKLIGCTGMGNQCKRG 274
            DNV YVLART+RSNL   AA+ IG TG GNQC+RG
Sbjct:  127 DNVPYVLARTVRSNLQYLAAQEIGATGQGNQCRRG 161
[Close]
BLAST of mRNA_P-littoralis_Contig769.14.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 8.730e-6
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = -3 
Query:  161 DNVSYVLARTIRSNLHQEAAKLIGCTGMGNQCKRGQCL 274
            DNVSYVLART+R  L   AA+ IG +G GNQC+RG C 
Sbjct:  160 DNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCF 197
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig769.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNQ5_ECTSI2.100e-671.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7P3_9PHAE8.730e-663.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig769contigP-littoralis_Contig769:16110..16434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size326
Hectar predicted targeting categorymitochondrion
Exons1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791583.8098872-CDS-P-littoralis_Contig769:16109..164331680791583.8098872-CDS-P-littoralis_Contig769:16109..16433Pylaiella littoralis U1_48CDSP-littoralis_Contig769 16110..16433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig769.14.1prot_P-littoralis_Contig769.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig769 16110..16433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig769.14.1

>prot_P-littoralis_Contig769.14.1 ID=prot_P-littoralis_Contig769.14.1|Name=mRNA_P-littoralis_Contig769.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp
RVLAAPSARGLRNTAVSLSPTAIRNHHQWLNSARTTSVGVRSIPFPGNIC
IARASTAHACTDYPCPYTRSISPPPGANCCGWCEQGHTTRCRIFFPSFGR
SSTPYQVM
back to top

mRNA from alignment at P-littoralis_Contig769:16110..16434+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig769.14.1 ID=mRNA_P-littoralis_Contig769.14.1|Name=mRNA_P-littoralis_Contig769.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=325bp|location=Sequence derived from alignment at P-littoralis_Contig769:16110..16434+ (Pylaiella littoralis U1_48)
CGAGTTCTCGCCGCTCCGTCCGCTCGTGGGCTACGAAATACAGCAGTTTC
TCTTTCCCCGACAGCAATTCGCAACCATCATCAGTGGCTCAACAGTGCTA
GAACCACTTCAGTGGGTGTTCGGTCCATTCCTTTTCCAGGGAACATCTGC
ATCGCTCGTGCAAGCACTGCCCACGCTTGCACTGATTACCCATGCCCGTA
CACCCGATCAATTTCGCCGCCTCCTGGTGCAAATTGCTGCGGATGGTGCG
AGCAAGGACATACGACACGTTGTCGTATTTTTTTCCCTTCCTTTGGGCGA
TCCAGCACGCCCTATCAGGTCATGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig769:16110..16434+

>mRNA_P-littoralis_Contig769.14.1 ID=mRNA_P-littoralis_Contig769.14.1|Name=mRNA_P-littoralis_Contig769.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig769:16110..16434+ (Pylaiella littoralis U1_48)
CGAGTTCTCGCCGCTCCGTCCGCTCGTGGGCTACGAAATACAGCAGTTTC
TCTTTCCCCGACAGCAATTCGCAACCATCATCAGTGGCTCAACAGTGCTA
GAACCACTTCAGTGGGTGTTCGGTCCATTCCTTTTCCAGGGAACATCTGC
ATCGCTCGTGCAAGCACTGCCCACGCTTGCACTGATTACCCATGCCCGTA
CACCCGATCAATTTCGCCGCCTCCTGGTGCAAATTGCTGCGGATGGTGCG
AGCAAGGACATACGACACGTTGTCGTATTTTTTTCCCTTCCTTTGGGCGA
TCCAGCACGCCCTATCAGGTCATG
back to top