mRNA_P-littoralis_Contig769.39.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig769.39.1
Unique NamemRNA_P-littoralis_Contig769.39.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig769.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig769contigP-littoralis_Contig769:70093..74053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size579
Hectar predicted targeting categoryother localisation
Exons2
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791583.6773236-CDS-P-littoralis_Contig769:70092..702211680791583.6773236-CDS-P-littoralis_Contig769:70092..70221Pylaiella littoralis U1_48CDSP-littoralis_Contig769 70093..70221 -
1680791583.6900313-CDS-P-littoralis_Contig769:73604..737721680791583.6900313-CDS-P-littoralis_Contig769:73604..73772Pylaiella littoralis U1_48CDSP-littoralis_Contig769 73605..73772 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791583.7081861-UTR-P-littoralis_Contig769:73772..740531680791583.7081861-UTR-P-littoralis_Contig769:73772..74053Pylaiella littoralis U1_48UTRP-littoralis_Contig769 73773..74053 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig769.39.1prot_P-littoralis_Contig769.39.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig769 70093..73772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig769.39.1

>prot_P-littoralis_Contig769.39.1 ID=prot_P-littoralis_Contig769.39.1|Name=mRNA_P-littoralis_Contig769.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
MNTPLSRAVPAVKDCEERLDPAHHTQLLQTVRKKELDRVGAALRMIKTSL
SATRNKAPVRATKRLSTAMGHEAIADACAIDSASAGGAAITIPVQPTTS
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mRNA from alignment at P-littoralis_Contig769:70093..74053-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig769.39.1 ID=mRNA_P-littoralis_Contig769.39.1|Name=mRNA_P-littoralis_Contig769.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3961bp|location=Sequence derived from alignment at P-littoralis_Contig769:70093..74053- (Pylaiella littoralis U1_48)
GGTATTTGGACACTGCTGACTTCCCCCAAACAAAGTCCAATCGCCCGGCC
TTGAGCAAATGTTAATGTTATGACTTTTTCCCGGAAAAAGTCGGTAAGTT
TCCTCGTGGTCGGTAGTTAGTTGAAAATACAAACACTTCGAAGTACACGA
TATACTCTTCCCCCCCCACACACAGCAGCTGCACTTTGAGCACAACATAG
CAAGCCCCATTTTTTTGCGCACACCAATTTGGGGACTCATTTCCGCATCA
TCAGGAGAGCTTTTGGAAGCCCGCACACGATATGAATACTCCTCTCAGCC
GTGCTGTACCTGCCGTCAAGGATTGCGAGGAACGCCTCGATCCCGCGCAC
CACACTCAACTCCTGCAAACCGTCCGCAAGAAGGAGCTCGACCGCGTGGG
CGCTGCCCTTCGCATGATCAAGACCAGCTTGTCAGCTACGAGAAACAAGG
TGTGTGTGTGTACTGCAGAGCACGCCGCGAACGAGAAATCCGGACGGTGC
CTACAGACCGTGAATGCATTTACCTCATAAAACATACGAAGTACCAAATA
TGTGTAGTATGATCGGAGAGAAGGGGGATCGAGGGACAACTACGACTGAC
AACAGCTACGCAGCATGCTGCATTCTGACAAAAGAACGCGCTGCATAAAG
TTACGGTTGGAGTAAAGTAGCACCGATGAACATACATACGCCGCTGTTGG
GGCGCGGGTGCTCCTGGAGGTCGGTAAAGAGGAGGGGGTGAGGAGGTCGA
GAGCGACACCGACCCCCAATATTCGCAACAAAGAGCTTTCGGCTGATGAG
TGGGTGGGCGACAGTTACGTGTCATATTCTTCTTTTGTTGCCCAAGCAAT
ACGGTCAGGGTTGTTGTGCAGTGTGATTAATGTCTCTGCCTCGTTTTTGT
TTCTGTGCTCATACGTGGGATATACCGCGTCGACAGCTTGTGAGCGATGG
GTATACGGTTGTCACGGTGTTAATTGGTTGTGAAGCTTTCCTACGGCGGA
GAGTTGCTGTGGAGAGCCCACAAAAAACAGAGCACAGTAATAAACTTGAG
GCAAGCGTAAGCAGGATGTCGAAACACAAAAAAATAGGAAAAACTGAAGA
AAATCATTTTCGTCAGCCCACAGGAAGACGAGGAACGAACTTGAGCGTAG
GAAAAATCACGGCTTCAGCTGGTCTTTGCTCGCTCCCGATTTAAGAGTTT
GAGCCTCAACCTCAGCTTAGCATTTCTCATCTGCGGGCCGCAACTGTATC
TGAACGGACGTACTGTCCGTCACAGCAGTGGCATGCGAAAGCAGGGTGAG
AGTTGACTTGAGCGGGTGTCGAACTAATACCTTGTTATGTTCGGCGGTGG
ACTTCTCTTTACGTAGATGAGTGTCGAACGTGTTTCTGTTGTTCGGTCGT
GGAAAACACCGAGGAAGAGTGGGGTGTGCCTGGCCAGTGTGTAGTTGTGT
GTTTGAATGTACTTCGAGGTATGTATTAACCGCTGGAGCCGAGAGAAATA
GGGGGGTCGCATGATAGATGCGGGCACGAATGAATACAAATCTTCAGCAA
TTAATAGCTCGAGCCTGATATGCGTACATCCAAAATGTGTCCCTGCCTGC
CTGCCCTCTCAAATACGGTGGTGGTGGTAGTCAGGTTCTGAGTACTTGTA
GTAGTAGGTGGACAAGAGTCTTGCACAAACATGAATACGTACGCTGGATA
TGTTTTTATGATGATGTATGTTGAACGTGGTTTGTTTGTGTTTCGTTCGT
GAAAAAGGCACCGACTAGGAGAGAAGGAATGTGGGCATTCGTATTGTACG
ATATGCACTTATATTTGATGTTGTACCGAAGGCTGAACGTCAAACGTGGA
TATCCGCCGAAATATATATAGACAGGCGCCAGACGAATGGGACGAATTCA
CACCGAAGCAGTACGTTTGCATGACGGGATGTGGGTTACTTGCTCCTGAT
GGATGTGTTTGTGTCGTGACGTTCTATTCGAGAGCATGCGTGCGTATTGG
CGGCATTGGTTGTGTTGTTTGTTGTGTAAAAGAGCCAAGGTGGTCCTCCT
TTGCAGGTTGCACTGCTGCTGCTGCTTGCTGCACATTGTTGTGTGGTTGC
TGATTTATTGATGCTGCGTCCCCATGTGTCAAGCGCTGTTCGTTGTTGTA
ATTGCATGCACACGCTTGTTACCTACCAGGTATGATATATGCATGTACAA
AATACTCGAAGAGCATCTGCGAAGTAGAAGATGGATCAGACAAAACTTAC
CAATATACTCGAAGTATGTTCCCTGCATCGTAAGTGTTGTCGCACTATTT
TATCGGTTATCTTCCGCGCGGCTCAGAGCACGAACTCTGTCCGTCCGATG
GTGGTGCGCGCATTCAGACACAGGAGAGCCACGTACTTCGCGCGGTACCA
CTCTGAAATTAACAACTTTACTGCAGATAGTTAGCTCGATGTAAACACTG
AAATGGCGTGTGGCACACCTGAGGTATGGATCCTGCGCCAGTCTAGCGTA
CGACGTCGCTTGTGTCAGGCGCCGTGACAACAGCAGTATCGAAGATCGCA
ATGGACGAGAGAAAAGGAGTAGTGGTTGGGGGAGTAATTGGCACTGGTCC
CGCCGGGGAAAATGACATCTGTTTTTCCCGCCGTCTTCCCTGTGCCGGGC
GCCACGAAGCACCGATGTTTATACAAGGACCTACTATACTGCATGAAATA
AATTCCAAATGGATAAACGTACGCCGCGGAGCCAGCTGTGTTAGTGTTTT
ACTGCATGTTAGGGTAAGAAACAGAGTTATAGTTACATCTGTTGGTGGTT
GGCCGTGATTTCCTCCTTGAACTACCGGCATGATAAATGCACCCGGCCAT
ATGTTGTCTTTGAGGCAACTTATAGCGCGAGATCCACGATCGGCGTAGAA
CCTCAACAAAACTGCCGTGCGGTCATCACAACTTTGAGCGGGAGCGCCAC
GATCGGCTCCGTGATCTGAAACTAGGCATCGACCACTGTTGTGCAGCGAT
TTCCGCCGCGCGATTCTTTCTCTGTGACGTGACTTATCGTTGGCGCCGTG
GCGGGCAGTTTCGCTTCGGCGTGATGTCCAGGGAAGAATACCACCATCAG
TTTTCTCTTCGATTGCGTCATTATTGCCTCGCAAGGTCCCTGCGAAAAAC
TTGAGAATTGCACGATATTTGCTTTTCAAAATATTGTTTTTTTTCCGGCC
AAGACAAGATATGCTTTTATATTATTCGGTAGGTTGGTACAGCAATTTCC
GAGTTTTAAAAAATGCATTCAAGTGGTTCAGGACCCAGCTCTCCCTTTCG
TCTGAATGCCACTTATTGCAGATAGTTTGTAAGGACGACAAGTGGTGTTG
ATTGGACATTTTAGCAGGTAGACGTGAACCTCTTTGAGCGGGTGAAGCAG
CAGCGGCTGGGCGCCGAAGTACGGAGATATACTGCCGCAACACCATAACG
AATCACCCTCCTTCCTTGTCGAATGGATTGCGTTTGTTCAGCAGCTCTGT
GCGGTTGCTCCAATCTACTACGTCTGTACGGAACAACGCTGTTGATCTGA
AGCACAAACCCTGAACATAACTGACGCTGACTGTGGCTGTATCGAATATT
CTTTGTGCTTCAGGCGCCCGTCCGAGCCACCAAGCATCTCTCGACGGCGG
TGGGATATGAAGCAATTGCGACAACATAACAAATCATCCTTCTTCCTCGT
CGAATTAATTACGTTTGTTTAGCAGCTCTGTATACCACGCCTGTACGGAA
CAACACTGTTGGTCTGAAGTACAAACCCTGCTCATACCTAGCGCTGACTG
CGTGACTAAATCGAATGCTCTTTGTGCTTCAGGCGCCCGTCCGAGCCACC
AAGCGTCTCTCGACCGCGATGGGACATGAAGCAATTGCGGATGCATGCGC
CATCGACTCGGCCTCAGCGGGCGGTGCTGCGATCACCATTCCTGTACAGC
CGACTACGAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig769:70093..74053-

>mRNA_P-littoralis_Contig769.39.1 ID=mRNA_P-littoralis_Contig769.39.1|Name=mRNA_P-littoralis_Contig769.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig769:70093..74053- (Pylaiella littoralis U1_48)
ATGAATACTCCTCTCAGCCGTGCTGTACCTGCCGTCAAGGATTGCGAGGA
ACGCCTCGATCCCGCGCACCACACTCAACTCCTGCAAACCGTCCGCAAGA
AGGAGCTCGACCGCGTGGGCGCTGCCCTTCGCATGATCAAGACCAGCTTG
TCAGCTACGAGAAACAAGGCGCCCGTCCGAGCCACCAAGCGTCTCTCGAC
CGCGATGGGACATGAAGCAATTGCGGATGCATGCGCCATCGACTCGGCCT
CAGCGGGCGGTGCTGCGATCACCATTCCTGTACAGCCGACTACGAGC
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