mRNA_P-littoralis_Contig765.9.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig765.9.2
Unique NamemRNA_P-littoralis_Contig765.9.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig765.9.2 vs. uniprot
Match: A0A6H5JWF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF7_9PHAE)

HSP 1 Score: 597 bits (1540), Expect = 3.630e-199
Identity = 434/819 (52.99%), Postives = 476/819 (58.12%), Query Frame = 2 
Query:   26 MNDEGDAKQGINREGPLRSITSPPFAGPVAHVNSGPLAHNHKDASNACISTIGGAAGAAPATLPPTITPXXXXXXXXXXXXXXXXXXXXXXAAHPLDYASQXXXXXXXXXXXXXXXXXXXXXXXXXPFSAGGVGSSPPLQAGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPLSHLLMRPGGMQMERDTPPVILPPTTAHQQLGGATELRFDFSSNAPPTAVEAQQAVLSPPPLTAEPISARAGEQGSGGDSAPPGFDRVGGEAGFXXXXXXXSAKAPPMPALXXXXXSYDAAKHYQLXXXXXXXQRALAP-PVPAALTGVALPHPPRPXXXXXXXXXXXXXXXX----------------------KSLDTLVAEFLSSEAPPPPEPVNETLALGDPDGWVGALGQLARRRAWRKLVEIAGTMLVAHRGGGAPGLTAEQATDLRLRRAMGMLKVGRAADAAEAAEEAGREAGQPPLAAVSIAARVAAAGAKSLCERAAEGEALDELTALKFELEGVIAACDGDAARAXXXXXXXXXXXXXXXXXTV------------AEAITWRRRVMSCLVNTFVGRGNWRQALELLEDLGKEQC--------SSSSRTSSTAAG---GA------LRVELLSRVGRVFLQFGSLGDAEVYFRRAEKAAEAMGGTKEGNPRVLINRGLLDFSKNEFVAAQENFRNAASAAV---AKEEPPDDTNDGWLWATLDQGTGLVDSALNNLSLAMVYSCDVMRGVKTLEALIRKDPLLYMLDVVIFNLCTLYDLSFDAIASAKKKRTLQAVAQRYRLEDIDPASFRMS 2317
            MN+E D+KQGI+REGPLRSI SPPFAGPVAHVNSGPLAHNH D S A  S         P   PP  T                       A+HPLDY SQ                         P       ++ P+ + +T                            ++PLSHLL+RP GM+MERD PP              AT  +FDFS N P           +  P  ++                                    S KAPPMPAL XXXX          XXXXXXX     P P PA L+GVALP  P P   XXXXXXXXXXXXX                      K+LD LV EFLS+EAPPPPEPVNETLALGDPDGWV ALGQLA RRAWRKLVEIAGTMLVAHRGGGAPGLTA+QA DLRLRRAMGMLK+GRAA+AAEAA                                 AE EALDELT LKFELEGVIAA DG +A A            XXXXX              AEA TWRRRVM  LVN FV RGNWR AL LLEDLG++QC        SSSS    T A    GA      LRVELLSR+GRVFLQFGSL DAEVYFRRAE AA A+G     NPR+L+NRGLL+FS+NEFVAAQENFRNAA+ A    AKEEPPDD++D WLWATLDQG GL+D+ALNNLSLAMVYSCDV+RGV+TLE LIRKDP LYMLDVVIFNLCTLYDLSFDA+ASAKKKRTLQAVAQR+RLEDIDP+SFRMS
Sbjct:    1 MNEEDDSKQGISREGPLRSIASPPFAGPVAHVNSGPLAHNHADNSAALSSH--------PGAPPPAAT-------------------AASAASHPLDYDSQVHLPQQQQQRLPLQSPPRGPLSGGIPLPV--APTAAPISSSSTSS--------------------------NNPLSHLLLRPNGMRMERDAPPASXXXXXXXXATEPATA-KFDFSGNPPXXXXXXXXXXXTAGPEVSD------------------------------------SPKAPPMPALPXXXXXXXXXXXXXXXXXXXXXXXRSQPAPSPATLSGVALPCIPPPQLPXXXXXXXXXXXXXXXXXXXXXXXXXXYPPRQPPQEKTLDALVLEFLSTEAPPPPEPVNETLALGDPDGWVAALGQLAWRRAWRKLVEIAGTMLVAHRGGGAPGLTADQAMDLRLRRAMGMLKLGRAAEAAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAEEEALDELTVLKFELEGVIAAGDGPSALAPSPSEDGMEATTXXXXXXXXXXXXXXXXXXXAEATTWRRRVMLNLVNMFVARGNWRMALGLLEDLGEDQCGERSTPACSSSSHEDVTGAAREEGARAPVDDLRVELLSRIGRVFLQFGSLEDAEVYFRRAEAAAAAVGS----NPRILVNRGLLNFSRNEFVAAQENFRNAATEAAMLAAKEEPPDDSDDNWLWATLDQGAGLLDTALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDPSSFRMS 723
[Close]
BLAST of mRNA_P-littoralis_Contig765.9.2 vs. uniprot
Match: D8LLE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE2_ECTSI)

HSP 1 Score: 418 bits (1074), Expect = 2.710e-135
Identity = 249/407 (61.18%), Postives = 268/407 (65.85%), Query Frame = 2 
Query: 1106 EAPPPPEPVNETLALGDPDGWVGALGQLARRRAWRKLVEIAGTMLVAHRGGGAPGLTAEQATDLRLRRAMGMLKVGRAADAAEAAEEAGREAGQPPLAAVSIAARVAAAGAKSLCERAAEGEALDELTALKFELEGVIAACDGDAARAXXXXXXXXXXXXXXXXXTVAEAITWRRRVMSCLVNTFVGRGNWRQALELLEDLGKEQCSSSSRTSSTAAGGALRVELLSRVGRVFLQFGSLGDAEVYFRRAEKAAEAMGGTKEGNPRVLINRGLLDFSKNEFVAAQENFRNAASAAV---AKEEPPDDTNDGWLWATLDQGTGLVDSALNNLSLAMVYSCDVMRGVKTLEALIRKDPLLYMLDVVIFNLCTLYDLSFDAIASAKKKRTLQAVAQRYRLEDIDPASFRMS 2317
            EAPPPPEPVNETLALGDPDGWV ALGQLA RRAWRKLVEIAGTMLVAHRGGGAPGLTA+QA DLRLRRAMGMLK+GRAA+AAEAA                             CE  AE EALDELTALK       AA   + ARA                                                                        +RVELLSR+GRVFLQFGSL DAEVYFRRAE AA   G     NPR+L+NRGLLDFS+NEFVAAQENFRNAA+ A    AKEEPPD ++D WLWATLDQG GL+D+ALNNLSLAMVYSCDV+RGV+TLE LIRKDP LYMLDVVIFNLCTLYDLSFDA+ASAKKKRTLQAVAQR+RLEDID +SFRMS
Sbjct:    2 EAPPPPEPVNETLALGDPDGWVAALGQLAWRRAWRKLVEIAGTMLVAHRGGGAPGLTADQAMDLRLRRAMGMLKLGRAAEAAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCEGEAEEEALDELTALKV----TAAAAGEEGARASVDN--------------------------------------------------------------------VRVELLSRIGRVFLQFGSLEDAEVYFRRAEAAAAVAGS----NPRILVNRGLLDFSRNEFVAAQENFRNAATEAAMLAAKEEPPDGSDDNWLWATLDQGAGLLDAALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDASSFRMS 332
[Close]
BLAST of mRNA_P-littoralis_Contig765.9.2 vs. uniprot
Match: A0A6H5KFR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR3_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 4.740e-43
Identity = 86/110 (78.18%), Postives = 97/110 (88.18%), Query Frame = 2 
Query: 1988 VAKEEPPDDTNDGWLWATLDQGTGLVDSALNNLSLAMVYSCDVMRGVKTLEALIRKDPLLYMLDVVIFNLCTLYDLSFDAIASAKKKRTLQAVAQRYRLEDIDPASFRMS 2317
             A+EEPPD ++D WL ATLDQG GL+DSAL NLSLAM  SCDV+RGV+TL+ LIRK+P LYMLDVVIFNLCTLYDLSFDA+ASAKK RTLQAV QR+RLEDID +SFRMS
Sbjct:    3 AAEEEPPDGSDDIWLRATLDQGAGLLDSALTNLSLAMC-SCDVLRGVRTLKGLIRKNPRLYMLDVVIFNLCTLYDLSFDAVASAKK-RTLQAVTQRFRLEDIDTSSFRMS 110
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BLAST of mRNA_P-littoralis_Contig765.9.2 vs. uniprot
Match: UPI001BF4C476 (trafficking protein particle complex subunit 12 n=2 Tax=Alosa TaxID=34772 RepID=UPI001BF4C476)

HSP 1 Score: 89.0 bits (219), Expect = 2.630e-14
Identity = 57/169 (33.73%), Postives = 92/169 (54.44%), Query Frame = 2 
Query: 1769 RVELLSRVGRVFLQFGSLGDAEVYFRRAEKAAEAMGGTKEGNPRVLINRGLLDFSKNEFVAAQENFRNAASAAVAKEEPPDDTNDGWLWATLDQGTGLVDSALNNLSLAMVYSCDVMRGVKTLEALIRKDPLLYMLDVVIFNLCTLYDLSFDAIASAKKKRTLQAVAQR 2275
            RV+LLS +GR+FLQ G +  AE YF+  EKA +A G  +  +  VL+NR  +  S+N +  A   F     A V K +P +                    A NN ++ ++Y   +   ++ LE+L+++DP LY+ + V+FNL T+Y+L   + ++ KK+  L+AVA R
Sbjct:  665 RVQLLSGIGRIFLQIGDIKTAEKYFQEVEKACQAKGEGQMQDTSVLMNRAFVYLSQNNYSEAHTCF-----AGVLKIDPMNPV------------------ANNNAAVCLLYLGRLKESLRQLESLVQQDPTLYLHESVLFNLTTMYELE-SSRSTQKKQALLEAVAAR 809
[Close]
BLAST of mRNA_P-littoralis_Contig765.9.2 vs. uniprot
Match: A0A8C1CIY7_CYPCA (Trafficking protein particle complex 12 n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1CIY7_CYPCA)

HSP 1 Score: 86.7 bits (213), Expect = 2.970e-14
Identity = 56/169 (33.14%), Postives = 91/169 (53.85%), Query Frame = 2 
Query: 1769 RVELLSRVGRVFLQFGSLGDAEVYFRRAEKAAEAMGGTKEGNPRVLINRGLLDFSKNEFVAAQENFRNAASAAVAKEEPPDDTNDGWLWATLDQGTGLVDSALNNLSLAMVYSCDVMRGVKTLEALIRKDPLLYMLDVVIFNLCTLYDLSFDAIASAKKKRTLQAVAQR 2275
            RV+LLS +GR+FLQ G +  AE YF+  EKA ++ G T + +  VL+NR  +  S+N +  A   F     ++V K +P +                    A NN ++ ++Y   +   +  LE+L+ KDP LY+ + V+FNL T+Y+L   + ++ KK+  L+A A R
Sbjct:  227 RVQLLSGMGRIFLQIGDIRTAERYFQDVEKACQSKGKTPDEDTSVLMNRAFVYLSQNNYADAHTCF-----SSVLKLDPKNPV------------------ANNNAAVCLLYLGRLKESLGQLESLVHKDPALYLHESVLFNLTTMYELE-SSRSTQKKQALLEAAACR 371
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BLAST of mRNA_P-littoralis_Contig765.9.2 vs. uniprot
Match: X1WHF9_DANRE (Trafficking protein particle complex subunit 12 (Fragment) n=1 Tax=Danio rerio TaxID=7955 RepID=X1WHF9_DANRE)

HSP 1 Score: 82.0 bits (201), Expect = 6.250e-14
Identity = 53/169 (31.36%), Postives = 88/169 (52.07%), Query Frame = 2 
Query: 1769 RVELLSRVGRVFLQFGSLGDAEVYFRRAEKAAEAMGGTKEGNPRVLINRGLLDFSKNEFVAAQENFRNAASAAVAKEEPPDDTNDGWLWATLDQGTGLVDSALNNLSLAMVYSCDVMRGVKTLEALIRKDPLLYMLDVVIFNLCTLYDLSFDAIASAKKKRTLQAVAQR 2275
            +V+LLS +GR+FLQ G +  AE YF+  E A ++ G T      VL+NR  +  S+N +  A   F     ++V + +P +                    A NN ++ ++Y   +   +  LE+L+ KDP LY+ + V+FNL T+Y+L   + ++ KK+  L+A A R
Sbjct:   47 KVQLLSGIGRIFLQIGDIRTAEKYFQDVENACQSKGKTATEETSVLMNRAFVYLSQNNYADAHTCF-----SSVLRLDPKNPV------------------ANNNAAVCLLYLGRLKESLGQLESLVHKDPALYLHESVLFNLTTMYELE-SSRSTQKKQALLEAAACR 191
[Close]
BLAST of mRNA_P-littoralis_Contig765.9.2 vs. uniprot
Match: A0A5A9NRB1_9TELE (Trafficking protein particle complex subunit 12 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9NRB1_9TELE)

HSP 1 Score: 87.0 bits (214), Expect = 1.000e-13
Identity = 55/169 (32.54%), Postives = 90/169 (53.25%), Query Frame = 2 
Query: 1769 RVELLSRVGRVFLQFGSLGDAEVYFRRAEKAAEAMGGTKEGNPRVLINRGLLDFSKNEFVAAQENFRNAASAAVAKEEPPDDTNDGWLWATLDQGTGLVDSALNNLSLAMVYSCDVMRGVKTLEALIRKDPLLYMLDVVIFNLCTLYDLSFDAIASAKKKRTLQAVAQR 2275
            +V+LLS +GR+FLQ G +  A+ YF   EKA E  G + + +  VL+NR  +  S+N +  A E F     ++V K +P +                    A NN ++ ++Y   +   +  LE+L+ KDP LY+ + V+FNL T+Y+L   + ++ KK+  L+A A R
Sbjct:  632 KVQLLSGIGRIFLQIGDIRTADKYFLEVEKACELKGKSPDEDTSVLMNRAFVHLSQNNYTDAHECF-----SSVLKIDPKNPV------------------ANNNAAVCLLYLGRLKESLGQLESLVHKDPALYLHESVLFNLTTMYELE-SSRSTQKKQALLEAAACR 776
[Close]
BLAST of mRNA_P-littoralis_Contig765.9.2 vs. uniprot
Match: A0A671VWS3_SPAAU (Trafficking protein particle complex 12 n=8 Tax=Sparidae TaxID=8169 RepID=A0A671VWS3_SPAAU)

HSP 1 Score: 86.3 bits (212), Expect = 1.820e-13
Identity = 55/169 (32.54%), Postives = 89/169 (52.66%), Query Frame = 2 
Query: 1769 RVELLSRVGRVFLQFGSLGDAEVYFRRAEKAAEAMGGTKEGNPRVLINRGLLDFSKNEFVAAQENFRNAASAAVAKEEPPDDTNDGWLWATLDQGTGLVDSALNNLSLAMVYSCDVMRGVKTLEALIRKDPLLYMLDVVIFNLCTLYDLSFDAIASAKKKRTLQAVAQR 2275
            RV+LLS +GR+FLQ G +  AE YF+  +KA + +G     N  VL+NR  +  S+N +  A  +F       V K +P +                    A NN ++ ++Y   +   +  LE L+++DP LY+ + V+FNL T+Y+L   + ++ KK+  L+AVA R
Sbjct:  682 RVQLLSGIGRIFLQIGDIKTAERYFQDVQKACQMIGSQPSHNTCVLMNRAFVYLSQNNYAEAHTSF-----IEVLKIDPKNPV------------------ANNNAAVCLLYLGQLKESLGQLEGLVQQDPALYLHESVLFNLTTMYELE-SSRSTQKKQALLEAVACR 826
[Close]
BLAST of mRNA_P-littoralis_Contig765.9.2 vs. uniprot
Match: A0A8C5FBJ1_GADMO (Trafficking protein particle complex 12 n=4 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5FBJ1_GADMO)

HSP 1 Score: 85.9 bits (211), Expect = 2.280e-13
Identity = 55/169 (32.54%), Postives = 88/169 (52.07%), Query Frame = 2 
Query: 1769 RVELLSRVGRVFLQFGSLGDAEVYFRRAEKAAEAMGGTKEGNPRVLINRGLLDFSKNEFVAAQENFRNAASAAVAKEEPPDDTNDGWLWATLDQGTGLVDSALNNLSLAMVYSCDVMRGVKTLEALIRKDPLLYMLDVVIFNLCTLYDLSFDAIASAKKKRTLQAVAQR 2275
            RV+LLS +GR+FLQ G +  AE YF+  EKA +A G        VL+NR  +  S+N +  A  +F     + V K +P +                    A NN ++ ++Y   +   +  LE L+++DP  Y+ + V+FNL T+Y+L   + ++ KK+  L+AVA R
Sbjct:  633 RVQLLSGIGRIFLQIGDIKTAERYFQDVEKACQATGSHPSHTTNVLMNRAFVHLSQNNYAEAHASF-----SQVLKVDPKNPV------------------ANNNAAVCLLYLGRLKESLGQLEGLVQQDPAQYLHESVLFNLTTMYELE-SSRSTQKKQALLEAVACR 777
[Close]
BLAST of mRNA_P-littoralis_Contig765.9.2 vs. uniprot
Match: A0A8C2WRZ9_CYCLU (Trafficking protein particle complex 12 n=9 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C2WRZ9_CYCLU)

HSP 1 Score: 85.9 bits (211), Expect = 2.350e-13
Identity = 56/169 (33.14%), Postives = 88/169 (52.07%), Query Frame = 2 
Query: 1769 RVELLSRVGRVFLQFGSLGDAEVYFRRAEKAAEAMGGTKEGNPRVLINRGLLDFSKNEFVAAQENFRNAASAAVAKEEPPDDTNDGWLWATLDQGTGLVDSALNNLSLAMVYSCDVMRGVKTLEALIRKDPLLYMLDVVIFNLCTLYDLSFDAIASAKKKRTLQAVAQR 2275
            RV+LLS +GR+FLQ G +  AE YF+  EKA +  G        VL+NR  +  S+N +  A  +F     A V K +P +                    A NN ++ ++Y   +   +  LE L+++DP LY+ + V+FNL T+Y+L   + ++ KK+  L+AVA R
Sbjct:  661 RVQLLSGIGRIFLQIGDVKTAERYFQDVEKACQMTGSQPGHTTCVLMNRAFVSLSQNNYTEAHASF-----AEVLKVDPKNPV------------------ANNNAAVCLLYLGRLKESLGQLEGLVQQDPALYLHESVLFNLTTMYELE-SSRSTQKKQALLEAVACR 805
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig765.9.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWF7_9PHAE3.630e-19952.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLE2_ECTSI2.710e-13561.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFR3_9PHAE4.740e-4378.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001BF4C4762.630e-1433.73trafficking protein particle complex subunit 12 n=... [more]
A0A8C1CIY7_CYPCA2.970e-1433.14Trafficking protein particle complex 12 n=2 Tax=Cy... [more]
X1WHF9_DANRE6.250e-1431.36Trafficking protein particle complex subunit 12 (F... [more]
A0A5A9NRB1_9TELE1.000e-1332.54Trafficking protein particle complex subunit 12 n=... [more]
A0A671VWS3_SPAAU1.820e-1332.54Trafficking protein particle complex 12 n=8 Tax=Sp... [more]
A0A8C5FBJ1_GADMO2.280e-1332.54Trafficking protein particle complex 12 n=4 Tax=Ga... [more]
A0A8C2WRZ9_CYCLU2.350e-1333.14Trafficking protein particle complex 12 n=9 Tax=Cy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig765contigP-littoralis_Contig765:50937..56549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LLE2
Preferred nameTRAPPC12
PFAMsTPR_16,TPR_19,TPR_2
Model size2880
Max annot lvl2759|Eukaryota
KEGG koko:K10865,ko:K17087,ko:K20309
KEGG Pathwayko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG ModuleM00291,M00292,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0000775,GO:0000776,GO:0003674,GO:0003824,GO:0004175,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0006810,GO:0006888,GO:0006996,GO:0007030,GO:0007049,GO:0007059,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010256,GO:0016043,GO:0016192,GO:0016787,GO:0017016,GO:0017112,GO:0017137,GO:0019538,GO:0019899,GO:0022402,GO:0022607,GO:0030008,GO:0031267,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0048518,GO:0050000,GO:0050789,GO:0050794,GO:0051020,GO:0051128,GO:0051179,GO:0051234,GO:0051259,GO:0051303,GO:0051310,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060341,GO:0065003,GO:0065007,GO:0065009,GO:0070011,GO:0071704,GO:0071840,GO:0090230,GO:0090234,GO:0098687,GO:0098772,GO:0098813,GO:0099023,GO:0140096,GO:1901564,GO:1902115,GO:1903827,GO:1903829,GO:1905340,GO:1905342
Exons8
Evalue1.3e-138
EggNOG OGsKOG2796@1|root,KOG2796@2759|Eukaryota
Descriptionregulation of kinetochore assembly
Cds size2295
COG categoryL
BRITEko00000,ko00001,ko00002,ko03032,ko03400,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig765.9.2prot_P-littoralis_Contig765.9.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig765 51497..56524 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791579.0989065-UTR-P-littoralis_Contig765:50936..514961680791579.0989065-UTR-P-littoralis_Contig765:50936..51496Pylaiella littoralis U1_48UTRP-littoralis_Contig765 50937..51496 -
1680791579.2142627-UTR-P-littoralis_Contig765:56524..565491680791579.2142627-UTR-P-littoralis_Contig765:56524..56549Pylaiella littoralis U1_48UTRP-littoralis_Contig765 56525..56549 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791579.1163611-CDS-P-littoralis_Contig765:51496..517951680791579.1163611-CDS-P-littoralis_Contig765:51496..51795Pylaiella littoralis U1_48CDSP-littoralis_Contig765 51497..51795 -
1680791579.1290407-CDS-P-littoralis_Contig765:52085..522061680791579.1290407-CDS-P-littoralis_Contig765:52085..52206Pylaiella littoralis U1_48CDSP-littoralis_Contig765 52086..52206 -
1680791579.13964-CDS-P-littoralis_Contig765:52793..531951680791579.13964-CDS-P-littoralis_Contig765:52793..53195Pylaiella littoralis U1_48CDSP-littoralis_Contig765 52794..53195 -
1680791579.1506796-CDS-P-littoralis_Contig765:53460..536731680791579.1506796-CDS-P-littoralis_Contig765:53460..53673Pylaiella littoralis U1_48CDSP-littoralis_Contig765 53461..53673 -
1680791579.1604676-CDS-P-littoralis_Contig765:54342..547191680791579.1604676-CDS-P-littoralis_Contig765:54342..54719Pylaiella littoralis U1_48CDSP-littoralis_Contig765 54343..54719 -
1680791579.174044-CDS-P-littoralis_Contig765:54887..549511680791579.174044-CDS-P-littoralis_Contig765:54887..54951Pylaiella littoralis U1_48CDSP-littoralis_Contig765 54888..54951 -
1680791579.1878228-CDS-P-littoralis_Contig765:55410..561491680791579.1878228-CDS-P-littoralis_Contig765:55410..56149Pylaiella littoralis U1_48CDSP-littoralis_Contig765 55411..56149 -
1680791579.2016437-CDS-P-littoralis_Contig765:56444..565241680791579.2016437-CDS-P-littoralis_Contig765:56444..56524Pylaiella littoralis U1_48CDSP-littoralis_Contig765 56445..56524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig765.9.2

>prot_P-littoralis_Contig765.9.2 ID=prot_P-littoralis_Contig765.9.2|Name=mRNA_P-littoralis_Contig765.9.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=765bp
MNDEGDAKQGINREGPLRSITSPPFAGPVAHVNSGPLAHNHKDASNACIS
TIGGAAGAAPATLPPTITPTPPTPTPTPTPPPPTTTTTTMIAAHPLDYAS
QAEQQRQQQQRQHQISPLPQHSQQQQPFSAGGVGSSPPLQAGATPGPGPG
PGPPVGRSSGGGSGSGSSSSSSSDPLSHLLMRPGGMQMERDTPPVILPPT
TAHQQLGGATELRFDFSSNAPPTAVEAQQAVLSPPPLTAEPISARAGEQG
SGGDSAPPGFDRVGGEAGFGGEREPPSAKAPPMPALPPPPTSYDAAKHYQ
LQQHQQHQQRALAPPVPAALTGVALPHPPRPPQQQHQQQVPPPPPQEKSL
DTLVAEFLSSEAPPPPEPVNETLALGDPDGWVGALGQLARRRAWRKLVEI
AGTMLVAHRGGGAPGLTAEQATDLRLRRAMGMLKVGRAADAAEAAEEAGR
EAGQPPLAAVSIAARVAAAGAKSLCERAAEGEALDELTALKFELEGVIAA
CDGDAARAAAAATPTPTPTSAAVTLTVAEAITWRRRVMSCLVNTFVGRGN
WRQALELLEDLGKEQCSSSSRTSSTAAGGALRVELLSRVGRVFLQFGSLG
DAEVYFRRAEKAAEAMGGTKEGNPRVLINRGLLDFSKNEFVAAQENFRNA
ASAAVAKEEPPDDTNDGWLWATLDQGTGLVDSALNNLSLAMVYSCDVMRG
VKTLEALIRKDPLLYMLDVVIFNLCTLYDLSFDAIASAKKKRTLQAVAQR
YRLEDIDPASFRMS*
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mRNA from alignment at P-littoralis_Contig765:50937..56549-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig765.9.2 ID=mRNA_P-littoralis_Contig765.9.2|Name=mRNA_P-littoralis_Contig765.9.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5613bp|location=Sequence derived from alignment at P-littoralis_Contig765:50937..56549- (Pylaiella littoralis U1_48)
GCCAAACAGCAGGAACGTCGTGACAATGAACGACGAGGGAGATGCTAAGC
AAGGCATCAACCGAGAGGGTCCACTACGGAGTATTACCAGTCCTCCGTTT
GCGGGGTGAGTGAAGCTGCTTGTTGTTCTTGCATGTCTTCGACTTCGATA
AAAAAAATAGCGCACAGCAGCTTCGCTGTCGGAATCTCCGTTTCGCGGCT
CTATTTTATCTTGCGTAATAATTTCTCGAACACCGACCTGCCCACCTCTG
TGATCATCTTGGTTGACGTACGAGTATGTAAACTCTGATCCGGTGTAGTA
CACACCAACCAGGATTGATGCACATCTGATAAAACCTTACGTGAAAAGTC
GCCCTCCCCAACGTTGATTGCCGTCTTCTCGGGTCTGCTTCTGCATTCAG
GCCGGTGGCACATGTCAACTCTGGGCCTCTGGCACACAATCATAAAGACG
CCAGTAACGCCTGTATTTCCACCATTGGTGGAGCGGCAGGCGCGGCACCG
GCAACGCTTCCGCCAACAATAACACCAACACCACCAACACCAACACCAAC
ACCAACACCACCACCACCAACAACAACAACAACAACAATGATAGCAGCAC
ACCCTCTGGACTACGCCTCCCAGGCAGAACAGCAGCGGCAGCAGCAGCAG
CGACAGCATCAAATTTCACCACTTCCACAGCACTCACAGCAACAACAGCC
TTTCTCAGCGGGTGGTGTTGGAAGTTCACCACCGTTGCAAGCAGGGGCGA
CGCCGGGGCCGGGGCCAGGGCCGGGCCCTCCCGTCGGGCGAAGCAGCGGC
GGCGGCAGCGGTAGCGGCAGCAGCAGCAGCAGCAGCAGCGACCCTCTGTC
ACATTTACTGATGCGGCCGGGCGGCATGCAGATGGAGCGGGACACGCCTC
CAGTCATCCTCCCGCCCACTACTGCTCATCAACAACTGGGTGGTGCCACG
GAATTGAGATTCGACTTCAGCAGCAATGCCCCTCCTACTGCTGTTGAGGC
TCAGCAGGCAGTACTGTCGCCGCCGCCGTTGACTGCCGAGCCCATTTCTG
CTCGTGCTGGGGAACAGGGCAGTGGCGGCGACTCCGCGCCGCCAGGGTTT
GATCGCGTAGGTGGTGAGGCTGGATTCGGCGGAGAAAGGGTGAGCGTGAT
TGAGTCGGAGCGGTTCTTCTGCAAGACCTCGTCGAAGATGTGGGCGATGT
TTTCATTTCGCACGTACGGTAGTAGCAGTGTCACGCGTGTTCCTCTGGAG
TGCAGAGGTTGCGCTGGTATATTACGATACGCACACACCCGTTTTTCTGG
CACAAAACATCAAGTGTTTATCGTCAGCCATGCCCTGCGGAAGCCAATTC
ATCAACGATGACGCAAATATGTATTGTCTCTCTTTTGCTGAATTAGCGCA
CGCGCACTGTCTCTGCCTGTAGTTCCTGGTGTAGTGCACCTGCCAAAGCG
CTCTGCAAGAGTTATTCAAGTGCTGTTTTACAACTTCTGCAACCTCCAAG
TTGTAAGATTCCAGGTGCTTACTTTTTCCTTCTGGAAGAGCCTCCGTAAT
GCCGCGCTTGTGTGTATGCGCCTGTCAATGCGGATGTTTTCTGAGCAGGA
GCCGCCGTCTGCGAAAGCCCCGCCAATGCCAGCATTACCACCGCCGCCCA
CGAGCTACGACGGTGAGAAACCACAGCAGTACCGTCCATGATTTGCTCGA
GATACAAAACTGCACAGATCTGTACAGAGGTTTGATCGCGACCACTTTGT
TCTCTAACAGCCCTGCTCTTAGCAATCAAATCCCGATCTCGGTTGTCCGC
TCGTCGTCGGTACGGCACTTCGTGCAACAGCCGCCAAGCACTACCAATTG
CAGCAGCACCAGCAGCACCAGCAGCGAGCTCTAGCCCCCCCGGTGCCAGC
AGCTCTGACCGGTGTAGCTCTGCCACACCCACCACGACCACCGCAGCAGC
AGCACCAGCAGCAGGTACCTCCTCCACCACCTCAGGAGAAAAGCCTCGAC
ACCCTCGTTGCAGAGTTTTTATCTTCAGAGGCGCCGCCCCCGCCGGAGCC
CGTGAACGAGACCTTGGCCTTGGGCGATCCCGACGGGTGGGTGGGGGCGC
TGGGGCAGCTTGCTCGGCGGAGAGCGTGGCGAAAGCTCGTTGAGATCGCG
GGGACCATGCTCGTGGCGCACAGGGGCGGAGGGGCCCCGGGCCTGACCGC
TGAACAGGTAGAAAGAGAGGAAGAAATACGTATGCTCATATGTATGCAGC
AGTGAGAAAAACCCGTCAGATACCGTGGTTCATGCCTTGGTACCGGATAG
GAGTAGCTCATCTGGCTGCAGGGGCTCGGCACGTGTTGTCTGCGGAGTTA
CACTAGGAGATTGGTCACCCGATTCCCGCTGAGCCCCTGTCATGGAGCCA
GAGCGACCGCTCGTTGTCTGCGATACCACGTGTTGCTGAGACAGGCACGT
ACTGGTGCTCTGGCCGCCCTTGACTACGCAACCTCATGTTTTCAAGTCTG
TCTACCGTCCTTGTCGGGTGTCGTTCCGTGCAATGTACACGTATTGGGCC
ACGGTCGAAGGTCCGTAGTTTAGCGTGCGTTCCCGATGGCCCTCTGTCTG
AATCTTGCGGAGACAAATACGTACGCAGTTCGGGTTACACACGTGCTCTT
GTTGGGATGGGAGGGCTGCTTGTTTGGACATATTTAGGAAACGCCCGAAG
ACATCCCGGAAACGAGGTTATGAAATTGCCGAAATGTTCGTGGCTTAATT
ATTCTCAAATGCACAGTTCAAGGCGACAGAATGCTCTTCGCGTGTGTTTC
CGAACATGCTGTTTCGTACATTCCGTTCATTTACGTGCGTAAAATCGTGC
ATCCACAATCTTTACCCGAAAAACAGGCGACGGATTTACGGCTGCGGCGT
GCCATGGGAATGTTGAAAGTAGGAAGGGCGGCAGATGCAGCGGAGGCTGC
CGAAGAAGCTGGCCGAGAAGCCGGGCAGCCGCCTCTGGCCGCCGTTAGCA
TTGCCGCTCGCGTCGCCGCCGCCGGGGCTAAGTCTCTGTGCGAAAGAGCG
GCGGAGGGGGAAGCACTAGACGAGCTCACCGCGCTGAAGGTACTCGTTAC
ATGTATTGCCCCCCACCTGGTAGATGCTGAGTGTTGGTACTGCTGTGGTG
CTGTGTGTATGGTTCTATGTTTTATAGTCAACTTCTGTTCGTGCATGAGA
GTGTATGGACGTGGGAAAGGTGGCCCGAAAACTGCTTAAAATATGCAGAG
CGCGTGATACTGCTCACGGCGTGTTTTATCCAACCCCTCTCCCCTTGTCT
CCCCCGTCTACCTCGCTGTCTTGGGGCGCATTTTCTTTTACCATGGTGAC
TCAGTTTGAGCTAGAGGGTGTGATTGCCGCTTGTGATGGCGATGCAGCCA
GGGCGGCAGCAGCAGCAACACCAACACCAACACCGACCTCAGCGGCGGTA
ACGCTAACGGTGGCGGAGGCGATCACGTGGCGACGACGTGTAATGTCTTG
CCTTGTCAATACGTTCGTTGGGCGGGGAAACTGGCGGCAAGCGTTGGAAC
TTTTAGAGGACCTGGGGAAAGAGCAGTGCAGCAGCAGCAGCCGAACGAGC
TCGACCGCTGCAGGCGGTGCTCTTAGGGTAGAGCTCCTCTCTCGCGTAGG
CAGAGTGTTCCTGCAGTTTGGCTCGCTGGGGGACGCCGAGGTTTATTTCC
GTCGCGCGGAGAAGGCGGCGGAAGCGATGGGAGGAACCAAGGAAGGAAAT
CCCAGAGTGAGTCCGTCCGTCCGGCTGGTTGCTGTCGCTGTGGTATTCTT
TGTGGCCGGTGTTGGGCTTGACCTTTTTGGCATGGGGTCGCCACGACTTT
TTGTACTCCGCGCTCGGAAAGGAGACGTACGCCTTGCACCTGAGACGATG
TTGCCGTTCTGTTCTTTTCCCTGGTGCGAGTTTCGAGGAAGCGCTCTCGC
GGCCGGGGGGGGAAGTGATGAGCGACCTTAGCGTCCTGCATGTCAAGAGT
TTCGTTTTGGTGCAGGAAGTGGGGACCGGAACGTTTGCGCTCAGCATGCG
GGCGGGTTGAAAGGCGTGGTTTCAAGGCAGCGTTGTTCTCGCGTCCATTG
GGTTTGAGCAAGCAGAATGAACGCGCGTCTTTAGCGGTAATCCGCAGGCA
CGAAGTACGTACGACGATTGCACGCGTGTTGAAAATATTTTGACTTTTTT
TTTATTCCCCGGCTTCGTGTTTGTCGATGTCGACGAAGAGATCATGTAAT
GTGTACATCGTAGGATGCTTGGGTTTTTCCTCCCGGCAAAAAAAATGACA
CCATATTTTTTGCCCTGTTTGCTTCCAACCATAACGATGCCAGGTGCTGA
TCAATCGCGGACTGCTAGATTTCTCGAAGAACGAGTTCGTGGCGGCGCAA
GAAAACTTCCGGAACGCGGCTTCGGCGGCGGTGGCTAAGGAGGAGCCACC
AGACGATACCAACGGTAAGCGAGTTTCATGCTTTCGAGTGTCATGTGAGG
GTGGATTTTATGGGGTAGAAAGCAAAACTTGTCGTTTCATGTTGACCCGG
GGTAACAGCAAGACTCGTGCGGCAAAAAAGTGGTGTACCAGGTACTGCTG
TAGAGGGTTTGACTCGGATCGCCGTCCATCACTTGTGACTTCATTCTCCG
TAAACACGCTGCATGCAGCATGTCCCACCCACCGATTGAACCGATGTGTT
ATTCGTGTTGTCGTGTTCTGCCGATTTTTTTTGTTTCATCTTCATTCCAT
GCAGACGGGTGGCTGTGGGCAACCCTGGACCAGGGGACCGGGCTCGTCGA
CTCCGCTCTCAACAACCTTAGCCTGGCGATGGTGTACTCGTGCGACGTCA
TGCGCGGGGTCAAGACCCTAGAGGCGCTGATAAGAAAGGATCCTCTTCTG
TACATGCTGGACGTGGTGATCTTTAACCTCTGCACGCTCTACGACCTGTC
CTTCGACGCGATCGCAAGCGCCAAAAAAAAGCGGACGCTGCAGGCCGTGG
CGCAGCGGTACCGGCTCGAAGACATCGACCCTGCCTCTTTCCGCATGAGC
TAACGTATGTTAAGGCGGCTGGCTGGCTGGTTGATGCCCGCCACAACTAG
CGTATCTACGCGTGTGAACGTTGTTGTGTCGACTACAGTTATGTGGTTTC
ATTTGATCGGCGAATTTTCGTAGTCAAGTTACACGTCGTGTTTCATCTGT
ACCTTGCCGAGTCTCAGTGTCGCTTAAAACATGAAAGGTTGCTTTGGTAG
AGGTGGCCGTAGCAGCGAAGGCGAGCAAATCTGTTGCGGGTTTGGCGTGC
ACGAGTCATTTTCTGTGCTCCCTCTGTTGCCTGAGGTTGAGTATGTTGTT
GGCGAGAGTTTCGCAAGTGCACACGGTCGCAGGCCCTTGAGTCGCTGAAC
GACGCCTTCCAAATTGCACCCAGACCAACAGGGACAGGCTATTCTGAGGG
AAAACCAAGGAGTGCCGAGAAGGCAAAAAGCATTTCGACGAATATGCCAA
ACCGTGTTTGGCGGCGTGATGGCGAAGGCGAAATAAACCCGTCAGTATCC
TGCACCACGAAAGCATGCTTTTAATAACTGCTGTGAGCGGTTATTCGTAT
TGCACTTCACGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig765:50937..56549-

>mRNA_P-littoralis_Contig765.9.2 ID=mRNA_P-littoralis_Contig765.9.2|Name=mRNA_P-littoralis_Contig765.9.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2295bp|location=Sequence derived from alignment at P-littoralis_Contig765:50937..56549- (Pylaiella littoralis U1_48)
ATGAACGACGAGGGAGATGCTAAGCAAGGCATCAACCGAGAGGGTCCACT
ACGGAGTATTACCAGTCCTCCGTTTGCGGGGCCGGTGGCACATGTCAACT
CTGGGCCTCTGGCACACAATCATAAAGACGCCAGTAACGCCTGTATTTCC
ACCATTGGTGGAGCGGCAGGCGCGGCACCGGCAACGCTTCCGCCAACAAT
AACACCAACACCACCAACACCAACACCAACACCAACACCACCACCACCAA
CAACAACAACAACAACAATGATAGCAGCACACCCTCTGGACTACGCCTCC
CAGGCAGAACAGCAGCGGCAGCAGCAGCAGCGACAGCATCAAATTTCACC
ACTTCCACAGCACTCACAGCAACAACAGCCTTTCTCAGCGGGTGGTGTTG
GAAGTTCACCACCGTTGCAAGCAGGGGCGACGCCGGGGCCGGGGCCAGGG
CCGGGCCCTCCCGTCGGGCGAAGCAGCGGCGGCGGCAGCGGTAGCGGCAG
CAGCAGCAGCAGCAGCAGCGACCCTCTGTCACATTTACTGATGCGGCCGG
GCGGCATGCAGATGGAGCGGGACACGCCTCCAGTCATCCTCCCGCCCACT
ACTGCTCATCAACAACTGGGTGGTGCCACGGAATTGAGATTCGACTTCAG
CAGCAATGCCCCTCCTACTGCTGTTGAGGCTCAGCAGGCAGTACTGTCGC
CGCCGCCGTTGACTGCCGAGCCCATTTCTGCTCGTGCTGGGGAACAGGGC
AGTGGCGGCGACTCCGCGCCGCCAGGGTTTGATCGCGTAGGTGGTGAGGC
TGGATTCGGCGGAGAAAGGGAGCCGCCGTCTGCGAAAGCCCCGCCAATGC
CAGCATTACCACCGCCGCCCACGAGCTACGACGCCGCCAAGCACTACCAA
TTGCAGCAGCACCAGCAGCACCAGCAGCGAGCTCTAGCCCCCCCGGTGCC
AGCAGCTCTGACCGGTGTAGCTCTGCCACACCCACCACGACCACCGCAGC
AGCAGCACCAGCAGCAGGTACCTCCTCCACCACCTCAGGAGAAAAGCCTC
GACACCCTCGTTGCAGAGTTTTTATCTTCAGAGGCGCCGCCCCCGCCGGA
GCCCGTGAACGAGACCTTGGCCTTGGGCGATCCCGACGGGTGGGTGGGGG
CGCTGGGGCAGCTTGCTCGGCGGAGAGCGTGGCGAAAGCTCGTTGAGATC
GCGGGGACCATGCTCGTGGCGCACAGGGGCGGAGGGGCCCCGGGCCTGAC
CGCTGAACAGGCGACGGATTTACGGCTGCGGCGTGCCATGGGAATGTTGA
AAGTAGGAAGGGCGGCAGATGCAGCGGAGGCTGCCGAAGAAGCTGGCCGA
GAAGCCGGGCAGCCGCCTCTGGCCGCCGTTAGCATTGCCGCTCGCGTCGC
CGCCGCCGGGGCTAAGTCTCTGTGCGAAAGAGCGGCGGAGGGGGAAGCAC
TAGACGAGCTCACCGCGCTGAAGTTTGAGCTAGAGGGTGTGATTGCCGCT
TGTGATGGCGATGCAGCCAGGGCGGCAGCAGCAGCAACACCAACACCAAC
ACCGACCTCAGCGGCGGTAACGCTAACGGTGGCGGAGGCGATCACGTGGC
GACGACGTGTAATGTCTTGCCTTGTCAATACGTTCGTTGGGCGGGGAAAC
TGGCGGCAAGCGTTGGAACTTTTAGAGGACCTGGGGAAAGAGCAGTGCAG
CAGCAGCAGCCGAACGAGCTCGACCGCTGCAGGCGGTGCTCTTAGGGTAG
AGCTCCTCTCTCGCGTAGGCAGAGTGTTCCTGCAGTTTGGCTCGCTGGGG
GACGCCGAGGTTTATTTCCGTCGCGCGGAGAAGGCGGCGGAAGCGATGGG
AGGAACCAAGGAAGGAAATCCCAGAGTGCTGATCAATCGCGGACTGCTAG
ATTTCTCGAAGAACGAGTTCGTGGCGGCGCAAGAAAACTTCCGGAACGCG
GCTTCGGCGGCGGTGGCTAAGGAGGAGCCACCAGACGATACCAACGACGG
GTGGCTGTGGGCAACCCTGGACCAGGGGACCGGGCTCGTCGACTCCGCTC
TCAACAACCTTAGCCTGGCGATGGTGTACTCGTGCGACGTCATGCGCGGG
GTCAAGACCCTAGAGGCGCTGATAAGAAAGGATCCTCTTCTGTACATGCT
GGACGTGGTGATCTTTAACCTCTGCACGCTCTACGACCTGTCCTTCGACG
CGATCGCAAGCGCCAAAAAAAAGCGGACGCTGCAGGCCGTGGCGCAGCGG
TACCGGCTCGAAGACATCGACCCTGCCTCTTTCCGCATGAGCTAA
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