mRNA_P-littoralis_Contig763.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig763.24.1
Unique NamemRNA_P-littoralis_Contig763.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig763.24.1 vs. uniprot
Match: D7FVV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVV0_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 4.830e-22
Identity = 68/134 (50.75%), Postives = 79/134 (58.96%), Query Frame = 3 
Query:    3 MIEGLVEMFEAALEAGLVGLVDPKEL---TGSGXXXXXXXSILAVEKTARMLKAA-QGKELPGNDSGKGDGGGNGDQVGFPAWVDKAHDVLVPGFQGLVDHVARVHLGLAVEVLPVAKASVASEGDEATEHKKG 392
            MIE LVEMFE ALEAGL GLVD KEL   TG         S    +K+AR  K A +  E   N    GDG G  D +  P WVDK++ VLVPGF+GL+DHV RVHLGLAV       A+V SEG++    K G
Sbjct:  305 MIERLVEMFEGALEAGLEGLVDQKELPGGTGVSGSGAGGVSTTRAKKSARSPKTATRAAETKEN---SGDGRGGADNIVLPDWVDKSYGVLVPGFRGLLDHVTRVHLGLAV-------AAVPSEGNKGDNGKTG 428
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BLAST of mRNA_P-littoralis_Contig763.24.1 vs. uniprot
Match: A0A6H5KX11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX11_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.580e-18
Identity = 65/131 (49.62%), Postives = 75/131 (57.25%), Query Frame = 3 
Query:    3 MIEGLVEMFEAALEAGLVGLVDPKELTG-SGXXXXXXXSILAVEKTARMLKAAQGKELPGNDSGKGDGGGNGDQVGFPAWVDKAHDVLVPGFQGLVDHVARVHLGLAVEVLPVAKASVASEGDEATEHKKG 392
            MIE LVEMFE ALEAGL GLVDPKEL+G + XXXXXXX                           GDG G  D +  P WV+K++ VLVPGF+GL+DHVARVHLGL V   P       SEG++    K G
Sbjct:  377 MIERLVEMFEGALEAGLEGLVDPKELSGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETKENSGDGRGGADNIVLPDWVNKSYGVLVPGFRGLLDHVARVHLGLTVAAAP-------SEGNKGDNGKTG 500
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig763.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVV0_ECTSI4.830e-2250.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX11_9PHAE3.580e-1849.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig763contigP-littoralis_Contig763:84004..84620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size617
Hectar predicted targeting categoryother localisation
Exons1
Cds size615
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791577.4150243-UTR-P-littoralis_Contig763:84003..840051680791577.4150243-UTR-P-littoralis_Contig763:84003..84005Pylaiella littoralis U1_48UTRP-littoralis_Contig763 84004..84005 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791577.428882-CDS-P-littoralis_Contig763:84005..846201680791577.428882-CDS-P-littoralis_Contig763:84005..84620Pylaiella littoralis U1_48CDSP-littoralis_Contig763 84006..84620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig763.24.1prot_P-littoralis_Contig763.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig763 84006..84620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig763.24.1

>prot_P-littoralis_Contig763.24.1 ID=prot_P-littoralis_Contig763.24.1|Name=mRNA_P-littoralis_Contig763.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=205bp
MIEGLVEMFEAALEAGLVGLVDPKELTGSGGGGGGGGSILAVEKTARMLK
AAQGKELPGNDSGKGDGGGNGDQVGFPAWVDKAHDVLVPGFQGLVDHVAR
VHLGLAVEVLPVAKASVASEGDEATEHKKGGDNDDNDNDSGNGNDSNTAG
AATGRSSSSTPSESEAAVTVQGELHQREKKEQDEQQQEGADDDTRHTLSS
PADNT
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mRNA from alignment at P-littoralis_Contig763:84004..84620+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig763.24.1 ID=mRNA_P-littoralis_Contig763.24.1|Name=mRNA_P-littoralis_Contig763.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=617bp|location=Sequence derived from alignment at P-littoralis_Contig763:84004..84620+ (Pylaiella littoralis U1_48)
TGATGATCGAAGGGCTCGTGGAGATGTTTGAAGCCGCGCTCGAGGCCGGG
CTGGTTGGTTTGGTTGACCCGAAAGAACTAACCGGTAGCGGCGGTGGCGG
TGGCGGTGGCGGAAGCATTCTAGCGGTCGAGAAAACGGCGAGGATGCTGA
AGGCAGCCCAAGGTAAAGAACTCCCAGGAAACGACAGCGGCAAGGGTGAT
GGCGGTGGCAACGGCGACCAGGTAGGTTTTCCCGCCTGGGTTGACAAGGC
TCACGACGTGCTCGTGCCAGGATTTCAGGGGCTGGTCGATCACGTCGCAC
GCGTCCACCTGGGACTGGCTGTAGAAGTGTTGCCAGTGGCAAAAGCTTCT
GTTGCATCCGAGGGAGACGAAGCGACGGAGCACAAGAAGGGGGGCGATAA
CGATGATAATGACAACGATAGCGGCAACGGCAACGACAGCAACACGGCTG
GCGCCGCCACCGGTAGGAGCAGCAGCTCTACCCCTAGCGAAAGCGAAGCC
GCGGTTACCGTGCAAGGTGAACTGCACCAAAGAGAAAAAAAGGAGCAAGA
CGAGCAGCAGCAGGAGGGGGCGGATGATGATACGAGGCACACACTGTCCA
GCCCAGCCGACAACACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig763:84004..84620+

>mRNA_P-littoralis_Contig763.24.1 ID=mRNA_P-littoralis_Contig763.24.1|Name=mRNA_P-littoralis_Contig763.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=615bp|location=Sequence derived from alignment at P-littoralis_Contig763:84004..84620+ (Pylaiella littoralis U1_48)
ATGATCGAAGGGCTCGTGGAGATGTTTGAAGCCGCGCTCGAGGCCGGGCT
GGTTGGTTTGGTTGACCCGAAAGAACTAACCGGTAGCGGCGGTGGCGGTG
GCGGTGGCGGAAGCATTCTAGCGGTCGAGAAAACGGCGAGGATGCTGAAG
GCAGCCCAAGGTAAAGAACTCCCAGGAAACGACAGCGGCAAGGGTGATGG
CGGTGGCAACGGCGACCAGGTAGGTTTTCCCGCCTGGGTTGACAAGGCTC
ACGACGTGCTCGTGCCAGGATTTCAGGGGCTGGTCGATCACGTCGCACGC
GTCCACCTGGGACTGGCTGTAGAAGTGTTGCCAGTGGCAAAAGCTTCTGT
TGCATCCGAGGGAGACGAAGCGACGGAGCACAAGAAGGGGGGCGATAACG
ATGATAATGACAACGATAGCGGCAACGGCAACGACAGCAACACGGCTGGC
GCCGCCACCGGTAGGAGCAGCAGCTCTACCCCTAGCGAAAGCGAAGCCGC
GGTTACCGTGCAAGGTGAACTGCACCAAAGAGAAAAAAAGGAGCAAGACG
AGCAGCAGCAGGAGGGGGCGGATGATGATACGAGGCACACACTGTCCAGC
CCAGCCGACAACACC
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