mRNA_P-littoralis_Contig763.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig763.23.1
Unique NamemRNA_P-littoralis_Contig763.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig763.23.1 vs. uniprot
Match: D7FVV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVV0_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 1.140e-48
Identity = 94/118 (79.66%), Postives = 101/118 (85.59%), Query Frame = 1 
Query:    1 MASTASIGAGDLDTPAWVVNVREEISRSPAWEVLSDQLYDRVSIVLKSHGLGHFSDLCSAEQVTLLEEAHREIMSEDNKVYQVFESQFSKFMDTEIAKEARARVEQDETAKRGGTDEV 354
            MASTAS   G + TPAWVVNVREEI RSPAWEVLSDQL++RVS VLKSHGLGHFSDL S EQ+TLLEEAHR+IMSE+NKVYQ FESQFSK MD EIAKEARARV QD TA R GT+E 
Sbjct:   38 MASTAS-SMGAVGTPAWVVNVREEIGRSPAWEVLSDQLFERVSTVLKSHGLGHFSDLSSPEQITLLEEAHRDIMSENNKVYQAFESQFSKSMDAEIAKEARARVVQDSTANREGTEEA 154
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BLAST of mRNA_P-littoralis_Contig763.23.1 vs. uniprot
Match: A0A6H5KX11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX11_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 1.870e-47
Identity = 92/118 (77.97%), Postives = 99/118 (83.90%), Query Frame = 1 
Query:    1 MASTASIGAGDLDTPAWVVNVREEISRSPAWEVLSDQLYDRVSIVLKSHGLGHFSDLCSAEQVTLLEEAHREIMSEDNKVYQVFESQFSKFMDTEIAKEARARVEQDETAKRGGTDEV 354
            M  TAS G G + TPAWVVNVREEI RSPAWEVLSDQL++RVS VLKSHGLGHFSDL S EQ+TLLEEAHR+IMSE+NKVYQ FESQFSK MD EIAKEARARV QD  A R GT+E 
Sbjct:  110 MIPTAS-GMGAVGTPAWVVNVREEIGRSPAWEVLSDQLFERVSTVLKSHGLGHFSDLSSPEQITLLEEAHRDIMSENNKVYQAFESQFSKSMDAEIAKEARARVVQDSAANREGTEEA 226
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BLAST of mRNA_P-littoralis_Contig763.23.1 vs. uniprot
Match: A0A814DSI0_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814DSI0_9BILA)

HSP 1 Score: 54.3 bits (129), Expect = 4.450e-6
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:   43 PAWVVNVREEISRSPAWEVLSDQLYDRVSIVLKSHGLGHFSDLCSAEQVTLLEEAHREIMSEDN-KVYQVFESQFSKFMDTEI 288
            P+W+++VRE+ ++S  W  LS  +YD V   L    + +FS+L   E+  LLE A R + S D  +VY+  +S+ S  +D  +
Sbjct:    9 PSWLIDVREDTTKSNEWAELSKHIYDAVDQHLSQSHVNYFSELTEDEKNLLLERAARSLASSDGGRVYENLQSKLSYLLDQTV 91
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig763.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVV0_ECTSI1.140e-4879.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX11_9PHAE1.870e-4777.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A814DSI0_9BILA4.450e-634.94Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig763contigP-littoralis_Contig763:80939..82326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size357
Hectar predicted targeting categoryother localisation
Exons4
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791577.3414757-CDS-P-littoralis_Contig763:80938..810341680791577.3414757-CDS-P-littoralis_Contig763:80938..81034Pylaiella littoralis U1_48CDSP-littoralis_Contig763 80939..81034 +
1680791577.3559759-CDS-P-littoralis_Contig763:81503..816441680791577.3559759-CDS-P-littoralis_Contig763:81503..81644Pylaiella littoralis U1_48CDSP-littoralis_Contig763 81504..81644 +
1680791577.365095-CDS-P-littoralis_Contig763:81792..818571680791577.365095-CDS-P-littoralis_Contig763:81792..81857Pylaiella littoralis U1_48CDSP-littoralis_Contig763 81793..81857 +
1680791577.3786786-CDS-P-littoralis_Contig763:82271..823261680791577.3786786-CDS-P-littoralis_Contig763:82271..82326Pylaiella littoralis U1_48CDSP-littoralis_Contig763 82272..82326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig763.23.1prot_P-littoralis_Contig763.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig763 80939..82326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig763.23.1

>prot_P-littoralis_Contig763.23.1 ID=prot_P-littoralis_Contig763.23.1|Name=mRNA_P-littoralis_Contig763.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
MASTASIGAGDLDTPAWVVNVREEISRSPAWEVLSDQLYDRVSIVLKSHG
LGHFSDLCSAEQVTLLEEAHREIMSEDNKVYQVFESQFSKFMDTEIAKEA
RARVEQDETAKRGGTDEVL
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mRNA from alignment at P-littoralis_Contig763:80939..82326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig763.23.1 ID=mRNA_P-littoralis_Contig763.23.1|Name=mRNA_P-littoralis_Contig763.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1388bp|location=Sequence derived from alignment at P-littoralis_Contig763:80939..82326+ (Pylaiella littoralis U1_48)
ATGGCCTCGACGGCGTCCATTGGTGCGGGTGATTTGGACACTCCAGCATG
GGTCGTCAATGTCAGAGAAGAGATATCCCGTTCACCAGCGTGGGAGGTGT
GGATGGTGTGATTTCATATGAAATACGCCTCTCTGTGATTGTACAAAAAA
GATCGAATCCAGAGTTTCGGTGTACGGCAGTATAGACTATGCTGCTTTTG
GTGTGGACCCAAAGGCTTGCGCATTTGTGGCTGCACGCGCCGGTATCACA
TAACTGCCGTCCAGTCTAAACTATCCTGTGATGTTGTTTTCGTTCGGCAA
ATATACCAAGTTTATTCTGCATCAACTTCACATACATCAATCATCAGAGA
AAGTCTTCATCGAGTCTCGACCACCAACAACGCGGGAACACAATCGACCT
ACATATTTACATATTTACATACATACCTACACACCGAATTAAAGTACGCA
TATTTCTGCCGGTCGACCGTAAGCTTAGCCTTCTGTTGGGTCCACGCTAT
TATAGTGACCGCCACACCATCGCATGAAGCACCCTGCTGCTGGCACCGAA
ATGCACTCCGGGCAGGTCCTGTCTGATCAACTTTACGATCGGGTGTCCAT
CGTGCTCAAGTCTCATGGCCTCGGACACTTTTCGGACCTGTGCTCTGCGG
AGCAGGTCACGCTGCTGGAAGAAGCGCACCGCGAAATAATGTCCGAAGAC
AACAAGGTGGGAGCTGCTGCTTCTCTTCGCCGTCTAGCGCGAAACGCATG
TGTTCCATTGGGAGATACCCACCCATCATACGACAATAAATCCTCTGCTG
GCTTCCGAAAATTGCTCCTGCGAGCCTTGACCTTCGCCTGACGGTATCGC
GCAGGTTTACCAGGTGTTCGAGTCGCAGTTCAGCAAATTCATGGATACTG
AGATCGCCAAGGAAGCCAGGTTGGACCAAAGAGAGAGATGAATAGAAAAT
GAGAGAGGCGAAGCGAGGCCGTTTGAGTGAGTGATTCATTGTCTCCACTC
TTCGCAAAGGGAGCTTGATGCCAGCAGGCCCACGCCACCGCTGAAAATAT
TTCTGTGTTGCAACAGCACCAACGTACTAGACCTGTACTTCGTATACTGT
AGAGCACAATGCACAAAGCGTAAACATCCTACGAAGTATAATGAAAACCG
GTACATACAAAAGCACAAAACACATCTGCGCAAAGTACGTACACATACTC
ACACGACGTGGCTCATGCATGCGTCTAGACACAAACGACATAGTGGTATG
TACAAACAATTTCTGAACTACAACGATTACCACACATACAAAAAAAGCAT
CGCTTTGTTTGTGTTGTACTTGCCGCCTAGCAGAGCAAGAGTCGAGCAGG
ACGAAACAGCCAAACGCGGCGGCACCGACGAAGTCCTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig763:80939..82326+

>mRNA_P-littoralis_Contig763.23.1 ID=mRNA_P-littoralis_Contig763.23.1|Name=mRNA_P-littoralis_Contig763.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig763:80939..82326+ (Pylaiella littoralis U1_48)
ATGGCCTCGACGGCGTCCATTGGTGCGGGTGATTTGGACACTCCAGCATG
GGTCGTCAATGTCAGAGAAGAGATATCCCGTTCACCAGCGTGGGAGGTCC
TGTCTGATCAACTTTACGATCGGGTGTCCATCGTGCTCAAGTCTCATGGC
CTCGGACACTTTTCGGACCTGTGCTCTGCGGAGCAGGTCACGCTGCTGGA
AGAAGCGCACCGCGAAATAATGTCCGAAGACAACAAGGTTTACCAGGTGT
TCGAGTCGCAGTTCAGCAAATTCATGGATACTGAGATCGCCAAGGAAGCC
AGAGCAAGAGTCGAGCAGGACGAAACAGCCAAACGCGGCGGCACCGACGA
AGTCCTT
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